genome.fa.s6.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  160  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49830857--49830926	27	2.6	27	93	2	113	28	27	14	30	1.95
49832840--49832874	18	1.9	18	100	0	70	28	25	22	22	1.99
49850649--49850686	19	2.0	19	89	0	58	50	7	13	28	1.69
49857444--49857476	17	1.9	18	88	11	52	42	12	0	45	1.41
49860566--49860612	21	2.3	21	96	3	87	19	21	38	21	1.94
49861813--49861939	56	2.3	56	84	4	168	24	3	3	69	1.18
49864416--49864544	48	2.7	48	79	4	134	24	18	22	34	1.96
49874940--49875011	25	2.9	25	81	4	92	29	22	22	26	1.99
49878235--49878334	27	3.5	28	84	5	121	34	28	13	25	1.93
49879179--49879203	13	1.9	13	100	0	50	56	32	0	12	1.36
49897824--49897857	17	2.0	17	88	0	50	52	5	5	35	1.50
49899394--49899467	38	1.9	38	94	0	130	54	5	6	33	1.50
49899405--49899466	18	3.3	18	68	16	54	53	4	6	35	1.48
49900362--49900438	40	2.0	40	94	5	140	49	1	2	46	1.23
49900910--49901003	28	3.2	28	74	11	91	60	3	5	30	1.34
49903512--49903564	25	2.3	23	87	9	72	73	1	0	24	0.93
49912006--49912030	12	2.1	12	100	0	50	44	24	0	32	1.54
49913401--49913456	22	2.4	24	82	5	62	46	10	5	37	1.62
49916525--49916563	2	19.5	2	100	0	78	48	0	0	51	1.00
49918756--49918906	40	3.8	40	79	6	155	25	22	27	23	2.00
49926760--49926910	40	3.8	40	79	6	155	25	22	27	23	2.00
49932377--49932458	39	2.1	39	90	0	128	23	29	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49934627--49934670	2	22.0	2	100	0	88	50	0	0	50	1.00
49936906--49937390	47	10.3	47	89	0	745	28	31	9	31	1.88
49936906--49937389	94	5.1	94	96	0	869	27	31	9	31	1.88
49943225--49943347	33	3.7	33	73	9	99	33	16	23	26	1.96
49945046--49945083	12	3.2	12	88	0	58	21	52	13	13	1.73
49945379--49945428	25	2.0	26	84	11	68	30	0	4	66	1.10
49947114--49947159	2	23.0	2	90	0	74	52	45	0	2	1.13
49949358--49949403	14	3.4	14	78	3	58	60	0	2	36	1.09
49949388--49949463	19	3.9	20	73	16	70	55	0	3	40	1.18
49953513--49953555	19	2.4	18	85	11	61	44	13	4	37	1.65
49953546--49953581	14	2.5	15	86	13	58	52	13	0	33	1.41
49955482--49955532	21	2.6	19	76	11	57	5	17	3	72	1.20
49956544--49956583	10	4.0	10	100	0	80	90	0	10	0	0.47
49958582--49958713	59	2.3	58	97	1	246	37	14	24	24	1.92
49958552--49958713	88	1.8	89	90	1	263	35	14	24	25	1.93
49958582--49958713	29	4.5	29	97	1	246	37	14	24	24	1.92
49961165--49961207	10	4.1	10	80	11	50	53	27	4	13	1.60
49961909--49962067	43	3.7	42	81	12	171	31	27	18	22	1.97
49964449--49964491	19	2.4	18	85	11	61	44	13	4	37	1.65
49964482--49964517	14	2.5	15	86	13	58	52	13	0	33	1.41
49975666--49975721	14	4.0	14	85	0	76	21	30	5	42	1.75
49975657--49975720	28	2.3	28	88	0	92	25	31	3	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49978204--49978423	40	5.6	40	82	4	250	25	26	24	24	2.00
49981558--49981587	2	15.0	2	92	0	51	46	0	0	53	1.00
49986240--49986271	14	2.4	13	90	10	55	18	6	12	62	1.50
49987465--49987651	72	2.6	70	81	6	196	30	27	18	23	1.98
49994317--49994376	29	2.1	29	100	0	120	41	25	13	20	1.88
49994472--49994619	72	2.1	72	83	5	183	31	27	16	24	1.96
50002089--50002171	30	2.8	30	81	0	103	13	31	33	21	1.92
50003165--50003280	33	3.5	33	85	1	153	26	26	14	31	1.95
50003188--50003307	33	3.7	31	78	11	107	29	24	14	32	1.94
50003294--50003338	23	2.0	23	86	8	65	24	22	13	40	1.90
50004081--50004128	21	2.2	22	78	14	55	37	14	0	47	1.44
50010562--50010677	33	3.5	33	75	1	99	27	25	13	33	1.94
50010691--50010735	23	2.0	23	91	8	74	22	22	13	42	1.88
50010705--50010777	32	2.2	33	80	11	87	31	21	12	34	1.91
50014343--50014458	33	3.6	32	80	3	117	27	25	12	33	1.93
50014472--50014516	23	2.0	23	91	8	74	22	22	13	42	1.88
