genome.fa.s6.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  178  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55663393--55663431	15	2.8	14	84	7	53	76	0	2	20	0.90
55667146--55667208	27	2.3	26	76	10	63	50	11	0	38	1.38
55667175--55667204	15	2.0	15	93	0	51	40	10	0	50	1.36
55672652--55672696	23	2.0	23	100	0	90	22	24	0	53	1.46
55685454--55685492	18	2.2	18	100	0	78	23	5	15	56	1.59
55693096--55693311	107	2.0	107	98	0	414	39	11	20	28	1.88
55698416--55698553	40	3.5	40	81	2	161	31	13	19	35	1.91
55701898--55701936	17	2.3	17	86	0	51	17	35	2	43	1.63
55704310--55704432	62	2.0	64	95	3	223	37	12	5	44	1.66
55718184--55718323	51	2.7	51	82	4	158	29	27	16	27	1.97
55718184--55718362	51	3.5	50	81	6	155	28	26	17	26	1.98
55723470--55723534	3	21.7	3	96	0	121	32	0	1	66	1.01
55725173--55725235	6	10.7	6	79	3	74	14	3	4	77	1.05
55726540--55726774	39	6.0	39	89	2	319	28	20	29	22	1.98
55726542--55726782	117	2.1	118	88	2	351	26	19	30	23	1.98
55733632--55733866	39	6.0	39	89	2	319	28	20	29	22	1.98
55733651--55733910	39	6.6	40	87	1	152	25	21	30	22	1.99
55739140--55739175	19	1.9	18	88	5	54	8	8	13	69	1.36
55740544--55740579	2	18.0	2	100	0	72	50	0	0	50	1.00
55753068--55753722	45	14.7	45	65	9	187	27	19	24	28	1.98
55753066--55753677	133	4.6	133	91	0	956	27	19	24	28	1.99
55754100--55754129	12	2.5	12	100	0	60	50	36	0	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55754482--55754517	19	1.9	18	88	5	54	8	8	13	69	1.36
55754480--55754537	18	3.2	18	80	2	53	10	5	8	75	1.17
55755684--55755740	28	2.0	29	82	3	71	38	3	1	56	1.27
55758091--55758118	13	2.2	13	100	0	56	28	14	14	42	1.84
55762340--55762393	4	14.2	4	80	18	62	50	0	0	50	1.00
55766183--55766342	79	2.0	79	100	0	320	20	27	16	35	1.94
55770850--55770874	2	12.5	2	100	0	50	48	0	0	52	1.00
55773191--55773215	7	3.6	7	100	0	50	72	0	0	28	0.86
55773551--55773593	23	1.9	23	85	4	61	60	9	11	18	1.57
55778379--55778441	31	2.0	31	96	0	117	42	23	15	17	1.88
55780008--55780152	42	3.4	43	75	12	120	24	18	24	32	1.97
55787735--55787837	42	2.4	44	77	9	106	29	18	23	29	1.98
55791412--55791573	83	2.0	83	92	0	270	41	22	19	16	1.90
55793880--55793982	29	3.6	28	81	5	116	21	16	33	29	1.95
55801675--55801777	29	3.6	28	81	5	116	21	16	33	29	1.95
55803654--55803705	25	2.1	25	100	0	104	26	15	11	46	1.80
55808175--55808345	93	1.8	93	93	2	299	28	28	21	22	1.99
55808168--55808342	46	3.8	46	77	14	198	29	27	20	22	1.98
55813680--55813853	46	3.8	46	78	13	205	28	28	20	21	1.98
55813688--55813857	93	1.8	92	94	1	304	28	28	21	21	1.99
55824680--55825209	284	1.9	284	93	0	925	36	17	13	32	1.89
55830431--55830615	79	2.3	82	83	7	229	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55830432--55830623	40	4.8	40	79	7	151	24	24	28	22	2.00
55830431--55830648	79	2.7	79	79	6	183	24	23	27	24	2.00
55838479--55838663	79	2.3	82	83	7	229	24	24	27	23	2.00
55838480--55838671	40	4.8	40	79	7	151	24	24	28	22	2.00
55838479--55838696	79	2.7	79	79	6	183	24	23	27	24	2.00
55849020--55849202	40	4.6	39	76	10	122	24	24	27	23	2.00
55849073--55849202	40	3.3	40	82	5	140	25	25	26	22	2.00
55849020--55849171	79	1.9	80	84	6	202	25	23	28	23	2.00
55854934--55855000	31	2.1	33	83	13	86	22	28	34	14	1.94
55855347--55855391	23	2.0	23	91	8	74	15	4	53	26	1.61
55866910--55867024	27	4.3	26	87	5	149	36	23	23	16	1.94
55866910--55867024	54	2.1	54	88	3	169	36	23	23	16	1.94
55868642--55868751	26	4.2	26	95	2	177	36	24	4	34	1.76
55871171--55871243	31	2.3	32	80	2	85	42	0	4	53	1.20
55871580--55871612	11	3.0	11	87	12	50	75	0	24	0	0.80
55871934--55871978	23	1.9	24	86	13	67	55	2	20	22	1.54
