genome.fa.s6.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  133  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40946705--40946767	30	2.1	30	93	0	108	57	14	3	25	1.52
40948457--40948519	24	2.6	24	84	2	81	42	15	22	19	1.88
40949320--40949365	16	2.9	16	80	0	56	26	2	15	56	1.50
40949518--40949619	50	2.1	50	94	1	179	41	4	3	50	1.42
40952409--40952453	2	22.5	2	100	0	90	48	0	0	51	1.00
40952502--40952665	85	1.9	85	83	2	213	48	4	6	41	1.47
40953711--40953754	21	2.2	20	88	12	63	65	0	4	29	1.12
40953948--40953997	19	2.6	18	87	9	64	26	4	0	70	1.05
40954071--40954109	20	1.9	21	84	5	53	30	2	2	64	1.21
40954334--40954459	61	2.1	61	95	1	227	36	9	15	38	1.80
40965263--40965348	42	2.0	42	95	0	154	43	11	8	37	1.71
40975690--40975760	38	1.9	38	83	8	94	47	0	5	46	1.26
40980425--40980487	25	2.5	25	76	5	65	55	14	1	28	1.48
40989159--40989192	18	1.9	18	88	5	52	20	11	20	47	1.81
40990870--40990896	13	2.1	13	100	0	54	18	14	14	51	1.76
40991854--40991983	40	3.3	39	83	4	163	23	28	25	23	1.99
40999799--40999966	40	4.2	40	81	4	178	23	27	23	24	2.00
41001576--41001608	16	2.1	16	100	0	66	24	12	27	36	1.91
41003151--41003382	48	4.9	48	71	11	181	26	16	25	31	1.97
41010925--41011191	48	5.6	48	71	12	167	25	19	26	29	1.98
41013260--41013588	48	6.9	48	80	1	372	26	29	17	26	1.98
41013260--41013584	96	3.4	96	93	0	560	26	29	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41015477--41015540	30	2.2	29	91	2	101	35	23	15	25	1.94
41017841--41017920	41	2.0	41	85	14	112	13	37	25	23	1.92
41018860--41019131	47	5.8	48	81	8	251	24	28	18	28	1.98
41026413--41026530	46	2.5	46	85	8	141	25	27	18	28	1.98
41028601--41028646	15	3.1	15	90	6	67	78	4	0	17	0.91
41032359--41032419	30	2.0	30	83	0	77	31	22	8	37	1.84
41036454--41036486	16	2.1	16	100	0	66	42	0	0	57	0.98
41036436--41036501	19	3.6	17	75	20	71	43	0	0	56	0.99
41036520--41036563	22	1.9	23	81	9	54	61	0	2	36	1.09
41038079--41038137	28	2.1	28	96	0	109	23	13	20	42	1.88
41054976--41055010	7	4.7	7	89	10	52	17	0	2	80	0.84
41054995--41055054	24	2.5	24	81	13	61	28	0	1	70	0.97
41059889--41060002	27	4.2	26	80	8	104	40	17	8	33	1.81
41059999--41060209	27	7.8	27	90	0	251	28	24	8	38	1.84
41060115--41060221	54	2.0	54	83	0	133	32	19	6	41	1.77
41060188--41060326	54	2.6	53	85	5	190	38	21	8	31	1.84
41060202--41060439	27	8.8	27	78	4	203	39	19	9	31	1.84
41060457--41060530	27	2.7	27	72	15	80	36	21	18	22	1.95
41061337--41061434	26	3.8	26	98	1	189	26	26	23	23	2.00
41062941--41063105	40	4.2	40	79	6	138	25	25	21	27	2.00
41070490--41070656	40	4.2	40	82	2	185	24	26	22	26	2.00
41072360--41072454	42	2.2	44	86	5	131	29	15	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41072478--41072585	31	3.5	31	86	7	143	29	18	25	25	1.98
41073482--41073584	40	2.6	40	80	6	102	38	18	9	33	1.83
41073495--41073584	20	4.5	19	75	10	65	38	17	10	33	1.83
41073554--41073592	20	2.1	19	85	9	53	41	15	7	35	1.76
41074043--41074116	36	2.1	36	100	0	148	45	18	2	32	1.64
41080110--41080155	20	2.3	20	84	0	56	34	21	8	34	1.84
41080414--41080493	23	3.5	23	74	6	65	37	18	20	23	1.94
41082600--41082634	18	1.9	18	88	0	52	37	2	31	28	1.72
41088835--41088876	5	8.2	5	91	2	57	38	0	23	38	1.55
41089283--41089420	45	3.1	45	90	0	204	19	18	21	41	1.91
41089305--41089434	45	2.9	45	88	0	188	19	18	20	41	1.90
41089415--41089452	18	2.1	18	90	0	58	21	21	13	44	1.85
41090935--41091002	30	2.3	30	84	5	84	45	5	19	29	1.73
41092928--41093103	46	3.8	46	81	10	232	20	21	29	28	1.98
41092924--41093095	93	1.8	93	96	0	317	20	22	30	27	1.98
41096053--41096121	15	4.6	15	83	0	84	11	17	13	57	1.64
