genome.fa.s6.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  149  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46265235--46265365	40	3.3	40	79	2	156	25	23	27	23	2.00
46266982--46267063	27	3.1	27	96	1	148	19	23	23	34	1.97
46266982--46267091	27	4.1	27	90	3	143	20	22	20	36	1.95
46267377--46267472	27	3.6	25	80	12	77	17	22	21	37	1.94
46267402--46267470	27	2.6	27	86	4	86	18	24	20	36	1.95
46267618--46267779	6	26.8	6	75	15	147	20	15	14	50	1.78
46267593--46267779	85	2.2	85	95	0	329	20	15	14	49	1.79
46267593--46267800	30	7.1	30	79	11	198	20	15	14	49	1.79
46269871--46269976	39	2.7	39	89	0	167	26	21	25	26	2.00
46276610--46276736	60	2.1	60	89	2	193	54	13	8	23	1.66
46280507--46280548	16	2.6	16	88	0	57	26	0	4	69	1.08
46285635--46285675	20	2.0	20	100	0	82	24	19	19	36	1.95
46288769--46288876	26	4.2	26	93	0	189	32	7	24	36	1.83
46295855--46295962	26	4.2	26	93	0	189	32	7	24	36	1.83
46307394--46307428	14	2.6	13	82	8	52	68	11	5	14	1.37
46316185--46316216	16	2.0	16	93	0	55	46	6	15	31	1.71
46317506--46317548	19	2.3	19	83	0	50	18	9	23	48	1.76
46319576--46319745	45	3.7	47	77	17	169	27	29	21	21	1.99
46319576--46319745	93	1.8	93	94	1	306	27	29	21	21	1.99
46327155--46327405	126	2.0	126	96	0	466	34	15	24	25	1.94
46327755--46328060	48	6.4	48	77	2	238	24	29	21	24	1.99
46327755--46328070	96	3.3	95	82	3	350	24	29	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46329483--46329693	40	5.3	40	91	2	329	26	23	27	22	2.00
46337801--46337870	27	2.5	28	93	2	115	27	14	28	30	1.95
46337801--46337882	27	3.0	27	84	8	69	28	15	25	30	1.96
46345736--46345805	27	2.5	28	93	2	115	27	14	28	30	1.95
46345736--46345817	27	3.0	27	84	8	69	28	15	25	30	1.96
46348557--46348708	40	3.8	40	89	5	202	23	24	28	23	2.00
46353775--46353834	28	2.1	28	87	0	84	33	5	28	33	1.79
46356889--46357134	49	4.9	50	78	2	253	26	17	26	29	1.98
46358517--46358571	27	2.0	27	100	0	110	50	18	3	27	1.63
46363920--46364048	49	2.7	47	82	5	159	24	24	20	29	1.99
46364977--46365091	64	1.9	58	89	10	162	44	14	16	24	1.85
46368492--46368552	32	1.9	32	89	0	95	32	34	9	22	1.87
46370548--46370588	21	2.0	20	85	4	55	26	24	36	12	1.91
46373191--46373230	21	1.9	21	85	10	55	47	22	5	25	1.71
46376975--46377158	40	4.6	40	82	4	174	28	22	26	23	1.99
46379311--46379470	51	3.2	51	94	1	286	39	25	4	30	1.75
46381294--46381360	33	2.0	33	94	0	116	47	13	1	37	1.52
46382396--46382601	54	3.8	53	79	3	180	20	24	17	37	1.94
46389547--46389792	40	6.2	40	87	3	307	26	23	27	22	1.99
46395123--46395260	53	2.5	55	77	4	147	21	21	17	39	1.93
46398139--46398237	45	2.2	45	85	3	128	37	19	22	21	1.94
46398215--46398239	12	2.1	12	100	0	50	40	20	24	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46399499--46399561	33	1.9	33	87	9	94	53	6	0	39	1.26
46399842--46399883	20	2.2	19	87	12	59	57	4	0	38	1.20
46404243--46404286	19	2.4	19	85	7	56	50	0	9	40	1.34
46406833--46407250	27	15.5	27	88	1	559	37	19	20	23	1.94
46407513--46407564	27	2.0	26	84	3	68	17	26	21	34	1.95
46407683--46407813	6	21.3	6	73	16	108	19	16	14	48	1.80
46407693--46407750	19	3.4	19	67	30	58	18	15	17	48	1.82
46407683--46407793	31	3.6	31	92	0	159	19	17	14	48	1.81
46409745--46410160	27	15.5	27	88	1	557	37	19	19	23	1.94
46409742--46410178	107	4.1	108	88	1	644	37	18	20	24	1.94
46409742--46410164	134	3.1	135	88	2	609	36	18	19	24	1.94
46409745--46410164	188	2.2	188	93	1	709	36	19	20	24	1.95
46410423--46410474	27	2.0	26	84	3	68	17	26	21	34	1.95
46410593--46410735	6	23.3	6	74	14	123	18	16	16	48	1.82
46410593--46410724	31	4.3	31	88	2	169	18	16	15	48	1.81
