genome.fa.s6.2.7.7.80.10.50.1000.344.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  344  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108065210--108065427	33	6.7	32	81	5	177	31	22	10	35	1.88
108065216--108065420	65	3.1	65	77	3	205	31	22	10	35	1.88
108065210--108065427	98	2.2	98	78	1	222	31	22	10	35	1.88
108066095--108066143	21	2.3	22	79	13	57	40	10	0	48	1.37
108066592--108066617	13	2.0	13	100	0	52	38	7	7	46	1.61
108070298--108070338	19	2.2	19	90	0	64	51	2	9	36	1.48
108072320--108072486	39	4.3	39	96	0	307	19	23	29	28	1.98
108096684--108096886	40	5.1	40	84	3	250	24	22	27	26	2.00
108102990--108103081	24	3.9	24	76	19	95	18	4	2	75	1.08
108102981--108103078	48	2.0	50	90	5	157	19	4	3	73	1.13
108102995--108103097	48	2.2	45	78	13	100	19	5	1	72	1.14
108103163--108103246	8	11.0	8	85	8	113	26	0	1	72	0.92
108103827--108103877	15	3.5	15	72	5	50	47	27	1	23	1.63
108104000--108104062	16	4.2	15	70	22	51	14	1	34	49	1.53
108104007--108104074	30	2.3	29	85	10	84	16	1	35	47	1.56
108104124--108104281	41	3.9	41	85	5	187	19	22	21	36	1.95
108104124--108104284	81	2.0	81	85	3	216	19	22	21	36	1.95
108105401--108105519	57	2.1	57	100	0	238	37	17	13	31	1.89
108110481--108110587	43	2.5	43	82	7	128	28	17	27	27	1.98
108110669--108110728	31	1.9	31	93	0	102	53	23	8	15	1.68
108110970--108111017	21	2.3	20	82	10	60	2	43	22	31	1.65
108110981--108111028	21	2.3	21	92	0	78	0	45	22	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108110983--108111038	21	2.7	21	85	0	76	1	44	23	30	1.63
108111445--108111473	14	2.1	14	93	6	51	55	6	0	37	1.27
108116509--108116626	9	13.0	9	76	13	82	38	0	14	45	1.51
108116530--108116640	56	2.0	55	92	1	186	38	0	12	47	1.48
108116904--108117184	99	2.8	99	84	12	367	54	3	7	34	1.45
108116893--108117184	104	2.9	103	87	8	443	55	3	6	34	1.43
108120598--108120660	8	7.5	8	77	10	63	60	9	0	30	1.28
108120604--108120660	9	6.7	9	78	9	66	61	10	0	28	1.29
108120604--108120660	17	3.4	17	92	0	96	61	10	0	28	1.29
108120598--108120652	25	2.2	25	87	6	76	60	9	0	30	1.28
108120856--108120881	2	13.0	2	100	0	52	50	0	0	50	1.00
108121745--108121853	37	2.9	37	95	0	191	26	31	19	22	1.98
108122000--108122186	48	3.8	48	86	7	252	31	26	6	36	1.82
108122156--108122349	47	4.1	47	87	0	271	26	27	11	33	1.92
108122249--108122320	22	3.1	22	67	18	65	23	27	15	33	1.95
108122271--108122350	25	3.3	25	65	16	60	30	26	10	33	1.89
108126223--108126264	21	2.0	21	86	9	59	52	21	4	21	1.65
108126275--108126328	21	2.6	21	87	0	90	53	31	1	12	1.50
108126296--108126361	28	2.4	28	79	5	71	54	25	1	18	1.52
108127040--108127074	17	2.0	17	88	5	52	65	14	0	20	1.26
108127202--108127695	41	12.0	41	78	0	403	20	19	24	35	1.96
108127216--108127370	84	1.8	84	84	2	213	21	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108132273--108132419	75	2.0	75	94	0	258	34	21	15	27	1.94
108135933--108136296	46	7.7	47	75	10	214	28	18	28	25	1.98
108142894--108143021	47	2.8	43	79	11	139	28	19	28	22	1.98
108142897--108143060	46	3.5	45	77	8	161	29	18	29	21	1.97
108142891--108143100	46	4.6	44	75	11	136	28	18	29	24	1.98
108143076--108143406	48	6.8	48	73	6	254	27	16	30	26	1.96
108143227--108143452	49	4.6	49	74	8	199	26	18	28	26	1.98
108143129--108143452	147	2.2	147	89	1	488	27	16	29	26	1.97
108144189--108144549	168	2.1	168	88	2	519	19	24	31	24	1.98
108154874--108154909	5	7.2	5	90	0	54	86	0	13	0	0.58
108158522--108158567	21	2.2	21	88	0	65	4	45	19	30	1.70
108158974--108159002	13	2.1	14	93	6	51	55	6	0	37	1.27
108164063--108164173	9	12.3	9	70	16	61	38	0	15	45	1.46
108164057--108164187	47	2.9	47	89	5	200	40	0	13	45	1.44
108164393--108164474	16	5.4	16	78	14	93	59	10	10	18	1.59
