genome.fa.s6.2.7.7.80.10.50.1000.335.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  335  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104842894--104843099	42	4.9	42	83	4	245	30	15	25	28	1.96
104848808--104848913	35	3.0	35	98	0	203	37	15	11	35	1.83
104853224--104853353	40	3.2	40	82	4	165	23	24	28	23	2.00
104864883--104864936	27	2.0	27	85	7	74	27	20	18	33	1.96
104871227--104871260	17	1.9	18	88	5	52	38	5	5	50	1.51
104871435--104871485	23	2.1	24	85	10	68	47	0	3	49	1.20
104871441--104871482	16	2.7	15	85	7	57	50	0	2	47	1.14
104873375--104873430	28	2.0	28	100	0	112	35	14	14	35	1.86
104885030--104885284	42	6.0	42	78	2	260	29	14	25	29	1.95
104887871--104887941	30	2.4	29	81	9	81	22	7	8	61	1.48
104899359--104899522	71	2.3	71	100	0	328	18	28	17	35	1.94
104899359--104899556	71	2.8	70	91	3	258	20	28	17	33	1.95
104906927--104907090	71	2.3	71	100	0	328	18	28	17	35	1.94
104906927--104907124	71	2.8	70	91	3	258	20	28	17	33	1.95
104909939--104911003	205	5.1	204	87	2	1251	30	19	22	28	1.97
104909806--104911003	410	2.9	413	84	5	1308	30	18	22	28	1.97
104912655--104912696	21	2.0	21	86	9	59	33	4	2	59	1.31
104913376--104913448	30	2.4	31	82	13	89	23	8	6	61	1.48
104915394--104915461	26	2.7	23	71	22	57	45	2	2	48	1.32
104920653--104920697	21	2.1	21	84	8	56	71	2	15	11	1.24
104920928--104920952	7	3.6	7	100	0	50	12	0	28	60	1.32
104921826--104921895	27	2.5	28	90	2	115	25	12	28	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104928717--104928741	7	3.6	7	100	0	50	12	0	28	60	1.32
104929619--104929688	27	2.5	28	90	2	115	25	12	28	32	1.93
104935611--104935742	29	4.6	29	84	1	149	25	16	32	25	1.96
104942917--104943048	29	4.6	29	84	1	149	25	16	32	25	1.96
104950413--104950607	50	3.9	49	80	2	228	29	25	18	26	1.98
104950419--104950607	100	1.9	101	87	1	281	29	24	19	25	1.98
104950929--104950995	35	1.9	35	93	0	116	50	13	1	34	1.51
104950941--104950998	19	3.2	19	68	22	61	51	10	1	36	1.46
104953290--104953328	15	2.5	15	91	4	60	56	15	12	15	1.68
104956040--104956274	49	4.7	48	76	7	209	28	25	18	26	1.98
104956054--104956285	100	2.3	98	81	4	259	29	26	18	25	1.98
104956619--104956676	19	3.2	19	68	22	61	51	10	1	36	1.46
104958595--104958665	34	2.1	33	87	7	99	26	25	23	23	2.00
104961385--104961582	71	2.8	70	89	5	276	32	18	28	20	1.96
104961419--104961582	71	2.3	71	97	0	310	34	18	28	18	1.95
104968423--104968616	67	2.8	69	87	8	247	33	18	27	20	1.96
104968457--104968616	67	2.3	69	94	4	279	35	18	26	19	1.95
104973673--104973839	40	4.2	40	81	2	176	24	27	22	25	2.00
104973689--104973839	80	1.9	79	83	6	198	23	27	22	25	2.00
104975030--104975138	56	2.0	53	82	12	132	28	16	18	36	1.92
104981678--104981844	40	4.2	40	81	2	176	24	27	22	25	2.00
104981694--104981844	80	1.9	79	83	6	198	23	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104989223--104989299	40	1.9	40	91	0	127	20	23	19	36	1.95
104990473--104990832	132	2.7	129	80	6	357	36	17	18	26	1.93
104990535--104990859	132	2.5	132	85	2	402	34	18	18	28	1.94
104998152--104998281	40	3.2	40	82	4	165	23	24	28	23	2.00
105005344--105005413	27	2.5	28	88	2	106	28	14	25	31	1.95
105005344--105005425	27	3.0	27	80	8	103	29	13	23	34	1.93
105013461--105013622	40	4.2	39	76	7	145	26	20	27	24	1.99
105021492--105021620	40	3.2	40	81	6	145	23	22	28	25	1.99
105027850--105028239	132	3.0	130	80	6	421	27	18	18	34	1.95
105030104--105030171	15	4.5	15	87	3	93	11	14	17	55	1.68
105039667--105039836	43	4.0	42	77	10	175	22	16	28	32	1.96
105043399--105043424	11	2.4	11	100	0	52	30	0	26	42	1.56
105045317--105045591	40	6.9	40	91	2	430	22	21	28	28	1.99
105045316--105045561	119	2.1	120	93	0	431	22	21	28	28	1.99
105045597--105045785	57	3.3	57	84	2	220	23	19	28	28	1.98
