Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  135  of  433  ( 51894 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41617727--41617845
57
2.1
57
87
0
166
30
14
15
40
1.86
41619901--41619930
16
1.9
15
93
6
51
33
23
0
43
1.54
41620128--41620476
50
7.0
50
75
8
343
27
25
19
27
1.99
41620128--41620476
151
2.3
149
88
4
508
27
25
19
27
1.99
41632691--41632722
10
3.3
10
95
4
57
62
0
6
31
1.20
41633354--41633397
16
2.9
15
80
9
54
4
11
2
81
0.92
41633352--41633403
15
3.4
15
78
10
61
5
9
1
82
0.90
41633529--41633758
118
1.9
118
89
1
354
29
29
17
23
1.97
41634672--41634732
6
9.7
6
86
11
70
80
0
1
18
0.80
41634672--41634725
11
4.8
11
82
13
74
79
0
0
20
0.73
41634677--41634726
7
7.4
7
84
10
52
80
0
0
20
0.72
41641069--41641116
20
2.5
20
86
10
64
64
2
8
25
1.32
41642443--41642617
49
3.6
49
77
10
171
30
21
28
20
1.98
41642443--41642669
49
4.7
49
73
10
155
30
20
27
21
1.98
41643949--41643990
22
2.0
22
85
4
59
9
40
28
21
1.84
41650102--41650149
26
1.9
24
87
8
69
64
4
0
31
1.12
41650120--41650178
21
2.8
22
85
7
70
69
6
0
23
1.12
41652191--41652371
40
4.5
40
80
7
197
24
25
23
25
2.00
41652191--41652369
80
2.2
81
86
3
245
24
26
24
25
2.00
41653077--41653112
2
18.0
2
100
0
72
50
0
0
50
1.00
41660255--41660434
40
4.5
40
81
6
204
23
26
23
26
2.00
41660255--41660432
79
2.2
81
85
4
236
23
26
24
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41666322--41666471
40
3.8
40
78
8
139
26
22
28
23
1.99
41666357--41666487
40
3.3
40
80
2
156
24
22
28
25
1.99
41668665--41668824
50
3.2
50
77
8
166
26
25
18
30
1.98
41668697--41668820
48
2.5
50
84
2
153
27
25
18
29
1.98
41676655--41676827
46
3.7
46
79
11
201
21
20
27
30
1.98
41676652--41676822
93
1.8
93
92
2
290
21
20
28
29
1.98
41678328--41678524
48
4.1
48
77
2
189
26
24
17
30
1.97
41678339--41678529
96
2.0
97
85
1
258
27
24
17
30
1.97
41682045--41682221
50
3.6
50
80
6
209
25
25
18
29
1.98
41682045--41682230
98
1.9
98
85
4
259
25
26
18
29
1.98
41684182--41684357
46
3.8
46
79
12
216
20
21
29
28
1.98
41684179--41684350
93
1.8
93
96
0
317
20
21
29
27
1.98
41687519--41687577
30
2.0
30
93
0
100
28
15
25
30
1.96
41687909--41688032
46
2.7
45
80
7
135
26
19
30
23
1.98
41693230--41693346
39
3.0
39
87
0
162
23
22
27
27
1.99
41695742--41695804
32
1.9
34
87
6
94
58
0
9
31
1.30
41695858--41695910
17
3.2
16
79
10
61
71
0
3
24
1.02
41696352--41696378
9
3.0
9
100
0
54
66
0
0
33
0.92
41699246--41700847
177
9.1
177
89
2
2388
26
22
19
31
1.97
41699205--41699465
133
2.0
134
81
6
316
25
22
19
32
1.98
41711155--41711181
12
2.2
12
100
0
54
18
29
14
37
1.91
41719189--41719306
28
4.2
28
82
6
123
26
32
12
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41736248--41736282
2
17.5
2
100
0
70
48
0
0
51
1.00
41736379--41736434
18
3.2
18
72
20
55
30
1
3
64
1.21
41736437--41736523
20
4.5
20
74
14
76
33
5
2
58
1.34
41737392--41737448
20
2.8
20
76
10
62
45
10
10
33
1.73
41737608--41737654
21
2.2
22
78
17
55
17
2
17
63
1.40
41741109--41741159
21
2.7
18
75
18
50
68
0
0
31
0.90
41742635--41742677
16
2.7
16
82
10
52
41
2
2
53
1.26
41743412--41743482
18
4.0
18
80
7
74
69
5
0
25
1.10
41743414--41743482
36
1.9
35
82
8
86
68
5
0
26
1.12
41743416--41743500
9
10.0
9
66
25
51
68
4
0
27
1.09
41746412--41746446
15
2.3
15
95
0
61
17
0
20
62
1.32
41748419--41748471
21
2.5
21
84
0
70
30
33
9
26
1.88
41748780--41748830
20
2.7
18
85
11
66
29
3
7
58
1.44
41748839--41748912
20
3.8
20
78
18
75
36
0
1
62
1.04
41757398--41757456
27
2.2
27
82
11
68
27
13
22
37
1.91
41760980--41761042
24
2.7
23
85
4
81
22
23
20
33
1.97
