genome.fa.s6.2.7.7.80.10.50.1000.337.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  337  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105448083--105448181	24	4.1	24	85	5	137	35	4	38	22	1.73
105449057--105449098	17	2.4	18	80	4	50	33	0	28	38	1.58
105449613--105449723	27	4.1	27	88	5	147	18	24	22	35	1.96
105450987--105451020	16	2.1	16	94	0	59	17	0	2	79	0.86
105456916--105457091	46	3.8	46	78	12	207	21	21	28	28	1.98
105456913--105457084	93	1.8	93	96	0	317	21	21	29	27	1.99
105463795--105463866	29	2.5	29	86	0	99	30	29	12	27	1.93
105467095--105467139	22	2.0	23	91	4	74	42	4	8	44	1.56
105467296--105467395	51	2.0	51	84	7	132	21	17	31	31	1.95
105468593--105468673	42	1.9	42	89	0	126	14	30	37	17	1.90
105470264--105470509	29	8.3	29	76	3	213	37	15	25	21	1.93
105471818--105471949	29	4.6	29	88	0	165	29	15	31	24	1.95
105473950--105473976	12	2.2	12	100	0	54	22	33	29	14	1.94
105474795--105474920	20	6.3	20	69	0	90	15	28	17	38	1.91
105474779--105474854	40	1.9	40	91	0	125	17	26	19	36	1.94
105474801--105474914	60	1.9	60	94	0	201	17	24	17	40	1.91
105476047--105476122	37	2.1	37	97	0	143	38	5	22	34	1.77
105491452--105491633	39	4.6	39	89	0	247	23	31	21	23	1.98
105491482--105491634	39	3.9	39	92	0	252	23	32	20	23	1.98
105499536--105499717	39	4.6	39	89	0	247	23	31	21	23	1.98
105499566--105499718	39	3.9	39	92	0	252	23	32	20	23	1.98
105504775--105504967	6	31.8	6	75	15	175	47	13	18	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105505085--105505150	27	2.5	26	85	7	87	37	22	22	16	1.93
105505085--105505158	27	2.8	27	78	13	82	36	21	24	17	1.95
105505109--105505166	27	2.1	27	84	6	73	36	27	20	15	1.93
105505323--105505381	22	2.7	22	81	0	64	32	22	25	20	1.98
105505469--105505551	27	3.1	26	86	5	112	36	19	22	21	1.95
105505750--105505946	27	7.3	27	81	3	182	26	18	17	36	1.94
105505750--105505938	54	3.5	54	83	2	229	26	19	17	35	1.94
105505769--105505945	81	2.2	81	85	2	239	25	18	18	37	1.94
105505950--105506304	27	13.2	27	83	5	423	40	9	21	28	1.85
105520652--105520802	40	3.8	39	84	2	151	23	27	23	26	2.00
105520652--105520802	80	1.9	79	83	6	198	23	27	23	26	2.00
105527167--105527291	39	3.2	39	83	3	153	24	28	23	23	1.99
105527182--105527329	40	3.8	38	82	8	147	22	27	22	26	2.00
105535296--105535479	40	4.6	40	84	6	239	25	23	26	24	2.00
105535296--105535479	80	2.3	80	88	3	264	25	23	26	24	2.00
105535740--105535783	22	2.0	22	82	8	54	31	11	13	43	1.80
105542402--105542508	24	4.5	24	97	0	196	19	16	27	36	1.93
105542402--105542530	48	2.7	48	90	2	152	22	17	25	34	1.95
105550077--105550237	24	6.8	23	93	4	252	20	18	26	34	1.96
105550077--105550237	48	3.4	48	94	1	281	20	18	26	34	1.96
105550077--105550259	72	2.6	70	88	6	269	22	18	25	33	1.97
105550077--105550259	48	3.9	48	91	2	246	22	18	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105557833--105557995	24	6.8	24	95	0	290	20	18	26	34	1.95
105561947--105562000	20	2.8	20	75	10	58	66	0	0	33	0.92
105561946--105561992	21	2.2	21	85	7	60	68	0	0	31	0.90
105568684--105568741	26	2.2	26	100	0	116	36	22	15	25	1.94
105569082--105569141	10	6.0	10	84	11	79	21	8	1	68	1.25
105580416--105580463	25	1.9	25	87	8	71	64	4	0	31	1.12
105586131--105586168	20	1.9	20	89	10	60	57	2	21	18	1.52
105589250--105589279	12	2.4	12	94	5	51	80	0	0	20	0.72
105589322--105589358	12	3.1	12	88	0	56	62	0	8	29	1.24
105589408--105589488	5	16.6	5	75	20	66	76	0	1	22	0.86
105589397--105589488	16	5.7	16	76	14	91	75	0	2	22	0.92
105589397--105589487	15	6.1	15	76	13	82	74	0	2	23	0.92
105589405--105589487	38	2.3	34	82	12	94	75	0	1	22	0.87
105589402--105589487	23	3.6	23	70	22	61	75	0	1	23	0.87
105589765--105589831	30	2.2	30	83	0	80	14	29	28	26	1.96