105045658--105045757	28	3.6	27	84	8	137	22	17	29	32	1.96
105055900--105055927	13	2.2	13	100	0	56	50	21	0	28	1.49
105056776--105056888	29	4.0	29	82	6	124	30	29	13	27	1.94
105059284--105059587	42	7.3	42	83	3	380	22	18	22	36	1.95
105060328--105060908	148	3.9	149	83	8	639	43	5	8	42	1.58
105063923--105064098	46	3.8	46	79	12	216	20	21	29	28	1.98
105063920--105064091	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105072883--105072952	27	2.5	28	88	2	106	28	14	25	31	1.95
105072883--105072964	27	3.0	27	80	8	103	29	13	23	34	1.93
105080949--105081018	27	2.5	28	88	2	106	28	14	25	31	1.95
105080949--105081030	27	3.0	27	80	8	103	29	13	23	34	1.93
105085090--105085219	40	3.2	40	82	4	165	23	24	28	23	2.00
105093759--105093908	40	3.8	40	76	11	139	26	24	26	22	2.00
105093802--105093908	39	2.7	38	85	9	135	23	26	28	21	1.99
105093754--105093940	40	4.8	38	73	11	137	27	23	26	22	2.00
105098664--105098829	43	3.9	43	74	5	158	28	16	24	31	1.96
105106744--105106781	19	2.0	20	85	15	53	36	0	23	39	1.55
105113399--105113571	46	3.7	46	79	10	208	21	20	27	29	1.98
105113396--105113566	93	1.8	93	93	0	297	21	21	28	28	1.98
105116022--105116203	67	2.8	64	78	8	190	29	15	30	24	1.95
105128040--105128105	34	1.9	34	96	0	123	36	19	16	27	1.93
105134139--105134430	27	10.9	27	82	5	299	41	21	8	28	1.82
105134433--105134566	27	5.0	27	85	5	173	33	19	23	23	1.97
105135080--105135135	22	2.5	22	83	11	87	19	23	21	35	1.96
105135221--105135302	27	3.1	26	82	6	76	20	23	18	37	1.94
105135236--105135302	27	2.5	27	85	4	82	22	25	16	35	1.94
105135430--105135550	25	4.6	25	77	11	107	21	19	12	46	1.83
105135480--105135598	6	19.3	6	71	14	82	19	20	12	47	1.81
105135427--105135556	56	2.3	56	91	0	206	21	19	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105135427--105135586	31	5.4	31	73	14	122	21	20	11	46	1.82
105135511--105135598	37	2.4	37	92	0	140	19	20	11	48	1.79
105144468--105144509	21	2.0	21	85	0	57	66	0	2	30	1.04
105153260--105153291	16	2.0	16	100	0	64	31	6	12	50	1.65
105156790--105156841	24	2.1	25	82	3	61	30	5	19	44	1.74
105157441--105157572	45	3.0	43	74	10	126	23	16	27	32	1.96
105166333--105166385	20	2.7	20	76	2	54	71	3	3	20	1.17
105168174--105168243	27	2.5	28	95	2	124	28	12	28	30	1.93
105168174--105168255	27	3.0	27	87	5	76	29	14	25	30	1.95
105170305--105170348	23	1.9	23	95	0	79	52	11	0	36	1.38
105174316--105174409	25	3.8	25	81	5	118	28	24	21	25	1.99
105179684--105179767	29	2.9	29	92	0	141	27	30	14	27	1.95
105187737--105187839	29	3.6	29	87	0	143	25	33	15	26	1.95
105189260--105189303	22	2.0	23	95	4	81	22	31	15	29	1.95
105190827--105190900	29	2.6	29	95	0	139	27	14	31	27	1.95
105190884--105190961	29	2.6	30	79	4	86	24	20	33	21	1.97
105193785--105194017	27	8.7	27	82	6	244	26	13	19	40	1.89
105200934--105201183	27	9.3	27	85	0	275	42	21	13	23	1.88
105200945--105201186	81	3.0	81	85	0	313	42	21	13	23	1.87
105204730--105204756	12	2.2	12	100	0	54	29	33	22	14	1.94
105205803--105205982	92	2.0	92	96	0	333	37	21	7	33	1.81
105208046--105208191	68	2.1	68	100	0	292	23	30	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105208046--105208217	68	2.5	67	92	5	249	23	28	13	33	1.93
105213271--105213538	49	5.1	49	72	20	229	33	7	27	30	1.84
105213345--105213381	18	2.1	18	100	0	74	37	0	35	27	1.57
105213271--105213481	116	1.8	114	96	2	395	33	7	28	30	1.84
105213296--105213430	67	2.0	67	100	0	270	34	5	30	29	1.81
105213363--105213538	49	3.6	49	94	1	318	34	6	27	31	1.83
105213607--105213693	37	2.3	36	92	5	138	20	18	33	27	1.96
105219276--105219427	68	2.2	68	97	0	286	23	29	15	31	1.95
105219276--105219453	68	2.6	66	88	8	241	23	28	15	33	1.94
105221179--105221305	40	3.2	39	76	8	121	22	29	24	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433