genome.fa.s6.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  134  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41305668--41305699	14	2.2	14	94	5	55	18	0	0	81	0.70
41308803--41308941	43	3.2	43	82	2	154	28	14	23	33	1.94
41335161--41335327	40	4.2	40	79	6	169	26	22	26	24	2.00
41343201--41343306	37	2.8	37	88	7	151	22	24	30	22	1.99
41348351--41348492	40	3.5	40	83	1	124	27	23	26	22	1.99
41348390--41348518	40	3.2	39	84	6	152	24	22	27	25	2.00
41352642--41352670	10	3.0	10	95	5	51	27	51	10	10	1.68
41352766--41352799	18	1.9	18	88	5	52	17	38	23	20	1.93
41359496--41359546	25	2.0	25	100	0	102	41	0	31	27	1.56
41366146--41366185	20	1.9	22	90	10	66	52	0	0	47	1.00
41367965--41368017	25	2.1	25	96	0	97	50	13	15	20	1.76
41369069--41369157	34	2.6	34	92	1	153	39	21	4	34	1.74
41373183--41373271	45	2.0	46	86	6	128	37	17	21	23	1.94
41373183--41373241	23	2.6	22	79	10	66	35	18	22	23	1.96
41373183--41373272	22	4.0	21	78	11	81	36	17	22	23	1.95
41378046--41378079	16	2.1	16	88	0	50	41	2	20	35	1.68
41384574--41384600	14	1.9	14	100	0	54	37	29	18	14	1.91
41390293--41390550	129	2.0	129	90	0	408	22	11	20	45	1.82
41392396--41392425	2	15.0	2	100	0	60	50	0	0	50	1.00
41399882--41399908	14	1.9	14	100	0	54	51	3	0	44	1.19
41401657--41401690	11	3.2	11	83	8	52	5	0	14	79	0.91
41407531--41407580	24	2.1	24	96	0	91	40	4	14	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41409622--41410055	3	147.3	3	76	10	337	64	2	3	29	1.25
41411631--41411883	45	5.7	45	75	7	205	21	23	23	31	1.99
41411624--41411849	89	2.6	88	87	2	319	20	23	23	32	1.98
41411858--41411970	44	2.6	44	89	0	172	26	26	22	24	2.00
41412164--41412623	88	5.2	88	77	5	259	27	25	17	30	1.97
41412292--41412753	174	2.7	174	85	0	629	27	24	17	30	1.97
41412248--41412835	130	4.5	128	76	6	475	26	24	18	30	1.98
41412292--41412839	174	3.2	172	82	2	551	26	23	18	30	1.98
41412226--41412839	44	14.1	44	74	5	422	26	23	18	30	1.98
41411851--41412839	132	7.5	130	76	4	617	26	24	18	30	1.98
41418726--41418869	76	1.9	76	100	0	288	31	16	20	31	1.95
41419577--41419898	3	109.0	3	71	16	113	63	4	4	27	1.34
41419567--41419662	15	6.4	14	70	16	59	67	7	0	25	1.16
41419819--41419920	23	4.3	23	79	4	105	59	1	4	33	1.30
41419919--41420007	3	29.7	3	100	0	178	67	32	0	0	0.91
41420334--41420409	31	2.5	31	86	0	107	19	31	30	18	1.96
41422947--41422979	17	2.1	17	88	11	52	30	0	9	60	1.27
41426052--41426117	30	2.2	30	91	0	105	21	30	25	22	1.99
41442496--41442583	34	2.6	34	96	1	158	25	17	27	30	1.97
41445304--41445360	6	9.7	6	75	21	50	80	3	3	12	0.96
41445325--41445363	5	7.4	5	85	8	51	82	0	2	15	0.79
41445325--41445363	11	3.6	11	86	6	62	82	0	2	15	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41446943--41447079	3	46.3	3	84	13	171	67	1	2	29	1.11
41446976--41447002	11	2.5	11	100	0	54	74	0	7	18	1.05
41448110--41448175	29	2.3	29	97	0	123	18	33	30	18	1.94
41472431--41472581	42	3.6	42	84	3	196	31	17	23	27	1.97
41476535--41476625	45	2.0	45	93	0	155	37	24	12	26	1.90
41480234--41480284	24	2.1	24	85	10	68	56	9	11	21	1.63
41481898--41482067	46	3.7	46	76	17	181	22	22	27	27	1.99
41481895--41482065	93	1.8	93	92	2	290	22	22	28	27	1.99
41489470--41489640	93	1.8	93	94	0	306	21	22	28	27	1.99
41489474--41489645	46	3.7	46	79	13	208	21	22	27	27	1.99
41493572--41493630	15	4.2	15	78	16	56	18	13	5	62	1.48
41493572--41493630	29	2.1	27	87	6	82	18	13	5	62	1.48
41493580--41493630	14	3.8	13	78	14	50	21	9	5	62	1.47
41498849--41498875	12	2.2	12	100	0	54	51	0	0	48	1.00
41501846--41501883	14	2.8	14	92	4	60	36	13	0	50	1.42
