genome.fa.s6.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  153  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47737203--47737446	50	4.9	50	77	6	251	25	16	27	30	1.97
47737204--47737385	101	1.8	101	89	2	285	25	15	26	31	1.96
47737204--47737432	101	2.3	100	84	3	282	25	16	27	31	1.96
47737646--47737677	16	2.0	16	93	0	55	46	0	18	34	1.49
47740525--47740683	44	3.6	44	85	5	216	25	15	27	31	1.96
47741151--47741203	23	2.3	23	74	6	54	16	3	28	50	1.62
47749517--47749738	79	2.8	79	81	9	263	25	21	27	26	1.99
47749517--47749724	40	5.2	40	84	7	262	24	21	27	25	1.99
47757703--47757894	40	4.8	40	82	8	214	25	19	28	26	1.99
47757757--47757920	79	2.1	79	84	5	208	25	20	28	26	1.99
47761392--47761433	22	2.1	19	86	13	57	52	0	2	45	1.13
47761489--47761547	30	2.0	30	83	6	75	44	11	11	32	1.78
47770027--47770430	27	15.1	27	77	8	209	35	23	8	32	1.84
47770051--47770218	81	2.1	81	88	4	250	30	25	5	38	1.80
47770222--47770393	53	3.2	52	75	8	143	38	21	9	29	1.86
47770227--47770399	80	2.2	80	82	6	199	40	21	9	28	1.84
47770415--47771032	27	23.3	27	86	3	808	33	20	20	25	1.97
47770669--47770707	18	2.1	19	95	4	71	28	20	23	28	1.99
47771680--47771781	27	3.8	27	87	5	134	18	23	21	36	1.95
47771938--47772088	6	25.0	6	76	14	141	20	18	13	47	1.83
47773217--47773241	2	12.5	2	100	0	50	52	0	0	48	1.00
47773785--47773827	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47787879--47787939	23	2.7	21	72	18	52	63	4	8	22	1.41
47790993--47791173	40	4.5	40	80	7	197	24	25	23	25	2.00
47790993--47791171	80	2.2	81	86	3	245	24	26	24	25	2.00
47797993--47798051	23	2.6	22	84	10	75	20	20	20	38	1.93
47797951--47798059	22	4.7	23	74	10	80	22	22	16	38	1.93
47808530--47808887	161	2.2	161	93	1	628	27	22	8	41	1.83
47808530--47808885	27	13.2	27	83	0	426	27	21	8	41	1.83
47808785--47808976	27	7.1	27	79	2	80	34	23	7	33	1.84
47808530--47808886	54	6.6	54	91	0	554	27	22	8	41	1.83
47808604--47808922	81	4.0	81	77	4	185	29	22	8	39	1.83
47808880--47809033	27	5.7	27	83	0	209	39	20	7	31	1.81
47808873--47809033	81	2.0	81	87	0	232	39	20	8	32	1.82
47808880--47809030	54	2.8	54	92	0	248	40	21	7	31	1.80
47809667--47809735	28	2.5	28	95	2	122	43	27	10	18	1.82
47812521--47812815	54	5.5	54	92	0	484	27	23	8	41	1.83
47812521--47812814	27	10.9	27	83	0	365	27	22	8	41	1.83
47812809--47812962	27	5.7	27	83	0	209	39	20	7	31	1.81
47812802--47812962	81	2.0	81	87	0	232	39	20	7	32	1.81
47812809--47812959	54	2.8	54	92	0	248	40	21	7	31	1.80
47813595--47813663	28	2.5	28	95	2	122	43	27	10	18	1.82
47819716--47819768	22	2.4	22	83	3	61	9	30	33	26	1.88
47822369--47822404	19	1.9	18	88	5	54	19	25	36	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47824213--47824261	19	2.5	19	80	9	55	34	14	12	38	1.83
47828458--47828742	47	6.1	47	95	0	480	27	28	10	33	1.90
47832559--47832652	11	8.6	11	76	19	58	4	15	3	76	1.07
47832588--47832660	4	19.8	4	73	16	68	2	19	2	75	1.05
47832558--47832662	33	3.3	32	82	10	119	3	17	2	76	1.06
47832576--47832660	11	7.8	11	79	10	77	2	16	3	77	1.01
47832587--47832656	26	2.6	26	95	4	122	2	18	2	75	1.05
47834005--47834047	2	21.5	2	100	0	86	51	0	0	48	1.00
47837076--47837251	46	3.8	46	75	10	178	20	21	28	29	1.98
47844133--47844202	27	2.6	27	95	2	122	30	27	14	28	1.95
47851918--47851987	27	2.6	27	95	2	122	30	27	14	28	1.95
47859686--47859772	45	1.9	45	92	0	147	34	27	14	22	1.94
47860695--47860733	21	1.9	20	85	15	53	5	20	0	74	1.01
47863487--47863537	10	4.7	11	82	7	61	43	1	1	52	1.23
47863504--47863541	10	3.9	10	96	3	69	50	0	0	50	1.00
47863504--47863557	20	2.8	19	83	16	67	44	0	1	53	1.11