105589776--105589832	30	1.9	30	88	0	87	14	28	28	29	1.95
105595217--105595323	29	3.7	29	81	5	108	23	30	15	29	1.96
105595966--105596263	143	2.1	143	99	0	587	38	29	10	21	1.86
105597366--105597434	6	11.7	6	73	11	54	75	2	2	18	1.06
105599856--105599912	28	2.0	28	100	0	114	52	3	14	29	1.58
105606945--105606992	23	2.1	23	100	0	96	27	20	22	29	1.99
105612116--105612150	18	1.9	18	88	0	52	31	8	20	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105612200--105612236	9	4.1	9	92	0	65	45	13	10	29	1.77
105613564--105613605	20	2.1	20	82	8	50	47	0	4	47	1.23
105614543--105614584	13	3.4	13	75	24	54	61	11	4	21	1.48
105614542--105614589	24	2.0	24	96	4	89	56	12	4	27	1.54
105618436--105618483	19	2.6	19	80	9	55	35	2	14	47	1.56
105618497--105618589	43	2.2	43	92	3	152	27	6	13	51	1.66
105620497--105620687	40	4.8	39	79	10	174	24	28	22	24	2.00
105620504--105620688	79	2.3	81	84	7	236	25	27	22	24	2.00
105628561--105628747	40	4.7	39	79	10	175	24	28	21	25	1.99
105628535--105628747	78	2.7	80	80	8	231	25	27	21	25	1.99
105634498--105634536	19	2.1	18	86	13	53	38	2	15	43	1.60
105634557--105634646	43	2.1	43	89	4	137	28	6	14	50	1.68
105645456--105645495	15	2.7	15	80	3	55	37	0	5	57	1.21
105645775--105645829	28	2.0	28	96	0	101	49	7	10	32	1.65
105646062--105646237	93	1.9	91	86	4	246	36	18	9	35	1.83
105646329--105646367	19	2.1	19	85	4	53	48	0	5	46	1.24
105646320--105646377	20	2.8	20	73	2	53	53	1	3	41	1.28
105646345--105646409	33	1.9	33	90	3	103	64	3	3	29	1.23
105646619--105646703	18	4.5	18	73	12	55	29	3	3	63	1.28
105646665--105646703	20	2.0	20	85	5	53	25	5	5	64	1.35
105646783--105647005	87	2.6	86	82	6	261	33	8	17	39	1.80
105647365--105647390	1	26.0	1	100	0	52	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105648975--105649025	26	1.9	27	81	18	63	52	5	3	37	1.44
105650118--105650147	1	30.0	1	100	0	60	0	0	0	100	0.00
105652733--105652807	29	2.6	29	89	4	107	26	16	32	25	1.96
105657484--105657509	2	13.0	2	100	0	52	50	0	0	50	1.00
105676190--105676339	48	3.1	48	82	1	158	29	20	24	26	1.99
105684737--105684776	20	2.0	20	95	0	71	10	27	20	42	1.83
105685781--105685844	29	2.2	30	83	8	78	28	37	12	21	1.90
105687369--105687427	21	2.8	21	86	0	64	23	23	32	20	1.98
105687677--105687708	15	2.1	15	94	0	55	9	3	0	87	0.64
105688027--105688173	30	4.9	30	76	0	114	25	31	18	23	1.97
105688033--105688177	60	2.4	60	82	0	155	25	31	19	23	1.98
105703448--105703633	20	9.3	20	69	6	135	36	19	31	13	1.90
105703439--105703636	40	4.9	40	86	0	279	36	20	30	13	1.90
105704975--105705009	18	2.0	17	88	5	52	31	0	11	57	1.34
105707263--105707390	40	3.2	40	72	8	120	25	22	28	24	2.00
105717135--105717264	40	3.2	40	81	4	156	23	24	29	23	1.99
105725504--105725667	90	1.8	90	84	2	222	25	26	19	28	1.99
105725585--105725670	42	2.0	42	88	0	127	25	30	18	25	1.98
105725676--105726123	48	9.5	47	78	8	279	30	28	14	27	1.95
105725627--105726043	185	2.2	186	83	4	543	30	27	13	27	1.94
105725718--105726123	96	4.3	96	76	8	368	29	28	14	27	1.95
105728533--105728568	18	1.9	18	88	5	54	44	19	5	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105736591--105736618	13	2.2	13	100	0	56	21	17	14	46	1.84
105738486--105738545	30	2.0	30	86	0	84	28	23	8	40	1.83
105748683--105748743	30	2.0	30	84	6	79	32	22	4	39	1.76
105750859--105751008	40	3.8	40	77	12	132	26	24	26	22	2.00
105750898--105751024	40	3.2	40	77	4	132	24	24	28	22	2.00
105758028--105758273	40	6.2	40	77	12	224	24	22	27	25	2.00
105758067--105758250	79	2.3	80	87	0	262	24	23	27	25	2.00
105758067--105758273	79	2.6	79	83	3	256	24	23	27	25	2.00
105765887--105766133	40	6.2	40	76	12	217	24	22	27	25	2.00
105765926--105766110	79	2.3	80	85	0	255	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433