genome.fa.s6.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  122  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37292991--37293050	20	3.0	20	90	2	93	36	11	20	31	1.88
37293094--37293187	23	4.0	24	82	13	115	28	20	24	26	1.99
37293373--37293535	38	4.4	38	84	11	232	38	17	22	22	1.93
37293397--37293512	31	3.5	31	80	15	142	41	14	20	23	1.89
37293373--37293512	69	2.0	69	98	0	271	39	15	21	23	1.92
37296267--37296340	29	2.6	29	95	0	139	27	14	31	27	1.95
37296324--37296398	28	2.6	28	78	2	87	22	20	36	21	1.96
37296267--37296398	58	2.3	57	80	3	131	25	17	33	24	1.96
37304141--37304214	29	2.6	29	95	0	139	27	14	31	27	1.95
37304198--37304272	28	2.6	28	78	2	87	22	20	36	21	1.96
37304141--37304272	58	2.3	57	80	3	131	25	17	33	24	1.96
37307085--37307194	26	4.2	26	94	2	177	34	4	24	36	1.76
37308806--37308945	27	5.2	27	86	2	174	18	24	22	35	1.96
37308806--37308944	54	2.6	55	88	2	192	18	24	21	35	1.96
37312896--37313005	26	4.2	26	94	2	177	34	4	24	36	1.76
37314453--37314516	26	2.4	26	86	5	83	31	25	14	29	1.94
37314620--37314759	27	5.2	27	85	2	165	18	23	22	35	1.95
37314620--37314759	54	2.6	55	87	2	185	18	23	22	35	1.95
37317920--37317998	30	2.6	30	95	0	140	34	17	21	26	1.96
37318340--37318561	47	4.7	46	77	8	153	27	21	28	22	1.99
37324151--37324305	39	3.9	39	91	0	238	23	30	20	25	1.98
37328517--37328564	21	2.3	21	86	10	64	60	4	16	18	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37329770--37329845	31	2.5	30	74	8	73	38	0	5	56	1.22
37331680--37331837	46	3.4	46	95	0	280	37	15	24	22	1.93
37331779--37331894	57	2.0	57	94	0	205	39	12	25	22	1.89
37331836--37332056	46	4.8	46	90	1	300	41	13	23	21	1.89
37331680--37332012	92	3.5	97	85	8	443	39	14	23	22	1.91
37331687--37331979	149	2.0	149	92	0	487	38	14	24	22	1.91
37332341--37332373	17	2.0	17	88	5	50	48	3	15	33	1.60
37332401--37332449	15	3.4	15	70	30	52	32	8	12	46	1.71
37332398--37332455	28	2.1	28	100	0	116	32	6	13	46	1.70
37347734--37347931	71	2.8	70	92	3	294	33	17	28	20	1.95
37347800--37347917	41	3.1	41	60	28	98	32	17	28	21	1.96
37347768--37347931	71	2.3	71	100	0	328	35	17	28	18	1.94
37355300--37355497	71	2.8	70	92	3	294	33	17	28	20	1.95
37355366--37355483	41	3.1	41	60	28	98	32	17	28	21	1.96
37355334--37355497	71	2.3	71	100	0	328	35	17	28	18	1.94
37364410--37364675	47	5.7	46	78	12	222	27	19	29	23	1.98
37364407--37364676	94	2.9	94	80	9	309	27	20	29	23	1.98
37368736--37368942	44	4.4	46	79	10	197	27	20	28	22	1.99
37368775--37368945	92	1.8	94	87	7	260	27	19	30	22	1.98
37374631--37374700	27	2.6	27	97	2	131	31	27	12	28	1.93
37378511--37378659	80	1.9	80	81	2	183	22	30	24	22	1.99
37378552--37378659	40	2.7	38	85	8	128	21	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37386559--37386659	28	3.5	28	86	6	114	29	26	13	29	1.94
37394516--37394616	28	3.5	28	86	6	114	29	26	13	29	1.94
37397476--37397578	37	2.8	37	93	0	179	25	32	19	23	1.98
37397751--37398020	48	5.6	48	97	0	495	30	26	7	35	1.84
37400201--37400389	94	2.0	94	100	0	378	39	12	11	37	1.79
37401645--37401777	29	4.7	29	78	6	137	32	30	15	21	1.95
37401783--37401970	40	4.7	40	94	2	281	26	30	22	21	1.99
37403251--37403350	36	2.8	37	92	4	161	25	32	19	24	1.98
37403522--37403877	48	7.4	48	98	0	678	30	28	7	34	1.84
37405231--37405257	2	13.5	2	100	0	54	48	0	0	51	1.00
37408172--37408214	20	2.2	20	100	0	86	39	13	20	25	1.90
37409137--37409252	54	2.1	54	95	0	205	31	25	18	25	1.97
37418769--37418880	27	4.1	27	79	14	106	37	21	23	17	1.94
37418769--37418880	54	2.1	54	84	3	145	37	21	23	17	1.94
37423002--37423040	19	2.1	19	100	0	78	43	5	20	30	1.73
