genome.fa.s6.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  156  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48672590--48672756	40	4.2	40	79	6	169	26	22	26	24	2.00
48680594--48680734	40	3.5	40	83	1	158	27	24	26	21	1.99
48682025--48682200	46	3.8	46	81	10	232	20	21	29	28	1.98
48682021--48682192	93	1.8	93	96	0	317	20	22	30	27	1.98
48686357--48686500	40	3.7	38	79	8	137	24	23	28	23	2.00
48686358--48686545	79	2.4	81	78	5	195	22	23	29	23	1.99
48694226--48694446	124	1.8	121	83	4	291	32	11	23	33	1.90
48694442--48694585	40	3.7	38	79	8	137	24	23	28	23	2.00
48697896--48697940	17	2.5	18	82	10	56	51	8	0	40	1.33
48705033--48705167	26	5.2	26	97	0	245	37	25	4	32	1.76
48710856--48710965	26	4.2	26	92	0	184	36	21	6	35	1.79
48714256--48714318	27	2.3	27	86	5	83	1	4	30	63	1.24
48714578--48714607	2	15.0	2	92	0	51	50	3	0	46	1.18
48718564--48718808	49	4.9	49	79	3	247	30	26	17	25	1.97
48725348--48725517	60	2.9	58	83	6	209	24	14	12	48	1.79
48727628--48727666	18	2.2	18	100	0	78	46	5	23	25	1.73
48733736--48733816	42	1.9	42	92	0	135	30	12	23	33	1.92
48737775--48737996	40	5.6	41	90	4	348	27	26	22	23	2.00
48752167--48752207	17	2.4	17	100	0	82	31	12	12	43	1.79
48755618--48755842	79	2.8	79	84	7	294	25	27	22	25	2.00
48755618--48755841	119	1.9	120	83	8	296	25	27	22	25	2.00
48755599--48755842	40	6.1	40	86	6	284	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48765686--48765753	30	2.3	31	84	7	95	22	26	32	19	1.97
48768842--48768887	19	2.4	19	85	3	56	43	13	2	41	1.55
48777221--48777340	62	1.9	62	85	6	163	27	28	27	16	1.97
48788476--48788599	64	1.9	64	90	3	196	29	16	16	37	1.90
48788715--48789307	177	3.4	175	86	3	814	29	19	21	29	1.98
48793872--48793991	62	1.9	62	83	9	156	27	27	27	17	1.98
48801119--48801161	17	2.5	17	96	0	77	11	13	23	51	1.74
48807181--48807276	40	2.4	41	98	1	185	23	22	26	27	2.00
48808309--48808341	13	2.5	13	100	0	66	6	21	39	33	1.78
48812316--48812355	4	10.0	4	100	0	80	50	25	0	25	1.50
48814176--48814204	6	5.0	6	91	8	51	31	17	17	34	1.93
48821143--48821185	10	4.1	10	80	11	50	53	27	2	16	1.55
48822968--48823066	28	3.5	29	91	8	161	32	27	12	28	1.92
48830693--48830790	28	3.5	29	93	6	159	32	27	12	27	1.92
48832576--48832676	43	2.4	45	79	14	115	33	23	14	27	1.94
48836007--48836175	93	1.8	93	90	2	277	29	29	19	21	1.98
48835999--48836174	46	3.8	46	75	14	173	30	29	19	21	1.97
48836050--48836193	46	3.1	45	71	19	118	31	29	17	22	1.96
48842736--48842780	23	1.9	24	86	4	65	24	2	48	24	1.62
48846254--48846345	42	2.2	42	82	3	114	28	18	22	30	1.97
48846205--48846363	42	3.7	42	74	12	110	27	18	23	30	1.98
48848937--48848997	5	11.6	5	75	20	54	77	1	3	18	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48848937--48848979	6	7.5	6	79	10	54	79	2	2	16	0.95
48848944--48848997	16	3.5	15	80	14	65	75	1	3	18	1.03
48848938--48848993	22	2.6	21	83	8	69	76	1	3	17	1.01
48854164--48854189	12	2.2	12	100	0	52	11	26	38	23	1.89
48858195--48858340	40	3.7	40	84	0	175	24	27	21	26	2.00
48858227--48858378	40	3.8	40	84	5	164	23	25	22	28	1.99
48866219--48866262	14	2.9	15	87	12	56	72	0	2	25	0.96
48870212--48870262	6	8.8	6	80	4	52	76	3	0	19	0.94
48871024--48871063	20	2.0	20	95	0	71	32	40	17	10	1.83
48872018--48872213	48	4.0	48	85	4	268	26	25	20	27	1.99
48872029--48872209	96	1.9	96	92	0	308	25	25	20	27	1.99
48875033--48875078	24	1.9	24	86	0	65	39	19	21	19	1.93
48878009--48878069	32	2.0	31	83	6	79	47	8	3	40	1.49
48878897--48878934	18	2.2	18	86	9	53	68	2	7	21	1.28
48883591--48883636	23	2.0	23	95	0	83	26	26	2	45	1.65
48884886--48884997	42	2.6	41	87	4	152	37	24	13	25	1.91