41096044--41096131	30	3.0	30	81	8	99	10	17	15	56	1.66
41098513--41098688	46	3.8	46	81	10	232	20	21	29	28	1.98
41098509--41098680	93	1.8	93	96	0	317	20	22	30	27	1.98
41102317--41102458	70	2.0	70	83	2	178	22	20	22	34	1.97
41102476--41102524	23	2.1	23	92	0	80	16	26	20	36	1.93
41104689--41105218	269	2.0	269	97	0	1006	28	12	21	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41107031--41107164	40	3.3	40	80	0	133	32	24	16	26	1.96
41114486--41114578	40	2.3	40	85	1	125	33	23	16	26	1.95
41117135--41117194	30	2.0	30	90	0	93	31	18	16	33	1.93
41124669--41124710	21	2.0	22	90	4	68	69	2	28	0	1.01
41126262--41126332	5	14.4	5	97	2	135	40	0	0	59	0.98
41127323--41127366	19	2.4	19	85	7	56	50	0	9	40	1.34
41131561--41131604	19	2.4	19	85	7	56	50	0	9	40	1.34
41135592--41135627	13	2.8	14	80	20	51	50	0	22	27	1.50
41135592--41135641	26	2.0	25	84	11	66	50	0	22	28	1.49
41146661--41146778	41	3.1	41	60	28	98	32	17	28	21	1.96
41146629--41146792	71	2.3	71	100	0	328	35	17	28	18	1.94
41153728--41153845	41	3.1	41	60	28	98	32	17	28	21	1.96
41153696--41153859	71	2.3	71	100	0	328	35	17	28	18	1.94
41156376--41156417	5	8.4	5	100	0	84	40	0	0	59	0.97
41157982--41158116	39	3.4	39	74	6	112	23	20	28	28	1.99
41158231--41158278	25	2.0	24	84	12	62	47	0	22	29	1.51
41158239--41158278	19	2.2	17	86	8	53	47	0	22	30	1.52
41172584--41172713	40	3.3	39	76	8	136	23	27	23	24	2.00
41172600--41172751	40	3.8	40	78	6	148	22	26	23	27	1.99
41172600--41172749	80	1.9	80	83	8	198	22	26	24	27	1.99
41179603--41179639	19	1.9	19	94	0	65	51	13	13	21	1.75
41181761--41181928	40	4.2	40	76	16	170	23	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41181761--41181911	80	1.9	79	87	5	223	24	21	27	26	1.99
41181761--41181928	80	2.1	79	85	4	221	23	20	28	27	1.99
41188911--41188996	39	2.3	37	77	15	88	67	2	6	23	1.27
41191585--41191774	38	4.9	38	83	2	218	32	25	20	21	1.97
41192694--41192816	64	1.9	64	100	0	246	34	23	3	39	1.71
41192799--41192833	17	2.1	17	100	0	70	34	22	0	42	1.54
41192735--41192897	81	2.0	81	100	0	326	34	23	2	39	1.68
41197323--41197416	49	1.9	49	95	0	170	38	18	26	17	1.92
41199895--41200046	38	3.9	38	85	3	178	32	25	21	21	1.98
41202782--41202853	36	2.0	35	97	2	135	54	0	12	33	1.38
41209405--41209806	47	8.6	47	76	9	247	27	17	28	25	1.98
41209405--41209616	93	2.3	91	88	4	300	30	17	27	24	1.97
41209407--41209766	49	7.7	47	72	12	204	28	18	28	24	1.98
41224244--41224413	46	3.7	46	77	13	179	30	18	28	22	1.97
41224244--41224642	47	8.5	46	73	10	222	28	19	28	24	1.98
41224244--41224460	94	2.3	92	85	6	276	29	18	28	23	1.97
41226441--41226465	13	1.9	13	100	0	50	8	20	40	32	1.81
41234492--41234543	25	2.0	26	85	3	70	34	13	15	36	1.87
41238505--41238539	13	2.7	13	95	0	61	45	20	2	31	1.65
41239207--41239300	3	31.7	3	85	10	131	63	2	0	34	1.06
41245838--41245871	12	2.8	12	90	4	50	47	8	0	44	1.34
41246424--41246488	24	2.8	25	73	19	59	46	6	0	47	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41252157--41252200	6	7.2	6	85	14	63	36	13	15	34	1.87
41260277--41260305	4	7.2	4	100	0	58	75	0	0	24	0.80
41263037--41263061	6	4.2	6	100	0	50	52	16	0	32	1.44
41271252--41271365	43	2.7	43	90	0	174	24	14	27	33	1.95
41273457--41273631	46	3.8	45	76	13	176	21	22	28	27	1.99
41273454--41273624	93	1.8	93	91	0	279	21	22	28	27	1.99
41278685--41278862	46	3.8	46	78	7	207	29	27	20	21	1.98
41278692--41278863	93	1.8	93	93	0	299	29	27	20	22	1.99
41287833--41288031	39	5.1	39	93	0	326	22	24	30	22	1.99
41298502--41298576	34	2.2	34	83	4	98	18	13	33	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433