genome.fa.s6.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  165  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51536986--51537067	27	3.0	27	85	8	78	29	15	24	30	1.96
51538509--51538552	22	2.0	22	95	0	79	11	18	40	29	1.85
51538963--51539034	36	2.0	36	100	0	144	22	22	30	25	1.99
51538889--51539106	120	1.8	119	88	1	337	22	31	23	22	1.99
51539835--51539884	13	3.8	13	78	0	55	36	8	22	34	1.83
51541458--51541483	2	13.0	2	100	0	52	50	0	0	50	1.00
51545705--51545806	52	2.0	52	88	0	150	36	8	18	36	1.82
51550190--51550404	49	4.5	47	77	10	170	25	28	18	27	1.98
51550272--51550409	48	2.8	50	84	8	196	24	31	18	26	1.97
51552844--51552877	11	3.0	11	91	4	50	8	2	8	79	1.03
51556667--51556898	49	4.7	49	86	2	302	29	27	17	25	1.97
51556665--51556899	99	2.4	101	88	2	350	29	27	17	25	1.97
51563100--51563227	40	3.2	40	82	6	143	25	22	27	25	2.00
51567998--51568037	21	2.0	21	95	5	73	20	30	40	10	1.85
51569144--51569268	48	2.6	48	85	5	153	24	28	18	28	1.98
51570773--51570810	20	1.9	20	88	0	58	34	2	10	52	1.50
51572424--51572492	28	2.5	28	95	2	122	43	27	10	18	1.82
51577857--51578016	29	5.6	28	85	3	185	26	32	16	25	1.96
51577858--51578016	87	1.8	86	83	4	212	26	32	16	25	1.96
51588040--51588200	29	5.6	29	87	1	207	26	32	16	25	1.96
51590201--51590238	20	1.9	20	88	0	58	34	2	10	52	1.50
51591865--51591933	28	2.5	28	90	2	113	43	26	10	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51598654--51598714	26	2.4	25	78	10	70	26	22	21	29	1.99
51598763--51598818	20	2.8	20	91	0	94	32	17	12	37	1.88
51598763--51598820	11	5.6	11	72	15	61	31	17	13	37	1.89
51598763--51598827	20	3.2	21	79	16	75	32	18	12	36	1.88
51606717--51606789	26	2.8	25	95	0	110	24	24	26	24	2.00
51606839--51606911	20	3.7	20	88	0	119	31	20	12	35	1.90
51606839--51606931	9	9.4	10	71	17	63	33	19	11	35	1.88
51610932--51611098	40	4.2	40	82	2	185	24	26	22	26	2.00
51618921--51619087	40	4.2	40	82	2	185	24	26	22	26	2.00
51623900--51623931	16	2.0	16	100	0	64	37	6	12	43	1.68
51629793--51629960	40	4.2	39	78	12	162	23	22	28	26	1.99
51629793--51629960	80	2.1	79	86	4	230	23	22	28	26	1.99
51639572--51639701	29	4.5	29	86	6	165	31	13	26	28	1.94
51644427--51644497	35	2.0	35	100	0	142	30	11	14	43	1.80
51646108--51646208	28	3.6	28	84	1	130	24	9	37	27	1.87
51646162--51646221	29	2.1	29	84	6	77	30	15	33	21	1.94
51650573--51650602	11	2.7	11	94	0	51	40	36	10	13	1.78
51651507--51651556	23	2.1	25	82	14	61	46	10	4	40	1.56
51653679--51653832	39	3.9	39	86	0	182	23	21	31	24	1.98
51653679--51653832	79	1.9	79	84	2	202	23	21	31	24	1.98
51672824--51672874	26	2.0	26	92	7	86	29	13	21	35	1.92
51675815--51675932	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51675783--51675946	71	2.3	71	100	0	328	35	17	28	18	1.94
51682367--51682533	42	4.0	43	80	9	191	31	27	18	22	1.97
51682838--51682875	20	1.9	20	88	0	58	34	2	10	52	1.50
51690764--51690801	20	1.9	20	88	0	58	34	2	10	52	1.50
51694436--51694464	14	2.0	15	93	6	51	48	20	0	31	1.50
51695479--51695525	24	2.0	24	83	8	60	29	23	17	29	1.97
51695499--51695550	25	2.1	25	82	3	61	26	17	21	34	1.95
51696955--51697152	71	2.8	70	92	3	294	33	17	28	20	1.95
51697021--51697138	41	3.1	41	60	28	98	32	17	28	21	1.96
51696989--51697152	71	2.3	71	100	0	328	35	17	28	18	1.94
51704521--51704718	71	2.8	70	92	3	294	33	17	28	20	1.95
51704587--51704704	41	3.1	41	60	28	98	32	17	28	21	1.96
51704555--51704718	71	2.3	71	100	0	328	35	17	28	18	1.94
51708586--51708776	77	2.4	78	90	1	294	24	29	20	25	1.99
51708555--51708775	39	5.6	39	89	1	291	23	29	22	24	1.99
51708555--51708775	116	1.9	118	90	1	356	23	29	22	24	1.99
