Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  119  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36301899--36301943
23
2.0
23
100
0
90
24
22
4
48
1.68
36306537--36306582
23
2.0
24
86
4
67
28
0
8
63
1.24
36307422--36307457
17
2.2
17
90
5
56
27
19
8
44
1.79
36312442--36312618
90
2.0
90
98
0
345
35
16
7
40
1.77
36313182--36313206
13
1.9
13
100
0
50
56
20
0
24
1.43
36314367--36314498
44
3.0
44
93
0
219
31
18
10
39
1.85
36321092--36321128
5
7.4
5
88
11
58
16
2
0
81
0.81
36321870--36321935
25
2.6
25
88
4
80
46
15
13
24
1.81
36326437--36326537
28
3.5
28
86
6
114
29
13
26
29
1.94
36334345--36334445
28
3.5
28
86
6
114
29
13
26
29
1.94
36336625--36336662
5
7.4
5
88
5
58
15
2
0
81
0.80
36337364--36337411
19
2.5
20
93
3
80
41
6
8
43
1.60
36337364--36337435
19
3.8
18
84
12
74
43
5
5
45
1.50
36337425--36337464
11
3.5
11
83
12
53
62
2
0
35
1.09
36337688--36337718
15
2.1
15
100
0
62
41
6
12
38
1.69
36337927--36338116
10
20.7
9
67
21
83
60
2
2
35
1.23
36337927--36338116
18
10.3
18
69
19
83
60
2
2
35
1.23
36337916--36338002
35
2.5
35
80
14
90
63
1
2
33
1.15
36337919--36338086
9
18.3
9
68
20
73
60
2
2
34
1.22
36338025--36338117
48
1.9
48
84
4
125
60
3
3
33
1.29
36338546--36338581
11
3.5
11
92
7
58
27
0
0
72
0.85
36338554--36338613
21
2.9
20
83
11
68
30
0
5
65
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36338514--36338612
30
3.3
31
76
7
96
29
3
6
61
1.35
36338719--36338797
20
3.8
21
73
15
58
34
2
3
59
1.29
36348570--36348696
63
2.0
63
100
0
254
25
26
12
35
1.92
36348841--36348871
13
2.3
14
94
5
55
70
0
0
29
0.87
36351154--36351257
40
2.6
40
83
1
120
24
31
21
23
1.98
36353145--36353203
29
2.0
31
83
6
77
49
10
11
28
1.72
36353350--36353417
31
2.2
31
83
0
82
30
10
13
45
1.76
36353627--36353653
13
2.1
13
100
0
54
37
14
22
25
1.93
36362925--36363090
59
2.8
58
86
6
217
22
22
6
47
1.74
36362997--36363090
29
3.2
28
71
20
84
23
22
6
47
1.74
36376979--36377120
57
2.5
57
81
3
160
31
21
19
28
1.97
36378978--36379084
50
2.1
50
98
0
205
43
1
15
38
1.58
36378975--36379062
26
3.5
26
62
12
65
43
2
19
35
1.64
36406401--36406594
55
3.6
53
76
3
163
20
22
17
39
1.92
36410117--36410179
26
2.5
26
94
2
110
39
19
6
34
1.77
36410318--36410491
43
4.0
43
71
10
113
33
26
15
24
1.95
36412049--36412120
35
2.1
35
100
0
144
36
8
11
44
1.70
36416273--36416316
20
2.2
20
87
0
61
22
25
20
31
1.98
36416328--36416387
20
3.0
20
75
0
66
30
20
15
35
1.93
36416290--36416388
40
2.5
40
84
0
135
29
21
15
34
1.94
36420897--36420966
31
2.3
31
73
9
74
41
2
2
52
1.31
36421807--36421839
10
3.4
10
87
8
50
39
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36421799--36421839
19
2.1
20
90
4
66
36
0
0
63
0.95
36423474--36423545
20
3.8
20
73
10
62
47
0
1
51
1.09
36433295--36433357
28
2.3
28
81
13
69
44
0
4
50
1.23
36433575--36433618
21
2.1
21
95
0
79
29
15
13
40
1.86
36438845--36438887
18
2.3
18
92
4
68
34
4
25
34
1.77
36440449--36440474
2
13.0
2
100
0
52
50
0
0
50
1.00
36443333--36443375
20
2.3
19
84
15
54
53
13
4
27
1.60
36443926--36443981
16
3.3
16
73
16
51
32
3
0
64
1.11
36447014--36447038
11
2.3
11
100
0
50
8
28
0
64
1.22
36448698--36448805
44
2.4
44
87
3
144
29
23
13
33
1.93
36458048--36458086
21
1.9
21
89
5
62
46
0
0
53
1.00
36458762--36458808
6
7.8
6
100
0
94
48
34
0
17
1.47
36466314--36466350
18
2.1
18
89
0
56
40
13
8
37
1.74
36467242--36467278
2
19.0
2
94
5
67
48
0
0
51
1.00
36469400--36469523
64
1.9
64
85
0
167
17
26
25
30
1.97
36473081--36473241
46
3.5
47
85
9
183
27
19
29
23
1.98