37427187--37427368	46	4.0	46	89	1	249	39	14	24	21	1.91
37430931--37431047	43	2.7	43	94	0	198	25	13	29	30	1.94
37434529--37434615	43	2.0	42	95	2	156	32	17	14	35	1.90
37435456--37435498	22	2.0	22	85	0	59	6	23	2	67	1.27
37436738--37436853	27	4.3	26	81	8	124	16	22	23	37	1.93
37436738--37436853	55	2.1	54	84	4	144	16	22	23	37	1.93
37440012--37440042	5	6.2	5	100	0	62	0	80	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446640--37446683	22	2.0	22	83	12	56	56	6	6	29	1.51
37446844--37446906	20	3.2	18	70	16	54	61	0	3	34	1.12
37446841--37446941	50	2.0	51	81	12	120	60	0	3	35	1.15
37446952--37447007	20	2.7	22	81	10	64	60	0	3	35	1.14
37446971--37447033	20	3.0	21	80	17	76	66	0	4	28	1.12
37446958--37447033	33	2.4	34	80	12	81	64	0	3	31	1.12
37446958--37447033	10	7.2	10	75	20	66	64	0	3	31	1.12
37451768--37451946	40	4.4	40	86	0	223	25	26	22	26	2.00
37457331--37457442	29	3.9	29	78	12	106	27	16	29	25	1.97
37460624--37460973	45	7.9	45	87	1	476	27	28	19	23	1.98
37471439--37471486	25	1.9	25	86	0	69	33	25	16	25	1.96
37471530--37471588	20	3.0	20	92	0	100	37	11	20	30	1.89
37471639--37471733	24	4.0	24	85	10	124	28	21	24	26	1.99
37471640--37471733	47	2.0	49	85	12	133	27	21	24	26	1.99
37471925--37472087	38	4.4	38	84	11	232	38	17	22	22	1.93
37471949--37472064	31	3.5	31	80	15	142	41	14	20	23	1.89
37471925--37472064	69	2.0	69	98	0	271	39	15	21	23	1.92
37479785--37479832	25	1.9	25	86	0	69	33	25	16	25	1.96
37479876--37479934	20	3.0	20	92	0	100	37	11	20	30	1.89
37479985--37480079	24	4.0	24	85	10	124	28	21	24	26	1.99
37479986--37480079	47	2.0	49	85	12	133	27	21	24	26	1.99
37480271--37480430	37	4.4	38	82	14	196	38	16	23	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37480294--37480370	31	2.5	31	93	2	129	41	14	20	23	1.89
37480324--37480430	38	2.8	38	90	4	171	40	14	22	22	1.91
37480271--37480407	68	2.0	67	94	4	240	39	15	21	23	1.91
37488193--37488293	28	3.5	28	86	6	114	29	13	26	29	1.94
37489705--37489974	47	5.7	46	74	11	208	28	20	28	22	1.98
37495689--37495811	44	2.7	45	81	5	140	34	14	21	29	1.93
37499811--37500129	94	3.4	95	77	7	310	26	19	29	24	1.98
37499811--37500130	47	6.8	45	76	8	221	26	19	29	24	1.98
37506336--37506360	5	5.0	5	100	0	50	20	0	0	80	0.72
37507419--37507580	26	6.2	26	94	0	261	32	5	24	37	1.79
37507419--37507580	78	2.1	78	96	0	297	32	5	24	37	1.79
37509019--37509093	26	2.8	26	85	4	87	34	22	12	30	1.91
37509195--37509334	27	5.2	27	88	2	183	17	24	22	35	1.96
37509195--37509334	54	2.6	55	89	2	203	17	24	22	35	1.96
37513303--37513464	26	6.2	26	94	0	261	32	5	24	37	1.79
37513303--37513464	78	2.1	78	96	0	297	32	5	24	37	1.79
37515076--37515214	27	5.2	27	86	4	174	17	24	22	35	1.96
37515076--37515214	53	2.6	54	88	3	192	17	24	22	35	1.96
37521384--37521438	28	1.9	29	85	3	76	20	38	21	20	1.94
37529512--37529619	26	4.2	26	91	0	180	32	6	24	37	1.81
37531404--37531690	137	2.1	137	96	0	520	25	18	24	32	1.97
37536725--37536832	26	4.2	26	93	0	189	32	7	24	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37538609--37538895	137	2.1	137	95	0	511	24	19	24	31	1.98
37551270--37551384	43	2.7	43	81	11	164	23	19	26	30	1.98
37553262--37553293	15	2.1	15	100	0	64	0	31	0	68	0.90
37553297--37553343	24	1.9	25	82	4	60	14	25	2	57	1.49
37556314--37556355	20	2.0	22	86	9	61	42	7	9	40	1.65
37556328--37556366	20	2.0	19	85	5	51	41	5	7	46	1.55
37557490--37557517	5	5.6	5	100	0	56	82	0	0	17	0.68
37569552--37569594	2	21.5	2	100	0	86	51	0	0	48	1.00
37569999--37570081	39	2.1	39	82	12	100	53	3	0	43	1.18
37570697--37570734	6	6.3	6	100	0	76	34	15	0	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433