48887035--48887193	43	3.7	43	75	13	157	30	13	21	33	1.92
48894478--48894506	5	5.8	5	100	0	58	17	0	0	82	0.66
48900223--48900250	2	14.0	2	100	0	56	50	0	0	50	1.00
48900953--48901129	40	4.4	40	80	7	189	25	23	24	25	2.00
48900956--48901105	80	1.9	81	87	4	223	26	22	26	25	2.00
48900955--48901129	80	2.2	81	82	3	219	25	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48900989--48901147	80	2.0	80	80	4	178	28	23	23	23	1.99
48906015--48906058	23	2.0	22	86	4	61	45	9	0	45	1.35
48906186--48906226	21	2.0	21	85	4	57	12	7	9	70	1.33
48909479--48909510	2	16.0	2	100	0	64	50	0	0	50	1.00
48910224--48910409	40	4.7	40	88	5	218	25	21	26	26	1.99
48910277--48910432	80	2.0	79	82	8	192	26	20	26	26	1.99
48916643--48916745	29	3.6	29	92	2	154	26	15	32	26	1.96
48924723--48924825	29	3.6	29	92	2	154	26	15	32	26	1.96
48927473--48927575	29	3.6	29	92	2	154	26	15	32	26	1.96
48935549--48935618	29	2.4	29	97	0	131	25	18	31	24	1.98
48939846--48940031	40	4.7	40	86	5	209	25	21	26	26	2.00
48939875--48940054	80	2.3	80	80	8	190	28	20	25	26	1.99
48943722--48943843	46	2.6	47	84	5	147	26	22	14	36	1.93
48946097--48946164	35	1.9	35	100	0	136	27	4	26	41	1.75
48948151--48948210	30	2.0	30	93	0	102	25	1	15	58	1.46
48948663--48948730	32	2.1	32	88	0	100	42	7	17	32	1.77
48964155--48964303	46	3.2	46	81	7	142	26	18	32	23	1.97
48964232--48964348	47	2.5	45	81	12	114	28	16	28	27	1.97
48966335--48966410	40	1.9	40	83	0	98	17	9	31	42	1.80
48974987--48975026	21	1.9	21	90	10	64	10	42	27	20	1.83
48982957--48983064	25	4.4	24	88	5	137	27	22	22	27	1.99
48990910--48991017	25	4.4	24	87	5	128	27	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48991226--48991286	31	2.0	31	90	0	95	34	16	24	24	1.95
48995745--48995823	32	2.5	32	91	0	122	31	18	10	39	1.84
48995752--48995843	32	2.9	32	86	0	94	31	22	9	35	1.87
48997589--48997740	40	3.8	40	80	5	155	23	23	27	25	2.00
48999134--48999268	56	2.4	56	84	7	168	24	29	18	27	1.98
48999134--48999268	28	4.8	28	73	12	107	24	29	18	27	1.98
49001044--49001086	22	2.0	22	86	4	61	9	41	27	20	1.83
49003359--49003407	17	2.8	18	74	22	50	24	18	22	34	1.96
49004267--49004395	40	3.2	40	81	6	145	23	22	28	25	1.99
49011369--49011417	17	2.8	18	74	22	50	24	18	22	34	1.96
49012237--49012379	40	3.6	39	79	8	119	27	23	27	21	1.99
49012275--49012386	40	2.8	39	84	6	136	23	23	29	24	1.99
49012237--49012401	39	4.2	40	78	6	151	26	22	27	23	1.99
49018893--49019057	56	2.9	56	88	0	231	27	15	23	33	1.94
49020242--49020349	36	2.9	37	88	2	164	27	29	18	24	1.98
49020242--49020349	37	2.9	37	86	5	157	27	29	18	24	1.98
49020490--49020635	48	3.0	48	92	0	238	30	28	6	34	1.83
49027718--49028008	24	12.1	24	96	0	510	36	25	18	20	1.95
49035775--49036064	24	12.1	24	96	0	510	36	25	17	20	1.95
49043406--49043538	24	5.5	24	90	1	196	34	22	16	26	1.95
49045461--49045505	22	2.0	22	100	0	90	20	17	26	35	1.95
49053584--49053645	30	2.1	30	90	0	97	58	11	3	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49058725--49059055	166	2.0	166	95	0	599	22	25	29	22	1.99
49061527--49061557	8	3.9	8	100	0	62	35	25	0	38	1.56
49062628--49062657	10	2.8	11	90	10	53	53	6	0	40	1.27
49066613--49066637	12	2.1	12	100	0	50	60	0	32	8	1.26
49068884--49068980	21	4.6	21	71	0	59	44	19	20	15	1.87
49068889--49069015	42	3.0	42	83	2	121	44	17	22	16	1.87
49078711--49078771	30	2.1	29	96	3	113	24	16	22	36	1.94
49083715--49083851	60	2.3	59	82	8	152	29	20	25	24	1.99
49097561--49097597	16	2.3	16	86	13	58	40	0	0	59	0.97
49097621--49097664	22	2.0	22	86	0	61	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433