41760981--41761063
23
3.5
24
82
6
91
24
22
20
32
1.98
41761187--41761321
19
7.1
19
71
13
91
34
8
18
37
1.82
41761220--41761321
18
5.4
19
69
11
57
33
10
18
37
1.86
41761193--41761327
57
2.4
57
87
3
182
34
8
19
37
1.83
41765111--41765180
27
2.5
28
86
2
97
32
25
14
27
1.94
41765188--41765294
42
2.5
42
95
0
187
23
33
14
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41770372--41770500
56
2.2
58
84
4
163
31
13
25
28
1.94
41770372--41770500
30
4.5
30
84
8
160
31
13
25
28
1.94
41772952--41773021
27
2.5
28
86
2
97
32
25
14
27
1.94
41773029--41773135
42
2.5
42
96
0
196
22
33
14
28
1.94
41780436--41780460
12
2.1
12
100
0
50
8
20
40
32
1.81
41784009--41784051
22
2.0
22
85
0
59
39
0
4
55
1.20
41787485--41787561
28
2.8
26
77
11
64
27
23
10
38
1.87
41787499--41787570
28
2.6
28
86
0
90
29
26
12
31
1.93
41816776--41816844
33
2.1
34
91
2
113
26
26
7
40
1.81
41822829--41822884
28
2.0
28
89
0
85
46
16
16
21
1.84
41825585--41825614
15
1.9
16
93
6
53
43
0
0
56
0.99
41831578--41831784
53
3.8
53
77
3
189
37
19
23
19
1.94
41836989--41837174
48
3.9
48
80
3
212
26
31
16
26
1.96
41840376--41840529
80
1.9
80
83
0
200
24
26
21
27
1.99
41840322--41840529
40
5.2
40
81
1
175
22
26
23
27
1.99
41846889--41847109
48
4.6
48
85
0
253
26
30
16
25
1.97
41848910--41848960
10
5.2
9
80
15
57
80
5
13
0
0.89
41848983--41849031
9
5.7
9
82
4
57
73
4
0
22
1.00
41848979--41849039
25
2.4
25
79
17
72
73
4
0
21
1.01
41852756--41852781
13
2.0
13
100
0
52
38
7
30
23
1.83
41859333--41859979
96
6.6
96
88
6
900
36
6
25
31
1.81
41859333--41859979
144
4.4
145
87
6
949
36
6
25
31
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41859667--41859830
52
2.9
57
77
12
203
37
4
23
34
1.77
41859619--41859830
112
1.9
108
87
3
307
36
5
24
33
1.78
41859340--41859976
48
12.9
50
88
6
817
36
6
25
31
1.81
41860131--41860239
37
2.9
37
94
0
182
22
17
31
29
1.96
41863164--41863238
30
2.5
30
85
8
107
18
25
30
25
1.98
41868758--41868972
46
4.6
46
78
5
209
30
20
27
22
1.98
41868997--41869114
49
2.4
49
85
4
148
30
22
25
21
1.99
41872052--41872142
28
3.2
28
86
7
123
30
23
24
21
1.99
41872248--41872312
28
2.3
28
91
0
103
32
7
26
33
1.85
41880866--41881037
49
3.6
49
79
8
167
27
22
26
22
1.99
41886766--41886837
37
1.9
37
94
0
126
20
11
29
38
1.87
41892472--41892874
216
1.9
216
92
0
680
27
12
18
41
1.87
41894229--41894401
46
3.7
46
79
10
199
21
20
29
28
1.98
41894223--41894394
93
1.8
93
92
0
290
21
21
29
27
1.99
41897178--41897357
6
29.8
6
74
15
149
48
12
16
21
1.79
41897178--41897315
73
1.9
73
95
0
249
48
12
17
21
1.80
41897515--41897613
27
3.7
26
86
5
117
36
21
22
20
1.95
41897771--41897835
22
3.0
22
82
8
87
35
23
21
20
1.96
41898260--41898544
27
10.3
27
83
6
311
23
20
20
36
1.95
41898360--41898438
35
2.3
35
88
0
122
18
18
20
41
1.90
41898296--41898510
116
1.9
116
91
2
351
23
20
20
36
1.95
41898529--41898959
27
16.1
27
79
7
204
34
7
23
34
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41898682--41898935
54
4.7
54
89
0
391
38
6
25
30
1.80
41898682--41898935
81
3.1
81
96
0
454
38
6
25
30
1.80
41901432--41901621
39
4.8
39
91
1
274
25
20
28
25
1.99
41901432--41901674
78
3.1
79
84
5
244
25
19
28
26
1.99
41903376--41903547
93
1.8
93
91
2
283
27
29
20
22
1.99
41903368--41903541
46
3.8
45
77
10
199
28
28
20
22
1.99
41903927--41904006
15
5.4
15
80
7
92
58
13
17
10
1.62
41904984--41905033
15
3.4
15
86
2
66
10
18
12
60
1.59
41907411--41907582
46
3.7
46
77
10
188
21
20
29
29
1.98
41907405--41907575
93
1.8
92
91
1
279
21
21
28
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433