46412001--46412057	26	2.2	26	83	3	69	38	19	17	24	1.93
46414962--46415067	45	2.4	45	87	3	151	39	17	20	21	1.92
46415045--46415074	12	2.5	12	94	0	51	43	16	23	16	1.87
46416137--46416197	22	2.9	20	79	11	68	18	4	3	73	1.14
46416340--46416402	33	1.9	33	87	9	94	53	6	0	39	1.26
46416682--46416736	19	2.8	19	82	15	60	56	3	0	40	1.17
46416710--46416744	9	3.8	9	88	7	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46418073--46418132	30	2.0	30	93	0	102	38	6	25	30	1.81
46418554--46418726	46	3.8	45	80	13	208	21	20	28	29	1.98
46418551--46418721	93	1.8	93	94	0	306	21	21	29	28	1.98
46433347--46433399	6	8.7	6	82	2	61	28	20	18	32	1.97
46440309--46440343	18	1.9	18	94	0	61	34	20	14	31	1.92
46443601--46443756	43	3.6	43	77	8	131	28	12	24	33	1.92
46447527--46447696	43	4.0	43	78	9	159	26	14	25	34	1.94
46452877--46452952	21	3.5	21	65	16	55	39	25	13	22	1.90
46452861--46452948	45	2.0	45	95	0	158	39	25	12	22	1.89
46453903--46454132	27	8.5	27	85	3	302	28	22	8	40	1.83
46453900--46454132	54	4.3	54	92	0	376	28	22	9	39	1.84
46453883--46454142	81	3.2	81	81	3	308	30	23	8	38	1.84
46454126--46454279	27	5.7	27	81	0	191	39	21	7	31	1.80
46454119--46454279	81	2.0	81	85	2	216	39	21	7	32	1.81
46454126--46454276	54	2.8	54	91	0	248	40	21	6	31	1.79
46454914--46454982	28	2.5	28	92	2	113	44	26	10	18	1.81
46462955--46462995	20	2.0	20	86	9	57	17	7	2	73	1.17
46472473--46472497	13	1.9	13	100	0	50	16	48	28	8	1.74
46478083--46478130	25	1.9	25	100	0	96	12	8	25	54	1.65
46483365--46483487	48	2.6	48	86	2	158	27	27	17	27	1.97
46491494--46491580	44	2.0	44	84	4	113	35	13	27	22	1.92
46493210--46493331	47	2.6	47	94	0	208	36	13	23	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46493318--46493507	53	3.5	53	85	5	274	33	18	25	22	1.97
46493889--46493933	12	3.8	12	80	14	58	75	2	15	6	1.11
46493897--46493943	22	2.1	23	92	4	78	72	4	19	4	1.18
46496670--46497382	49	14.5	49	96	0	1282	33	9	26	30	1.88
46497431--46497517	37	2.3	36	94	5	147	20	19	33	26	1.97
46499928--46499993	21	3.0	22	78	8	89	15	16	25	42	1.87
46501095--46501222	53	2.4	53	82	5	150	32	18	26	21	1.97
46501324--46501357	16	2.1	16	88	5	50	41	5	17	35	1.74
46508340--46508446	42	2.5	42	95	0	187	28	14	33	23	1.93
46508447--46508523	27	2.8	28	86	2	102	28	14	23	33	1.94
46511558--46511724	40	4.2	40	78	6	160	25	22	27	24	2.00
46519560--46519726	40	4.2	40	78	6	160	25	22	27	24	2.00
46525534--46525610	38	2.0	38	87	0	109	18	24	25	31	1.97
46527037--46527081	22	2.0	22	100	0	90	28	22	17	31	1.97
46529275--46529313	19	2.1	19	95	0	69	15	10	5	69	1.34
46539117--46539177	30	2.0	30	100	0	122	32	19	16	31	1.94
46543808--46543966	59	2.7	59	86	4	225	31	8	20	39	1.82
46544061--46544119	3	19.7	3	96	0	109	0	1	32	66	1.02
46544118--46544155	3	12.7	3	100	0	76	31	0	0	68	0.90
46546423--46546912	245	2.0	245	92	2	824	46	5	30	16	1.70
46550603--46550790	65	2.9	65	81	6	215	21	20	22	35	1.96
46550829--46550894	26	2.5	27	82	4	73	22	18	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46550938--46550998	26	2.3	25	86	8	77	18	18	19	44	1.87
46561509--46561557	19	2.5	19	83	3	53	53	0	6	40	1.26
46568780--46568843	31	2.1	31	90	0	101	25	23	14	37	1.92
46569037--46569176	23	6.0	23	95	1	226	31	20	21	26	1.98
46569227--46569291	20	3.2	20	88	0	103	30	23	12	33	1.91
46571698--46571741	19	2.4	18	85	7	54	40	9	0	50	1.34
46573195--46573240	22	2.1	22	95	0	83	28	17	21	32	1.96
46585207--46585437	47	4.9	47	75	12	181	23	29	18	28	1.98
46585206--46585477	94	2.9	94	73	16	260	23	28	19	28	1.98
46585207--46585477	47	5.8	45	75	12	167	23	28	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433