36474813--36474844
15
2.1
15
94
0
55
40
15
21
21
1.91
36476723--36476778
29
1.9
29
100
0
112
32
33
10
23
1.89
36481745--36481910
43
3.9
43
76
3
158
33
24
14
27
1.94
36496617--36496786
46
3.7
46
79
7
200
29
28
20
22
1.98
36496625--36496795
93
1.8
93
91
0
279
28
27
21
23
1.99
36496668--36496811
46
3.1
45
73
21
120
28
27
20
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36510131--36510346
46
4.6
45
70
19
142
28
18
31
22
1.97
36531755--36531798
22
2.0
22
100
0
88
36
18
9
36
1.82
36532693--36534141
725
2.0
723
96
0
2652
32
18
10
38
1.84
36546881--36546925
19
2.4
19
82
17
58
33
2
0
64
1.06
36547252--36547296
19
2.3
20
75
17
51
33
2
2
62
1.20
36552216--36552249
18
1.9
18
88
5
52
55
0
11
32
1.36
36552903--36553068
82
2.0
82
91
2
271
43
1
18
35
1.61
36558939--36559111
40
4.3
40
88
5
158
24
25
22
27
2.00
36558939--36559163
80
2.8
79
80
8
260
24
25
22
27
2.00
36558969--36559163
40
4.9
40
87
4
236
24
26
22
27
2.00
36569091--36569132
9
4.8
9
97
2
77
76
0
0
23
0.79
36578765--36578793
15
1.9
15
100
0
58
62
6
6
24
1.45
36579138--36579204
19
3.6
19
86
8
102
35
10
16
37
1.83
36579127--36579213
36
2.4
36
75
9
106
39
9
16
35
1.80
36580695--36580769
24
3.1
24
84
0
87
26
22
32
18
1.97
36580822--36580848
2
13.5
2
100
0
54
51
0
0
48
1.00
36582629--36582669
15
2.7
15
88
3
55
36
26
2
34
1.70
36583856--36584125
40
6.8
40
72
3
179
21
15
25
38
1.92
36583909--36584108
80
2.5
80
85
1
267
19
17
26
37
1.93
36583875--36584102
120
1.9
120
78
0
251
19
16
26
38
1.92
36583925--36584184
80
3.3
79
80
3
247
20
16
25
38
1.93
36587113--36587145
13
2.5
13
95
0
57
33
21
0
45
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36588422--36588487
26
2.5
26
85
4
89
28
7
27
36
1.84
36588422--36588487
13
5.1
13
77
14
73
28
7
27
36
1.84
36594342--36594416
24
3.1
24
80
0
78
30
24
26
18
1.98
36595661--36595721
32
1.9
32
96
0
113
59
11
18
11
1.61
36597351--36597388
16
2.3
17
86
4
60
39
2
0
57
1.12
36600784--36600829
21
2.2
21
92
0
74
76
2
0
21
0.90
36600784--36600823
11
3.7
11
80
6
55
77
2
0
20
0.88
36600785--36600855
27
2.7
26
81
14
74
71
4
1
22
1.11
36605263--36605332
25
2.8
25
88
0
104
28
22
22
25
1.99
36605378--36605416
10
3.8
10
86
6
60
33
17
17
30
1.94
36617407--36617447
17
2.4
18
80
8
50
39
2
9
48
1.49
36636240--36636414
89
2.0
89
95
0
314
41
17
11
29
1.84
36640305--36640348
22
2.0
22
82
8
54
45
0
15
38
1.47
36641400--36641501
34
3.0
33
72
12
89
24
24
21
29
1.99
36641354--36641636
143
2.0
144
85
0
388
24
22
19
33
1.97
36645494--36645539
2
23.0
2
100
0
92
50
0
0
50
1.00
36645552--36645586
6
5.8
6
90
10
54
17
28
0
54
1.43
36653551--36653592
12
3.2
13
86
10
50
23
4
7
64
1.38
36654834--36654899
27
2.4
28
80
12
75
34
22
15
27
1.94
36655715--36655754
20
2.0
20
85
9
55
17
12
5
65
1.44
36660771--36660796
6
4.3
6
100
0
52
50
15
15
19
1.79
36660953--36660999
21
2.3
21
85
3
69
42
17
6
34
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36662318--36662363
25
1.9
24
86
8
67
45
2
0
52
1.13
36662934--36662977
21
2.1
21
100
0
88
59
9
4
27
1.48
36669426--36669513
45
2.0
45
90
0
140
44
13
18
23
1.85
36686152--36686176
12
2.1
12
100
0
50
56
0
0
44
0.99
36687176--36687214
19
2.1
19
85
9
53
43
2
2
51
1.29
36688787--36688863
38
2.0
38
100
0
154
32
12
28
25
1.93
36690674--36690707
17
2.0
17
88
0
50
76
0
8
14
1.01
36690744--36690769
9
2.9
9
100
0
52
34
0
34
30
1.58
36692253--36692284
15
2.1
16
94
5
57
46
0
21
31
1.52
36694248--36694323
28
2.8
28
80
9
77
61
7
2
27
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433