50014486--50014558	32	2.2	33	80	11	87	31	21	12	34	1.91
50018622--50018735	40	2.8	40	75	6	104	25	14	28	31	1.94
50020364--50020419	28	2.0	28	96	0	103	17	16	25	41	1.89
50022771--50022828	29	2.0	29	100	0	116	48	6	10	34	1.64
50023060--50023120	25	2.4	25	81	10	79	27	21	22	27	1.99
50023064--50023129	25	2.6	25	75	17	73	27	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50026126--50026241	27	4.3	27	83	6	137	30	11	18	40	1.85
50026143--50026248	54	2.0	54	87	7	153	27	10	19	42	1.84
50026570--50026606	18	2.1	18	94	0	65	21	21	13	43	1.87
50028279--50028322	21	2.1	21	83	8	54	27	11	15	45	1.81
50041371--50041607	39	6.1	39	91	0	375	24	21	30	23	1.99
50041378--50041607	78	2.9	78	96	0	415	24	21	30	23	1.99
50041378--50041637	39	6.6	39	89	0	367	24	21	30	22	1.99
50044874--50044931	26	2.2	26	93	0	98	36	24	5	34	1.78
50049101--50049152	25	2.0	26	85	3	70	25	13	23	38	1.91
50050632--50050714	26	3.2	26	93	3	141	36	25	4	33	1.77
50052538--50052588	21	2.4	21	77	6	59	52	1	1	43	1.23
50054291--50054431	71	2.0	71	92	0	237	38	18	17	26	1.92
50061189--50061235	9	5.4	9	78	17	55	63	2	0	34	1.06
50061203--50061241	15	2.6	14	92	8	60	64	0	0	35	0.94
50076029--50076105	30	2.6	30	82	0	100	22	29	15	32	1.95
50076114--50076219	38	2.7	39	88	2	160	25	22	12	39	1.89
50076604--50076641	19	2.0	20	94	5	69	36	13	23	26	1.91
50077987--50078019	17	1.9	17	88	11	50	9	6	6	78	1.08
50083632--50083704	25	2.9	24	72	22	69	26	20	16	36	1.93
50083632--50083751	50	2.4	50	84	2	152	27	20	18	34	1.95
50090029--50090065	12	3.1	12	100	0	74	16	8	16	59	1.59
50090830--50091093	48	5.6	48	72	15	203	29	20	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50090830--50091097	47	5.7	46	74	10	211	29	20	28	20	1.98
50090782--50091043	44	5.7	44	70	13	136	28	20	29	22	1.98
50093874--50094239	47	7.7	47	92	1	534	32	7	30	29	1.85
50096865--50096953	44	2.0	44	95	0	160	24	16	14	43	1.86
50098362--50098470	49	2.2	50	88	4	159	27	21	16	34	1.94
50103516--50103548	13	2.6	13	90	4	50	48	12	0	39	1.40
50106443--50106531	5	17.6	5	78	17	87	77	0	4	17	0.93
50109579--50109638	31	1.9	31	96	0	111	40	16	8	35	1.79
50111949--50111981	13	2.6	13	90	4	50	48	12	0	39	1.40
50117524--50117578	11	4.9	11	75	18	51	30	1	5	61	1.29
50118048--50118120	37	2.0	37	100	0	146	32	5	16	45	1.70
50119243--50119312	26	2.7	26	86	0	95	25	22	20	31	1.98
50122892--50122985	22	4.2	22	72	6	82	12	22	19	45	1.83
50124556--50124746	39	4.8	40	86	0	145	24	31	21	23	1.98
50124592--50124754	39	4.2	39	89	0	245	23	31	20	23	1.98
50129118--50129152	18	1.9	18	88	0	52	48	22	2	25	1.64
50129226--50129282	25	2.3	25	90	3	89	17	33	17	31	1.93
50129226--50129294	25	2.8	25	82	8	79	15	37	15	30	1.90
50131767--50131959	47	4.0	49	81	9	200	30	29	17	23	1.97
50144467--50144558	26	3.2	26	70	21	85	42	0	5	52	1.24
50144484--50144550	33	2.0	34	82	2	82	41	0	5	52	1.26
50144467--50144587	59	2.0	60	98	1	235	40	0	6	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50149929--50150098	41	4.2	40	76	18	170	28	27	22	21	1.99
50151852--50151884	17	1.9	17	100	0	66	24	21	24	30	1.99
50151948--50152260	48	6.5	48	89	0	457	25	19	27	27	1.99
50155274--50155455	39	4.6	39	89	0	247	23	31	21	23	1.98
50155304--50155456	39	3.9	39	92	0	252	23	32	20	23	1.98
50163330--50163511	39	4.6	39	89	0	247	23	31	21	23	1.98
50163360--50163512	39	3.9	39	92	0	252	23	32	20	23	1.98
50169198--50169312	3	38.7	3	72	14	78	59	2	5	33	1.34
50170145--50170197	21	2.5	22	81	3	63	69	5	5	18	1.28
50175992--50176040	21	2.4	20	82	3	62	22	4	26	46	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433