108164389--108164453	28	2.3	29	91	2	105	56	9	15	18	1.65
108167433--108167508	40	1.9	40	86	2	109	25	21	15	38	1.92
108167700--108167750	15	3.3	15	78	8	50	43	0	1	54	1.11
108167812--108167847	2	18.0	2	100	0	72	50	0	0	50	1.00
108168861--108168938	7	11.0	7	75	2	57	20	0	30	48	1.50
108169252--108169814	41	13.8	41	82	6	637	25	16	23	34	1.95
108169252--108169814	81	6.9	81	82	4	661	25	16	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108175834--108175878	23	2.0	23	82	8	56	37	8	13	40	1.76
108184228--108184265	19	2.0	19	94	0	67	28	10	15	44	1.80
108190753--108190802	20	2.7	19	80	20	61	42	2	2	54	1.23
108193923--108194098	46	3.8	46	78	10	196	20	19	30	29	1.97
108193919--108194090	93	1.8	93	91	0	281	20	20	30	28	1.97
108202010--108202073	11	5.9	11	74	18	55	20	0	3	76	0.92
108202033--108202066	7	4.9	7	100	0	68	26	0	0	73	0.83
108203778--108203953	46	3.8	45	78	10	194	21	21	29	28	1.98
108203774--108203946	93	1.9	93	93	0	301	21	21	30	27	1.98
108208647--108208778	66	2.0	66	100	0	264	25	21	15	37	1.92
108247230--108247270	21	2.0	21	85	4	57	34	7	2	56	1.40
108247348--108247387	2	20.0	2	100	0	80	50	0	0	50	1.00
108252393--108252435	16	2.6	17	82	7	54	53	4	0	41	1.21
108252574--108252635	32	1.9	33	83	3	81	40	8	6	45	1.59
108256549--108256639	23	4.0	23	79	0	101	48	23	12	16	1.79
108256550--108256695	46	3.2	46	82	0	157	46	21	13	17	1.83
108256549--108256722	69	2.5	69	82	3	181	46	21	13	18	1.83
108256574--108256722	23	6.5	23	78	3	120	46	19	14	19	1.83
108256573--108256722	46	3.3	46	82	1	167	46	20	14	19	1.83
108264627--108264677	25	2.0	25	84	0	66	25	9	3	60	1.45
108267244--108267268	7	3.6	7	100	0	50	48	36	0	16	1.46
108268136--108268164	7	4.3	7	95	4	51	89	10	0	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108270414--108270449	4	9.0	4	100	0	72	0	75	0	25	0.81
108282372--108282439	29	2.2	33	80	15	83	47	7	4	41	1.51
108286227--108286290	32	2.0	32	96	0	119	25	23	18	32	1.97
108289168--108289287	52	2.3	54	88	4	174	29	20	22	27	1.99
108293020--108293123	52	2.0	52	98	0	199	45	21	7	25	1.78
108299237--108299285	24	2.0	24	100	0	98	46	16	12	24	1.81
108300369--108300439	28	2.5	28	86	4	90	28	26	14	30	1.95
108318412--108318446	16	2.3	15	95	5	61	62	0	0	37	0.95
108323886--108323915	9	3.4	9	95	4	53	33	13	30	23	1.93
108328417--108328453	2	18.5	2	100	0	74	51	0	0	48	1.00
108333657--108333739	41	2.0	41	97	0	157	39	20	16	22	1.92
108334330--108334355	11	2.4	11	100	0	52	46	0	0	53	1.00
108345007--108345126	61	2.0	60	81	1	141	36	5	16	41	1.70
108350179--108350228	8	6.5	8	79	9	50	80	2	16	2	0.91
108350187--108350228	22	1.9	22	85	0	57	78	2	16	2	0.96
108355103--108355150	24	2.0	24	84	8	62	0	0	29	70	0.87
108356055--108356084	2	15.5	2	93	6	53	50	0	0	50	1.00
108356097--108356164	29	2.4	28	83	11	84	50	19	0	30	1.48
108365166--108365411	49	5.0	49	81	5	289	29	26	17	26	1.98
108366987--108367022	18	1.9	19	94	5	65	33	0	0	66	0.92
108366990--108367047	15	3.6	16	80	15	66	27	1	0	70	0.97
108367338--108367366	2	14.5	2	100	0	58	48	51	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108368890--108368960	31	2.3	31	92	0	115	21	19	39	19	1.93
108376270--108376309	19	2.1	19	100	0	80	42	15	10	32	1.79
108379509--108379545	19	1.9	19	100	0	74	37	10	8	43	1.69
108386124--108386150	10	2.7	10	100	0	54	29	0	0	70	0.88
108388805--108388834	2	15.0	2	92	0	51	46	0	3	50	1.18
108391539--108391660	58	2.1	58	84	4	158	26	13	10	50	1.73
108393410--108393461	23	2.2	24	83	10	63	30	0	1	67	1.02
108399445--108399480	18	2.0	18	94	0	63	27	36	5	30	1.80
108412631--108412885	55	4.8	54	77	8	213	37	16	24	22	1.93
108412638--108412840	108	1.9	109	86	6	295	34	17	23	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433