55872413--55872460	25	1.9	25	82	0	60	39	0	27	33	1.57
55876147--55876216	27	2.5	28	97	2	133	28	12	27	31	1.93
55885982--55886049	30	2.3	30	82	5	75	27	20	5	45	1.74
55886384--55886487	9	11.6	9	80	4	93	28	7	18	45	1.77
55890908--55890950	5	8.6	5	85	14	54	83	2	13	0	0.74
55894141--55894181	20	2.0	20	100	0	82	4	29	9	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55894595--55894672	26	2.9	25	78	16	68	57	1	2	38	1.20
55897078--55897118	21	1.9	22	85	5	57	31	24	4	39	1.76
55901165--55901249	27	3.1	27	83	11	102	37	7	24	30	1.82
55901164--55901259	28	3.4	27	84	5	113	38	9	23	28	1.86
55909479--55909508	15	1.9	16	93	6	53	60	0	10	30	1.30
55912291--55912977	48	14.4	48	94	2	1118	34	6	28	30	1.83
55913118--55913220	37	2.8	37	93	0	179	23	19	32	25	1.98
55914503--55914935	40	10.8	40	91	1	645	21	20	29	28	1.98
55919351--55919501	40	3.8	39	82	2	142	23	27	22	25	2.00
55919351--55919501	80	1.9	79	83	6	198	23	27	22	25	2.00
55933163--55933294	29	4.6	29	82	1	140	25	32	17	25	1.97
55936355--55936508	84	1.8	84	94	0	272	24	16	27	31	1.96
55937410--55937539	40	3.3	39	83	4	163	23	25	28	23	1.99
55944617--55944728	40	2.8	41	86	9	144	24	26	28	20	1.99
55952861--55952930	25	2.8	25	93	0	122	22	21	28	27	1.99
55965336--55965362	13	2.1	13	100	0	54	14	33	37	14	1.88
55966707--55966783	39	2.0	38	84	2	100	31	28	12	27	1.93
55971989--55972558	189	3.0	189	99	0	1122	32	16	22	27	1.96
55976648--55976708	19	3.2	18	79	9	68	16	34	29	19	1.94
55977127--55977152	13	2.0	13	100	0	52	15	7	30	46	1.74
55978003--55978061	30	2.0	30	93	0	100	20	25	23	30	1.98
55978083--55978154	37	1.9	37	88	0	108	26	13	30	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55980270--55980445	40	4.4	40	83	6	225	25	27	22	23	2.00
55988253--55988429	40	4.4	40	85	4	234	25	27	22	23	2.00
55995818--55995870	16	3.3	16	78	7	63	56	0	0	43	0.99
56019382--56019422	16	2.6	16	88	0	64	46	0	0	53	1.00
56032910--56032947	18	2.1	18	95	0	67	31	15	18	34	1.92
56043570--56043626	28	2.0	28	100	0	114	38	14	12	35	1.83
56046466--56046534	34	2.0	34	97	0	129	39	4	5	50	1.46
56047965--56048058	35	2.6	36	80	6	111	30	10	17	41	1.83
56050365--56050500	67	2.0	67	84	0	173	22	16	19	41	1.89
56053698--56053743	19	2.5	20	86	10	62	58	0	32	8	1.28
56053699--56053743	9	4.9	9	82	12	56	57	0	33	8	1.30
56057024--56057155	67	2.0	67	90	0	210	24	18	18	37	1.94
56059199--56059229	14	2.2	14	100	0	62	32	0	12	54	1.38
56061300--56061331	10	3.2	10	100	0	64	28	0	0	71	0.86
56061294--56061331	20	2.0	19	90	10	60	31	0	0	68	0.90
56065927--56066051	55	2.3	55	79	8	130	25	27	29	17	1.98
56070069--56070171	29	3.6	27	81	5	98	29	33	16	21	1.95
56077879--56077981	29	3.6	27	81	5	98	29	33	16	21	1.95
56080577--56080800	40	5.6	40	91	1	335	24	24	27	24	2.00
56087374--56087555	39	4.6	39	86	2	231	24	21	30	23	1.99
56091469--56093205	437	4.0	437	99	0	3393	28	22	18	30	1.97
56094137--56094342	40	5.2	40	83	3	227	24	25	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56097756--56097887	29	4.6	29	83	1	149	25	32	16	25	1.96
56105183--56105390	40	5.2	39	85	1	227	25	25	22	26	2.00
56105183--56105390	80	2.6	80	84	1	256	25	25	22	26	2.00
56107400--56107605	40	5.2	40	82	3	218	24	25	23	26	2.00
56107400--56107607	80	2.6	80	83	3	240	24	25	23	26	2.00
56109715--56109754	21	2.0	21	95	5	73	20	30	40	10	1.85
56113106--56113207	51	2.0	51	92	0	168	17	10	30	41	1.84
56119003--56119033	14	2.2	14	94	0	53	29	0	45	25	1.54
56120352--56120378	3	9.0	3	100	0	54	33	0	0	66	0.92
56124510--56124568	27	2.2	27	84	0	73	45	18	6	28	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433