Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  356  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111998301--111998396
19
4.9
20
85
13
121
34
10
18
36
1.85
111998304--111998393
36
2.4
36
85
9
117
34
11
17
36
1.86
111998360--111998403
22
2.0
22
86
0
61
29
9
18
43
1.80
112002271--112002340
35
2.0
35
100
0
140
28
14
17
40
1.88
112006982--112007027
22
2.1
22
100
0
92
36
17
21
23
1.94
112007219--112007724
253
2.0
252
99
0
1003
34
15
18
31
1.92
112009883--112009908
2
13.0
2
100
0
52
50
0
0
50
1.00
112010214--112010297
41
2.0
41
95
4
152
27
17
21
33
1.96
112014113--112014142
14
2.1
14
100
0
60
20
13
46
20
1.83
112014655--112014703
2
24.5
2
100
0
98
48
0
0
51
1.00
112015311--112015385
28
2.7
27
76
12
71
13
10
18
57
1.64
112016296--112016324
5
5.8
5
100
0
58
20
0
0
79
0.74
112020352--112020461
29
3.6
29
76
11
130
29
12
24
33
1.92
112020345--112020480
63
2.2
63
98
0
263
28
11
27
31
1.92
112020796--112020823
5
5.6
5
100
0
56
17
0
0
82
0.68
112021891--112022007
60
1.9
60
94
1
207
47
7
16
28
1.73
112023869--112023944
11
6.8
11
68
24
52
55
2
1
40
1.22
112023869--112023944
37
2.1
36
83
11
93
55
2
1
40
1.22
112028954--112028984
16
1.9
16
93
0
53
74
9
0
16
1.07
112032072--112032106
13
2.7
13
95
0
61
22
40
22
14
1.90
112045151--112045219
33
2.2
31
89
5
102
40
17
5
36
1.74
112051294--112051357
33
2.0
33
84
9
87
28
26
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112051674--112051730
26
2.2
26
80
3
60
24
19
21
35
1.96
112053615--112053660
19
2.4
19
88
3
65
41
8
0
50
1.33
112053606--112053659
20
2.6
21
77
14
58
42
12
0
44
1.43
112054824--112054876
20
2.7
20
91
2
90
39
13
7
39
1.73
112055720--112055860
40
3.5
40
91
2
223
24
26
23
25
2.00
112057121--112057161
21
2.0
21
85
9
57
36
26
2
34
1.70
112057132--112057171
21
1.9
21
84
0
53
37
25
2
35
1.69
112062124--112062157
15
2.3
15
100
0
68
32
17
17
32
1.94
112063006--112063152
40
3.7
40
90
2
226
24
27
22
25
2.00
112064421--112064461
21
2.0
21
85
9
57
36
26
2
34
1.70
112064432--112064471
21
1.9
21
84
0
53
37
25
2
35
1.69
112066662--112066700
21
1.9
21
89
5
62
17
28
25
28
1.98
112068250--112068293
19
2.4
18
85
7
54
40
9
0
50
1.34
112070742--112070773
10
3.3
10
95
4
57
62
0
6
31
1.20
112070761--112070804
17
2.4
18
77
14
54
56
9
0
34
1.31
112070769--112070833
28
2.3
27
76
10
67
49
10
0
40
1.38
112070799--112070829
16
1.9
16
93
0
53
38
9
0
51
1.35
112072588--112072820
39
5.9
39
83
4
256
24
29
20
26
1.99
112074575--112074607
10
3.5
10
84
16
52
0
9
0
90
0.44
112075601--112075639
12
3.2
12
82
7
51
76
0
2
20
0.90
112079315--112079346
10
3.3
10
95
4
57
62
0
6
31
1.20
112079334--112079377
17
2.4
18
77
14
54
56
9
0
34
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112079342--112079406
28
2.3
27
76
10
67
49
10
0
40
1.38
112079372--112079402
16
1.9
16
93
0
53
38
9
0
51
1.35
112090010--112090056
22
2.1
22
100
0
94
31
12
4
51
1.59
112090049--112090090
2
21.0
2
100
0
84
50
0
0
50
1.00
112091357--112091428
31
2.3
30
88
4
99
55
0
9
34
1.33
112096797--112096870
24
3.4
24
75
17
81
35
2
0
62
1.10
112096800--112096878
17
5.3
15
72
22
60
35
2
0
62
1.09
112096797--112096870
21
3.4
22
75
17
75
35
2
0
62
1.10
112098583--112098883
16
18.9
16
64
20
82
60
2
3
33
1.27
112098582--112098849
7
36.9
7
64
21
83
58
2
3
34
1.29
112098582--112098653
20
3.7
20
71
17
62
61
1
1
36
1.14
112098729--112098849
29
4.3
27
73
21
97
61
3
1
33
1.22
112098728--112098879
25
6.2
25
73
17
106
63
2
1
31
1.19
112098680--112098781
47
2.2
49
80
18
119
57
0
4
36
1.27
112098729--112098837
38
3.0
35
77
10
96
61
2
1
33
1.21
112099551--112099575
13
1.9
13
100
0
50
84
0
0
16
0.63
