genome.fa.s6.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  312  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97340454--97340562	40	2.7	40	81	0	119	21	24	30	23	1.99
97340411--97340562	80	1.9	80	81	8	184	25	23	27	23	2.00
97347025--97347079	21	2.6	21	76	0	56	14	18	21	45	1.85
97350154--97350216	27	2.3	27	94	0	117	30	11	20	38	1.87
97351242--97351270	15	1.9	15	100	0	58	27	0	0	72	0.85
97352423--97352538	51	2.3	51	80	0	133	40	6	12	41	1.67
97355227--97355342	51	2.3	51	80	0	133	40	6	12	41	1.67
97356463--97356563	30	3.2	30	64	26	73	22	16	18	41	1.90
97356446--97356573	65	2.0	65	95	0	229	24	15	18	41	1.89
97358771--97358800	3	10.0	3	92	0	51	33	3	0	63	1.11
97360407--97360484	26	2.9	26	75	7	66	38	17	15	28	1.91
97366165--97366213	17	2.8	18	74	22	50	24	18	22	34	1.96
97367035--97367201	40	4.2	40	78	6	160	25	22	27	24	2.00
97374176--97374224	17	2.8	18	74	22	50	24	18	22	34	1.96
97375045--97375148	40	2.6	39	81	4	118	28	22	27	21	1.99
97385234--97385274	21	2.0	21	90	0	64	14	21	19	43	1.87
97385240--97385285	21	2.2	21	84	0	56	15	15	21	47	1.81
97398441--97398628	49	3.8	49	85	2	268	26	18	25	29	1.98
97398440--97398628	100	1.9	100	94	0	333	26	18	25	29	1.98
97405646--97405793	35	4.2	35	78	3	136	43	20	8	27	1.81
97413223--97413377	35	4.4	35	75	8	100	45	17	7	29	1.76
97415206--97415336	65	2.0	65	96	0	244	29	4	19	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97422195--97422392	27	7.3	27	87	2	263	27	24	8	38	1.85
97422195--97422392	81	2.4	81	90	1	299	27	24	8	38	1.85
97422424--97422574	27	5.6	27	82	6	164	41	21	8	28	1.82
97422424--97422573	81	1.9	81	84	5	205	42	20	8	28	1.82
97422678--97422755	27	2.9	27	77	11	79	39	19	17	23	1.92
97423565--97423647	25	3.4	24	86	8	105	27	25	22	24	2.00
97423782--97423915	42	3.2	42	96	0	241	31	14	20	33	1.93
97423939--97424084	31	4.7	31	93	0	249	29	16	25	28	1.97
97426372--97426523	80	1.9	80	80	8	175	23	26	23	25	2.00
97434749--97434849	28	3.5	29	86	6	125	29	27	13	28	1.95
97444114--97444155	12	3.4	12	75	18	50	33	28	0	38	1.58
97444110--97444160	25	2.0	25	96	0	93	33	25	0	41	1.56
97465070--97465099	15	1.9	16	93	6	53	20	20	6	53	1.67
97465999--97466167	46	3.7	46	84	9	188	20	28	21	29	1.98
97470026--97470074	25	2.0	25	88	8	73	32	0	2	65	1.04
97470100--97470174	26	2.9	26	80	9	75	29	1	4	65	1.19
97470104--97470163	31	2.0	32	83	9	81	26	1	3	68	1.15
97470127--97470168	14	3.1	14	76	13	52	33	0	4	61	1.17
97470530--97470571	18	2.4	18	84	4	59	16	0	11	71	1.14
97482331--97482598	90	3.0	90	88	1	376	30	13	26	29	1.93
97482288--97483229	45	21.0	44	67	11	301	30	14	26	27	1.95
97482405--97483230	135	6.1	136	71	12	513	30	15	26	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97482543--97483230	90	7.6	89	85	4	730	31	15	26	27	1.96
97482362--97482823	225	2.1	225	90	1	730	30	14	26	28	1.95
97482587--97483230	270	2.4	270	88	1	934	30	15	26	27	1.96
97482360--97483240	225	3.9	223	74	11	726	31	14	26	27	1.95
97484723--97484773	25	2.0	25	84	7	66	29	0	3	66	1.09
97484811--97484865	26	2.1	26	86	3	74	32	1	3	61	1.24
97484818--97484859	14	3.1	14	76	13	52	33	0	4	61	1.17
97485223--97485257	18	1.9	18	88	0	52	14	0	8	77	0.99
97486430--97486520	28	3.4	28	76	11	93	37	12	25	25	1.90
97486544--97486793	51	4.9	51	91	0	374	33	11	25	30	1.90
97505446--97505475	15	1.9	16	93	6	53	20	20	6	53	1.67
97506359--97506535	46	3.8	44	78	12	162	21	28	20	28	1.98
97511291--97511365	26	2.9	26	80	9	75	29	1	4	65	1.19
97511295--97511354	31	2.0	32	83	9	81	26	1	3	68	1.15
97511318--97511359	14	3.1	14	76	13	52	33	0	4	61	1.17
97511709--97511743	18	1.9	18	88	0	52	17	0	8	74	1.06
