genome.fa.s6.2.7.7.80.10.50.1000.336.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  336  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105221195--105221345	40	3.8	40	77	6	137	23	26	23	26	2.00
105221195--105221344	80	1.9	80	83	8	198	22	26	24	26	2.00
105232546--105232628	43	2.1	41	82	17	104	30	2	10	56	1.46
105237608--105237664	28	2.1	27	90	3	87	33	24	24	17	1.96
105240330--105240367	19	2.0	20	85	15	53	39	23	0	36	1.55
105240597--105240766	93	1.8	92	93	1	295	28	28	20	21	1.98
105240592--105240763	45	3.7	46	79	11	208	29	27	20	22	1.98
105247894--105248064	93	1.8	93	89	2	272	29	28	20	21	1.98
105247893--105248061	46	3.7	45	77	12	173	30	27	20	21	1.98
105250000--105250040	21	2.0	20	95	4	73	41	48	4	4	1.46
105255461--105255629	58	2.9	57	93	4	286	28	28	19	23	1.98
105255468--105255626	29	5.5	28	70	14	110	28	27	20	23	1.99
105255783--105256130	43	8.2	43	95	1	576	31	33	23	11	1.90
105255795--105256127	171	2.0	170	94	0	585	31	33	24	11	1.90
105257525--105257597	35	2.1	35	100	0	146	39	19	5	35	1.75
105261556--105261714	29	5.5	28	70	14	110	29	27	19	23	1.98
105261549--105261717	58	2.9	57	91	4	268	28	28	18	23	1.98
105261871--105262218	43	8.2	43	94	0	567	31	32	23	12	1.91
105261883--105262216	128	2.6	129	92	2	559	31	32	23	11	1.91
105261883--105262215	171	2.0	170	93	0	576	31	32	24	11	1.91
105263616--105263688	35	2.1	35	100	0	146	39	19	5	35	1.75
105271218--105271305	20	4.4	20	76	11	74	34	18	9	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105271256--105271325	20	3.5	20	79	7	72	35	18	7	38	1.78
105271479--105271583	23	4.6	22	74	10	77	36	19	20	23	1.95
105271505--105271594	47	2.0	46	88	4	137	33	18	24	23	1.97
105271526--105271618	24	3.8	26	75	16	108	34	20	22	22	1.97
105277877--105277932	20	2.8	20	71	10	51	37	14	8	39	1.77
105277868--105277988	40	3.1	38	79	11	118	34	15	9	39	1.81
105277884--105277971	20	4.4	20	75	11	58	34	15	11	38	1.84
105277922--105277991	20	3.5	20	77	7	72	34	18	10	37	1.84
105277884--105277988	39	2.6	39	79	11	99	34	16	10	39	1.83
105278143--105278224	23	3.6	22	79	8	85	34	20	19	25	1.96
105278144--105278274	45	2.8	48	80	15	123	35	19	20	25	1.96
105288279--105288536	25	10.3	25	66	13	111	59	3	6	30	1.40
105288420--105288498	27	3.1	26	82	10	83	60	1	6	31	1.29
105289423--105289470	22	2.1	22	88	3	69	75	4	16	4	1.12
105292368--105292405	15	2.3	18	86	13	55	42	0	0	57	0.98
105292397--105292449	23	2.3	24	80	9	65	43	1	3	50	1.30
105295178--105295402	47	4.8	48	76	13	189	23	29	18	28	1.97
105295227--105295405	92	1.9	95	87	6	267	23	29	17	29	1.97
105297561--105297728	46	3.7	45	77	17	179	28	29	20	21	1.98
105297564--105297731	93	1.8	90	92	3	282	27	29	20	21	1.98
105298149--105298208	30	2.0	30	90	0	93	30	25	8	36	1.85
105302467--105302495	6	4.8	6	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105305077--105305149	28	2.6	29	91	2	121	24	13	31	30	1.94
105305118--105305247	24	5.4	23	89	6	154	21	16	26	35	1.94
105305132--105305268	72	1.9	72	87	3	204	22	17	25	34	1.96
105305132--105305246	48	2.4	48	97	0	212	20	17	26	35	1.94
105312889--105313027	24	5.8	23	92	6	192	20	17	28	34	1.95
105312913--105313049	72	1.9	72	87	3	204	22	17	25	34	1.96
105312889--105313027	48	2.9	48	91	6	212	20	17	28	34	1.95
105323908--105324093	40	4.7	40	88	5	252	26	26	21	24	1.99
105335752--105335801	24	2.1	24	96	0	91	34	26	22	18	1.96
105336060--105336115	29	1.9	29	82	7	69	17	46	23	12	1.82
105338021--105338095	28	2.6	28	78	2	87	21	36	20	22	1.96
105338079--105338152	29	2.6	29	95	0	139	27	31	14	27	1.95
105345039--105345072	17	2.1	16	88	5	50	29	17	0	52	1.45
105345888--105345962	28	2.6	28	78	2	87	21	36	20	22	1.96
105345946--105346019	29	2.6	29	95	0	139	27	31	14	27	1.95
105352263--105352344	23	3.6	23	98	0	155	42	17	9	30	1.81