112101185--112101234
25
2.0
25
100
0
100
20
20
24
36
1.95
112104796--112104845
25
2.0
25
100
0
100
20
20
24
36
1.95
112106199--112108004
763
2.4
765
87
2
2605
40
20
14
24
1.90
112109586--112109643
22
2.6
22
81
7
64
41
17
5
36
1.72
112109622--112109658
19
1.9
19
100
0
74
35
16
10
37
1.83
112109625--112109666
19
2.3
19
88
8
61
40
11
11
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112109777--112109815
21
1.9
20
84
5
51
10
2
15
71
1.23
112110014--112110280
45
5.9
45
73
8
220
26
26
14
31
1.95
112110061--112110190
44
2.9
44
83
1
134
28
30
10
30
1.91
112110221--112110591
78
4.8
78
90
2
550
23
23
20
32
1.98
112118182--112118215
17
1.9
18
88
5
52
67
0
0
32
0.91
112118472--112118529
22
2.7
21
76
10
53
41
17
1
39
1.59
112118508--112118580
19
3.9
19
89
7
114
35
15
8
41
1.77
112118698--112118737
21
2.0
20
85
5
53
10
2
15
72
1.21
112118840--112118876
18
2.1
18
100
0
74
45
16
10
27
1.80
112119334--112119368
2
17.5
2
93
0
61
48
0
2
48
1.16
112123308--112123367
17
3.6
17
76
17
72
31
1
10
56
1.42
112123305--112123368
32
2.0
32
100
0
128
31
3
9
56
1.47
112123305--112123368
16
3.9
16
73
20
53
31
3
9
56
1.47
112124594--112124645
16
3.2
16
81
5
52
30
0
1
67
1.02
112126557--112126671
29
4.0
28
78
8
115
26
26
17
28
1.98
112130973--112131087
29
4.0
29
85
6
137
29
27
13
28
1.95
112131146--112131179
18
1.9
18
88
5
52
20
38
23
17
1.93
112132537--112132569
16
2.1
16
100
0
66
12
6
33
48
1.65
112133327--112133391
23
3.0
22
70
6
60
21
21
18
38
1.93
112134277--112134331
24
2.3
24
80
0
65
34
5
5
54
1.46
112141563--112141613
26
2.0
25
84
3
66
52
3
0
43
1.19
112141768--112141856
16
5.6
16
81
5
99
30
21
6
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112141778--112141856
32
2.5
32
85
0
122
29
22
6
41
1.78
112143229--112143338
26
4.2
26
92
0
175
33
5
23
37
1.78
112151798--112151832
17
2.1
17
100
0
70
28
0
17
54
1.43
112151973--112152053
24
3.3
23
75
10
72
17
29
19
33
1.95
112152176--112152227
25
2.1
25
82
7
61
19
25
21
34
1.96
112158047--112158170
63
2.0
63
83
0
158
32
19
22
25
1.97
112162967--112163098
59
2.2
59
91
0
210
39
12
16
31
1.87
112163502--112163555
21
2.6
21
88
5
83
20
5
44
29
1.74
112164261--112164438
43
4.2
43
86
2
238
44
19
7
28
1.78
112164261--112164438
83
2.1
84
86
4
243
44
19
7
28
1.78
112166079--112166127
15
3.2
15
82
2
62
32
38
8
20
1.82
112166412--112166646
62
3.8
62
93
1
362
48
14
12
25
1.78
112166543--112166796
112
2.3
111
87
1
373
46
15
12
25
1.81
112166607--112166703
48
2.0
48
89
0
149
45
13
12
28
1.80
112166657--112166771
34
3.5
33
67
23
91
46
12
13
28
1.79
112166614--112166723
48
2.3
48
80
0
112
48
12
10
29
1.74
112166669--112166771
32
3.2
32
66
24
90
46
12
12
28
1.78
112166655--112166787
64
2.1
64
88
0
194
45
14
13
26
1.81
112166929--112167016
12
7.4
12
71
11
56
52
15
5
26
1.65
112166926--112167022
42
2.3
42
81
8
117
50
17
6
25
1.69
112166929--112167022
18
5.3
18
73
17
63
52
15
6
25
1.67
112167602--112167674
31
2.4
29
82
8
92
21
10
20
46
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112180487--112180527
2
20.5
2
100
0
82
48
0
0
51
1.00
112182532--112182574
22
1.9
23
85
4
61
25
4
0
69
1.07
112186769--112186800
16
1.9
17
93
6
57
65
6
21
6
1.38
112186919--112186974
25
2.3
25
84
3
78
28
21
10
39
1.87
112190546--112190598
25
2.1
25
86
13
74
35
0
1
62
1.06
112190611--112190771
21
7.2
24
70
19
109
35
1
4
59
1.25
112190540--112190839
87
3.4
87
93
2
478
36
1
4
57
1.28
112190699--112190762
24
2.8
22
81
11
76
39
0
4
56
1.20
112194384--112194488
27
3.9
27
92
0
165
23
29
22
23
1.99
112194391--112194506
54
2.1
54
85
0
151
21
30
24
24
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433