97522361--97522464	53	2.0	53	84	5	140	40	17	27	14	1.88
97523358--97523892	90	5.9	90	89	0	775	31	14	26	27	1.95
97523837--97524617	90	8.7	90	87	4	836	31	14	26	27	1.95
97523660--97524107	225	2.0	225	89	0	689	31	14	26	28	1.95
97523572--97524197	315	2.0	315	90	0	991	31	14	26	28	1.95
97523884--97524617	270	2.7	269	89	1	1112	30	14	26	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97523480--97524287	405	2.0	405	90	0	1276	30	14	26	27	1.95
97525078--97525103	12	2.2	12	100	0	52	15	46	15	23	1.83
97525392--97525490	50	2.0	50	97	0	189	26	10	9	54	1.63
97526207--97526316	31	3.5	33	68	14	72	30	2	3	62	1.26
97526280--97526321	14	3.1	14	76	13	52	33	0	4	61	1.17
97526684--97526718	18	1.9	18	88	0	52	17	0	8	74	1.06
97527897--97527973	24	3.0	24	78	14	91	37	16	22	23	1.94
97527893--97527984	28	3.4	27	79	13	118	34	15	25	25	1.94
97528008--97528262	51	5.0	51	89	1	377	33	11	24	30	1.90
97531345--97531373	5	5.8	5	100	0	58	0	20	0	79	0.74
97534624--97534881	40	6.5	40	83	2	297	24	22	27	26	2.00
97542762--97542942	40	4.6	40	91	2	278	24	22	27	25	2.00
97549260--97549430	93	1.8	93	96	0	315	28	29	21	21	1.98
97549255--97549427	46	3.7	46	80	13	219	28	28	21	21	1.98
97549846--97549905	30	2.0	30	90	0	93	30	25	8	36	1.85
97555910--97555952	20	2.2	20	82	0	50	44	2	2	51	1.27
97556834--97557003	45	3.7	47	77	17	169	27	29	21	21	1.99
97556834--97557003	93	1.8	93	94	1	306	27	29	21	21	1.99
97557439--97557487	13	3.6	13	73	10	53	18	30	8	42	1.79
97557433--97557508	28	2.7	29	97	2	145	23	28	6	40	1.80
97557452--97557503	15	3.5	15	71	12	54	23	25	7	44	1.79
97560103--97560136	17	2.0	17	100	0	68	64	0	5	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97560188--97560226	19	2.0	19	85	5	51	56	5	7	30	1.49
97560198--97560240	11	4.2	11	80	17	56	53	6	2	37	1.41
97560283--97560329	21	2.2	21	78	14	53	51	0	6	42	1.27
97560454--97560497	23	1.9	23	85	0	61	56	4	9	29	1.50
97560522--97560701	25	7.6	23	70	21	74	55	3	6	35	1.41
97560547--97560684	22	6.2	22	72	18	90	56	4	3	35	1.37
97560566--97560603	16	2.5	15	84	12	51	63	0	0	36	0.95
97560553--97560660	11	9.9	11	66	16	55	58	3	2	35	1.30
97560630--97560701	25	2.8	25	85	6	90	54	4	6	34	1.47
97563612--97563671	30	2.0	30	86	0	84	40	6	25	28	1.80
97568294--97568462	92	1.8	92	94	2	304	21	21	29	27	1.98
97568297--97568467	45	3.7	46	79	14	210	21	21	28	28	1.98
97575675--97575804	64	2.0	64	96	0	242	32	6	22	39	1.79
97580680--97580706	10	2.7	10	100	0	54	37	22	11	29	1.89
97583572--97583630	30	2.0	30	86	0	82	32	20	11	35	1.89
97587486--97587665	68	2.8	63	79	9	175	29	17	28	25	1.97
97595516--97595555	20	2.0	21	85	5	55	37	20	0	42	1.52
97596878--97597033	43	3.6	44	84	4	201	26	16	25	32	1.96
97599664--97599706	23	1.9	23	90	4	70	53	0	0	46	1.00
97601835--97601987	40	3.8	40	78	9	143	22	23	28	25	2.00
97614770--97614805	18	1.9	19	88	5	56	58	8	5	27	1.50
97616920--97616951	15	2.0	17	88	11	50	25	0	31	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97631357--97631523	40	4.2	40	77	4	151	22	26	23	27	2.00
97639656--97639768	27	4.2	27	82	0	118	33	16	23	26	1.96
97640217--97640265	22	2.2	22	85	7	64	22	28	22	26	1.99
97640253--97640319	27	2.5	27	97	0	125	23	22	22	31	1.98
97640623--97640700	6	12.7	6	70	20	54	17	19	15	47	1.83
97640623--97640679	25	2.3	25	93	0	96	17	21	15	45	1.85
97640713--97640776	34	2.0	32	84	9	85	23	18	25	32	1.97
97645986--97646017	16	2.0	16	100	0	64	50	0	12	37	1.41
97646108--97646248	63	2.3	61	84	8	169	40	2	3	53	1.30
97646450--97646502	16	3.3	16	91	0	88	28	30	7	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433