105353872--105353972	20	5.3	18	73	21	89	11	24	24	38	1.89
105353872--105354011	39	3.6	39	90	0	199	12	25	24	37	1.91
105353890--105353954	19	3.2	21	75	20	75	12	24	21	41	1.87
105357361--105357402	15	2.8	15	85	0	57	14	16	16	52	1.75
105360055--105360156	39	2.6	39	87	0	132	14	23	22	39	1.91
105364377--105364596	122	1.8	122	84	2	307	30	10	24	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105364596--105364705	40	2.8	39	86	8	150	22	25	30	21	1.99
105372413--105372632	122	1.8	122	84	2	307	30	10	24	34	1.89
105372632--105372741	40	2.8	39	86	8	150	22	25	30	21	1.99
105377568--105377915	27	12.9	27	91	2	520	25	15	20	38	1.92
105378212--105378258	17	2.7	18	86	3	69	19	21	10	48	1.78
105380529--105380596	34	2.0	34	100	0	136	29	14	20	35	1.93
105380922--105381107	40	4.7	40	79	4	162	29	23	25	22	1.99
105380922--105381074	80	1.9	79	83	1	198	28	22	26	23	1.99
105383795--105383861	26	2.5	26	92	2	107	44	19	7	28	1.77
105383758--105383861	27	3.9	26	82	5	118	38	20	10	30	1.86
105383850--105384019	27	6.3	27	88	0	232	34	20	21	24	1.96
105383850--105384019	54	3.1	54	87	0	259	34	20	21	24	1.96
105383850--105384045	27	7.3	27	86	0	185	34	19	20	25	1.96
105383850--105384045	81	2.4	81	83	0	212	34	19	20	25	1.96
105384157--105384221	11	6.1	11	78	7	53	35	12	15	36	1.85
105384159--105384207	21	2.3	21	92	0	80	34	8	18	38	1.80
105384159--105384207	5	9.4	5	78	8	53	34	8	18	38	1.80
105384159--105384220	21	3.0	21	81	9	72	33	11	16	38	1.84
105384255--105384301	25	2.0	24	83	8	60	31	21	21	25	1.98
105390928--105391210	47	6.1	47	96	1	498	30	11	31	26	1.91
105390928--105391210	140	2.0	140	95	1	505	30	11	31	26	1.91
105390928--105391210	93	3.0	94	95	1	498	30	11	31	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105391185--105391320	46	3.0	45	89	1	191	34	8	31	25	1.86
105391510--105391621	37	3.0	37	90	1	179	21	16	30	31	1.96
105392890--105393380	40	12.3	40	92	0	786	25	18	27	27	1.98
105393412--105393546	57	2.4	57	78	9	141	22	18	31	28	1.97
105397041--105397271	47	5.0	47	94	1	385	31	12	30	25	1.92
105397250--105397384	46	3.0	46	85	2	175	34	8	31	25	1.87
105397569--105397680	37	3.0	37	89	1	170	22	16	29	31	1.96
105401590--105401666	29	2.7	29	87	2	102	25	16	29	27	1.97
105401978--105402031	27	2.1	26	86	6	74	48	22	14	14	1.81
105404305--105404502	27	7.3	27	87	2	263	28	25	8	38	1.84
105404534--105404713	81	2.2	81	84	7	240	40	20	8	31	1.82
105404534--105404686	27	5.7	27	87	2	209	39	20	8	30	1.83
105404366--105404712	54	6.4	54	77	5	193	36	21	8	33	1.85
105404677--105404770	27	3.4	27	81	11	118	41	17	8	32	1.79
105404828--105404892	27	2.4	27	82	5	78	35	16	24	23	1.95
105405600--105405666	20	3.3	20	89	4	100	40	10	17	31	1.84
105405724--105405851	52	2.5	51	90	6	199	27	21	21	28	1.99
105405724--105405851	26	5.0	26	85	3	165	27	21	21	28	1.99
105405984--105406075	42	2.2	42	88	0	130	30	15	19	34	1.93
105406099--105406177	31	2.5	31	95	0	140	29	17	26	26	1.98
105415588--105415670	34	2.5	34	88	2	114	27	16	24	31	1.97
105415660--105415718	18	3.3	18	80	0	73	40	15	22	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105416086--105416173	27	3.3	27	80	0	104	18	18	22	40	1.91
105416167--105416283	27	4.3	27	82	0	135	35	14	17	31	1.90
105416169--105416283	54	2.1	54	83	0	149	36	14	17	31	1.90
105417044--105417125	26	3.2	26	96	0	155	30	6	26	36	1.81
105424109--105424190	26	3.2	26	96	0	155	30	6	26	36	1.81
105426767--105426897	40	3.3	40	85	0	172	24	27	21	26	1.99
105426784--105426934	40	3.8	40	85	4	180	23	25	22	28	1.99
105434686--105434813	40	3.2	40	86	0	166	23	28	21	26	1.99
105434703--105434852	40	3.8	40	84	4	160	24	26	22	27	2.00
105445264--105445319	29	1.9	29	88	0	85	23	28	28	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433