51708586--51708776	39	4.9	39	92	1	294	24	29	20	25	1.99
51716663--51716882	39	5.6	39	88	1	296	23	30	21	25	1.99
51716663--51716882	117	1.9	118	90	0	352	23	30	21	25	1.99
51722258--51722357	38	2.6	38	88	3	157	27	12	30	31	1.92
51722341--51722451	48	2.3	47	89	1	168	33	17	18	30	1.94
51722426--51722500	38	2.0	38	86	0	105	30	17	26	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51724633--51724720	27	3.3	26	88	4	131	18	23	21	36	1.95
51736864--51736899	18	1.9	19	88	5	56	63	0	25	11	1.27
51738243--51738371	29	4.4	29	95	1	222	37	13	23	25	1.91
51738243--51738371	59	2.2	58	92	1	222	37	13	23	25	1.91
51741274--51741386	40	2.8	40	86	0	154	23	23	29	23	1.99
51744629--51744839	27	7.8	27	87	0	296	29	21	7	40	1.81
51744629--51744839	81	2.6	81	91	1	343	29	21	7	40	1.81
51744629--51744867	54	4.4	53	82	6	221	30	21	7	39	1.81
51744616--51744957	81	4.2	81	82	1	265	34	21	7	35	1.82
51744832--51744979	27	5.5	28	82	9	146	41	20	8	29	1.81
51744832--51744979	54	2.7	54	84	4	165	41	20	8	29	1.81
51744819--51744997	81	2.2	81	80	5	209	40	20	8	30	1.83
51744819--51744997	54	3.3	54	77	6	148	40	20	8	30	1.83
51745001--51745190	27	7.0	27	91	0	299	33	21	22	23	1.97
51756419--51756568	40	3.8	39	80	3	140	23	28	22	26	1.99
51758972--51758999	13	2.2	13	100	0	56	25	14	0	60	1.34
51762298--51762422	6	20.3	6	72	19	89	50	16	15	18	1.78
51762298--51762422	19	6.8	18	71	20	89	50	16	15	18	1.78
51762312--51762422	31	3.6	31	90	2	170	50	16	15	18	1.78
51762541--51762600	27	2.3	26	85	2	75	35	20	23	21	1.96
51762934--51763050	27	4.3	27	80	8	139	26	20	17	35	1.94
51762935--51763050	54	2.1	54	84	3	153	26	20	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51763030--51763102	27	2.7	26	68	8	65	32	9	23	34	1.87
51763068--51763453	81	4.8	80	77	6	251	30	9	21	39	1.84
51763151--51763432	27	10.4	27	82	1	341	30	8	21	39	1.84
51774430--51774487	22	2.6	22	97	0	107	53	6	5	34	1.50
51774635--51774690	18	3.2	18	79	2	60	30	3	0	66	1.09
51774696--51774734	19	2.1	19	90	4	62	38	0	5	56	1.22
51781983--51782021	16	2.5	15	87	4	51	28	5	0	66	1.12
51781982--51782021	15	2.5	16	84	8	55	27	7	0	65	1.20
51783956--51784154	53	3.7	53	92	0	299	19	26	18	36	1.94
51787198--51787422	48	4.8	48	73	7	183	25	21	24	28	1.99
51798862--51799044	39	4.6	39	86	0	231	24	21	30	23	1.99
51803720--51803767	24	2.0	24	91	0	78	37	18	22	20	1.94
51805178--51805244	33	2.0	33	100	0	134	35	16	17	29	1.92
51805627--51805696	35	2.0	35	91	0	113	42	12	17	27	1.85
51806173--51806207	17	2.1	17	89	10	54	40	5	14	40	1.69
51806243--51806467	113	2.0	113	87	1	326	31	15	16	36	1.90
51807169--51807213	23	2.0	23	100	0	90	48	17	15	17	1.81
51813622--51813733	27	4.2	26	87	5	134	35	23	24	16	1.95
51813622--51813733	54	2.1	54	86	6	156	35	23	24	16	1.95
51814122--51814151	8	3.8	8	90	0	51	3	26	26	43	1.70
51817279--51817391	27	4.2	26	82	7	118	17	23	21	37	1.94
51817279--51817391	54	2.1	54	83	6	140	17	23	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51827609--51827738	40	3.2	40	81	2	163	23	23	28	24	2.00
51833654--51833741	27	3.3	27	84	4	115	19	23	22	34	1.97
51834917--51834996	2	40.0	2	100	0	160	50	50	0	0	1.00
51834996--51835021	2	13.0	2	100	0	52	50	0	0	50	1.00
51835989--51836022	5	6.4	5	87	12	50	73	0	0	26	0.83
51835990--51836023	11	3.1	11	100	0	68	70	0	0	29	0.87
51835989--51836022	16	2.1	16	89	10	52	73	0	0	26	0.83
51852858--51852940	31	2.7	31	94	3	143	27	27	16	27	1.97
51853160--51853229	25	2.8	25	86	0	104	27	22	22	27	1.99
51854039--51854116	27	2.9	27	79	11	88	20	20	21	37	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433