47867172--47867232	30	2.0	30	83	0	77	31	22	8	37	1.84
47891954--47892010	30	1.9	30	88	0	87	36	15	21	26	1.93
47892347--47892514	46	3.6	46	74	9	160	27	20	26	25	1.99
47894158--47894184	13	2.1	13	100	0	54	14	33	37	14	1.88
47897886--47897963	39	2.0	39	92	0	129	32	23	16	28	1.96
47898766--47898816	24	2.1	24	100	0	102	27	27	7	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47903873--47904094	40	5.6	40	93	1	367	27	26	22	22	2.00
47919745--47919789	22	2.0	22	87	8	65	35	0	0	64	0.94
47923940--47924224	142	2.0	143	98	1	556	44	8	4	41	1.56
47924442--47924479	18	2.2	18	86	9	53	76	2	10	10	1.12
47930481--47930625	40	3.6	40	88	4	213	26	26	22	24	2.00
47933398--47933601	101	2.0	101	94	0	354	34	22	12	31	1.91
47934063--47934109	24	2.0	24	83	8	60	40	6	14	38	1.72
47940917--47940951	18	1.9	18	94	0	61	42	11	14	31	1.81
47941318--47941365	12	3.9	12	86	2	60	22	16	0	60	1.36
47949738--47949985	49	5.1	49	97	0	451	34	12	25	27	1.92
47949738--47950070	98	3.5	98	85	9	487	34	11	26	28	1.91
47949949--47950016	35	1.9	35	96	0	127	35	8	26	29	1.87
47949900--47950065	84	2.0	84	93	0	287	33	10	27	28	1.90
47949985--47950090	49	2.1	49	87	3	149	33	9	28	28	1.88
47950139--47950225	37	2.3	36	94	5	147	20	19	33	26	1.97
47955080--47955123	23	2.0	22	82	8	54	15	20	18	45	1.85
47963065--47963228	27	6.1	26	76	8	123	25	21	16	35	1.94
47963071--47963227	81	2.0	80	83	3	199	25	22	17	34	1.96
47981200--47981299	24	4.0	24	85	10	137	39	16	20	25	1.92
47981200--47981311	24	4.3	28	81	13	132	37	15	21	25	1.92
47981200--47981311	52	2.2	52	93	0	188	37	15	21	25	1.92
47981341--47981635	51	5.8	51	91	1	434	30	13	25	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47989842--47989872	14	2.2	14	94	0	53	51	6	0	41	1.27
47993991--47994028	19	2.1	18	90	5	58	55	7	0	36	1.29
47993989--47994037	22	2.4	19	83	10	62	53	6	0	40	1.26
47998275--47998441	68	2.5	68	82	3	201	25	22	16	35	1.95
48002607--48002736	40	3.3	39	76	8	136	23	27	23	24	2.00
48002623--48002774	40	3.8	40	78	6	148	22	26	23	27	1.99
48002623--48002772	80	1.9	80	83	8	198	22	26	24	27	1.99
48010370--48010639	39	7.1	40	87	11	356	24	29	23	22	1.99
48010370--48010639	79	3.6	78	87	8	366	24	29	23	22	1.99
48010510--48010638	69	1.9	69	91	3	215	21	30	25	22	1.99
48018488--48018778	40	7.4	40	90	4	425	25	28	22	23	1.99
48018488--48018778	117	2.5	117	90	4	442	25	28	22	23	1.99
48019562--48019614	21	2.5	21	96	0	97	26	33	0	39	1.57
48026214--48026331	55	2.1	54	83	4	155	27	31	19	21	1.97
48027107--48027425	47	6.7	47	74	14	230	24	30	19	26	1.98
48027208--48027425	94	2.4	91	83	8	264	24	31	18	25	1.98
48027540--48027605	32	2.1	32	94	0	114	46	16	6	30	1.71
48030649--48030682	14	2.4	14	100	0	68	41	8	32	17	1.80
48034511--48034564	27	2.0	27	100	0	108	18	18	33	29	1.95
48034878--48035000	41	3.0	41	100	0	246	29	7	29	34	1.84
48038570--48038613	18	2.4	18	96	0	79	27	18	20	34	1.96
48039868--48039913	22	2.0	22	83	8	56	52	15	4	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48040596--48040857	39	6.7	39	91	0	427	29	28	22	19	1.98
48040596--48040895	155	1.9	155	88	4	453	28	28	23	20	1.99
48041364--48041388	2	12.5	2	100	0	50	52	48	0	0	1.00
48041569--48041606	20	1.9	20	88	0	58	34	2	10	52	1.50
48043233--48043301	28	2.5	28	95	2	122	43	27	10	18	1.82
48051324--48051449	55	2.3	55	89	4	193	30	31	16	20	1.95
48054150--48054278	43	3.0	43	82	5	154	29	19	27	24	1.98
48054114--48054277	86	1.9	85	81	8	199	26	20	28	24	1.99
48057465--48057607	47	3.0	47	100	0	286	48	16	12	21	1.79
48059316--48059482	40	4.2	40	82	2	185	25	27	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433