41504922--41505070	80	1.9	80	81	2	183	22	30	24	22	1.99
41504963--41505070	40	2.7	38	85	8	128	21	29	25	23	1.99
41513037--41513185	80	1.9	80	81	2	183	22	30	24	22	1.99
41513078--41513185	40	2.7	38	85	8	128	21	29	25	23	1.99
41524694--41524953	49	5.4	48	94	2	400	30	9	31	29	1.88
41525055--41525139	37	2.3	37	95	0	152	24	20	34	21	1.97
41527228--41527388	29	5.6	29	98	0	304	26	16	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41527196--41527388	87	2.2	88	90	3	311	25	17	31	24	1.97
41530932--41531192	49	5.4	49	95	0	436	29	9	31	29	1.88
41531296--41531379	37	2.3	37	95	0	150	25	19	34	21	1.96
41539173--41539292	9	13.0	9	69	15	75	31	1	2	64	1.17
41539168--41539258	17	5.1	17	72	16	69	35	2	1	61	1.15
41539173--41539292	19	6.5	18	73	14	75	31	1	2	64	1.17
41539218--41539287	29	2.4	29	77	11	81	30	0	2	67	1.05
41539341--41539368	12	2.3	12	100	0	56	42	0	0	57	0.99
41542788--41542813	6	4.3	6	100	0	52	19	19	15	46	1.85
41545970--41545999	16	1.9	16	93	6	53	33	0	0	66	0.92
41545989--41546051	27	2.3	28	78	15	69	33	3	3	60	1.28
41547282--41547539	127	2.0	127	100	0	516	38	15	14	31	1.88
41549182--41549240	3	20.3	3	93	6	104	33	0	0	66	0.92
41549262--41549292	15	2.1	15	93	0	53	19	9	0	70	1.14
41549300--41549364	26	2.5	25	76	14	69	29	4	4	61	1.36
41549381--41549465	3	27.3	3	69	7	53	24	7	4	63	1.39
41549584--41549619	12	3.0	12	87	0	54	22	0	5	72	1.05
41551338--41551450	56	2.0	56	94	0	199	36	13	31	18	1.89
41553154--41553196	12	3.6	12	96	0	77	25	25	23	25	2.00
41558063--41558213	53	2.8	53	85	4	187	30	26	15	27	1.96
41559959--41560216	40	6.1	40	77	17	195	25	29	24	21	1.99
41560061--41560088	14	2.0	14	100	0	56	14	28	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41560021--41560128	54	2.0	54	96	0	198	25	27	24	23	2.00
41559981--41560168	94	2.0	94	95	0	340	26	28	23	22	1.99
41559959--41560208	134	1.9	134	89	5	389	25	28	23	22	1.99
41566441--41566580	53	2.6	53	82	0	172	30	25	17	26	1.97
41572673--41573018	45	7.7	44	75	9	288	34	19	19	26	1.96
41572674--41572892	89	2.5	89	93	0	366	32	19	21	26	1.97
41574556--41574606	3	17.0	3	92	8	86	33	0	0	66	0.92
41574635--41574670	14	2.6	14	86	0	54	22	8	0	69	1.15
41574669--41574737	26	2.7	25	76	13	77	26	10	2	60	1.42
41574789--41574836	25	1.9	25	86	0	69	22	6	6	64	1.39
41574910--41575031	3	41.7	3	77	12	112	27	3	2	66	1.20
41576275--41576331	28	2.0	28	96	0	105	33	15	7	43	1.74
41581424--41581488	20	3.3	19	77	18	62	75	1	16	6	1.08
41585334--41585405	33	2.2	33	82	7	85	29	5	15	50	1.66
41587952--41588014	17	3.6	18	69	14	60	19	23	28	28	1.98
41587938--41588061	35	3.6	34	84	6	142	20	18	28	33	1.96
41587948--41588026	17	4.5	18	67	10	56	21	21	26	30	1.98
41588212--41588246	2	17.5	2	93	0	61	51	2	0	45	1.16
41589596--41589638	21	2.0	21	95	0	77	41	9	11	37	1.74
41591271--41591312	17	2.5	17	82	14	52	28	0	2	69	1.01
41591337--41591399	19	3.3	19	80	4	72	26	1	7	63	1.31
41591190--41591404	10	22.3	9	66	18	62	32	1	5	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41592300--41592325	2	13.0	2	100	0	52	50	0	0	50	1.00
41592854--41592913	30	2.0	30	100	0	120	26	10	16	46	1.78
41593528--41593835	153	2.0	153	97	0	580	33	13	15	37	1.87
41597945--41598014	35	2.0	35	100	0	140	34	28	5	31	1.81
41606687--41606714	8	3.5	8	100	0	56	21	10	0	67	1.20
41609913--41610058	43	3.4	43	90	3	222	25	21	26	26	2.00
41610635--41610667	16	1.9	18	88	11	52	18	12	18	51	1.76
41611293--41611423	61	2.2	60	84	9	171	40	0	4	54	1.21
41613707--41613807	11	9.2	11	76	4	69	59	25	7	6	1.51
41617131--41617174	22	2.0	22	90	0	70	45	18	27	9	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433