genome.fa.s6.2.7.7.80.10.50.1000.300.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr06 132263754 
Parameters: 2 7 7 80 10 50 1000
Length:  132263754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   

This is table  300  of  433  ( 51894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93678607--93678636	15	2.1	15	93	6	53	36	26	6	30	1.82
93679068--93679197	49	2.6	51	82	4	158	26	15	30	27	1.96
93689452--93689601	57	2.6	57	75	7	144	28	18	21	32	1.96
93698229--93698412	40	4.6	39	75	6	138	26	23	27	22	2.00
93698269--93698457	80	2.4	81	77	4	186	23	24	29	22	1.99
93706342--93706525	40	4.6	39	75	6	138	26	23	27	22	2.00
93706382--93706570	80	2.4	81	77	4	186	23	24	29	22	1.99
93710178--93710323	39	3.7	39	88	0	220	23	21	25	28	1.99
93717088--93717113	2	13.0	2	100	0	52	50	0	0	50	1.00
93718166--93718390	39	5.8	38	89	4	242	21	22	28	28	1.99
93718206--93718390	39	4.7	39	93	0	316	21	22	28	28	1.99
93723340--93723409	35	2.0	35	97	0	131	21	22	11	44	1.84
93726405--93726525	44	2.8	43	80	7	129	31	26	18	23	1.97
93726366--93726523	86	1.8	85	86	4	228	30	26	17	25	1.97
93728326--93728359	16	2.1	16	88	0	50	38	2	0	58	1.13
93728413--93728456	22	2.1	21	84	16	56	63	0	0	36	0.95
93729104--93729155	24	2.2	24	92	0	86	51	7	3	36	1.49
93731487--93731653	43	3.9	44	82	4	189	26	14	25	32	1.94
93734726--93734755	2	15.0	2	100	0	60	50	0	0	50	1.00
93735829--93735868	20	2.0	20	95	0	71	32	5	27	35	1.79
93736110--93736151	22	2.0	21	90	4	66	30	0	4	64	1.14
93736110--93736165	22	2.6	22	83	8	62	28	0	7	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93742964--93743022	29	2.1	29	81	6	68	28	22	15	33	1.94
93742893--93743187	145	2.0	145	98	0	572	30	25	16	28	1.97
93743120--93743221	28	3.5	29	81	6	109	28	27	14	29	1.95
93750974--93751032	29	2.1	29	81	6	68	28	22	15	33	1.94
93750903--93751197	145	2.0	145	100	0	590	29	25	16	27	1.97
93751130--93751231	28	3.5	29	81	6	109	28	27	14	29	1.95
93754010--93754035	2	13.0	2	100	0	52	50	0	0	50	1.00
93755383--93755424	22	2.0	21	90	4	66	30	0	7	61	1.22
93755388--93755438	22	2.3	23	80	10	61	27	0	9	62	1.26
93756055--93756098	19	2.3	18	85	14	54	34	18	0	47	1.49
93757457--93757553	22	4.3	23	75	12	94	34	17	23	24	1.96
93762407--93762509	29	3.6	29	81	2	118	21	16	33	29	1.95
93764263--93764308	21	2.2	22	77	18	53	41	17	2	39	1.62
93773664--93773750	31	2.8	31	85	1	131	27	26	14	31	1.95
93774059--93774117	9	5.8	11	84	11	65	37	18	8	35	1.81
93778122--93778245	23	5.3	23	77	13	130	35	16	21	25	1.95
93778361--93778447	45	1.9	45	100	0	174	41	17	11	29	1.84
93785337--93785460	43	2.9	42	74	8	115	30	12	22	33	1.92
93787714--93787835	42	2.9	42	78	0	136	31	18	25	25	1.97
93797072--93797313	55	4.6	54	76	10	209	35	17	24	21	1.95
93797382--93797426	23	1.9	24	90	4	74	42	11	24	22	1.86
93797505--93797535	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93807988--93808099	58	1.9	58	85	0	152	30	16	23	29	1.96
93810882--93811031	67	2.2	67	81	8	171	32	17	28	21	1.96
93812525--93812562	18	2.1	18	100	0	76	42	21	21	15	1.89
93812878--93813187	46	6.5	48	74	13	186	28	17	28	25	1.97
93813063--93813182	47	2.5	48	85	12	160	25	17	30	26	1.97
93816311--93816479	46	3.7	47	82	10	181	25	30	17	26	1.97
93816308--93816532	94	2.4	92	79	12	239	24	30	18	26	1.98
93822364--93822551	72	2.6	72	84	6	211	25	18	26	29	1.98
93827291--93827470	40	4.5	40	79	8	172	23	26	23	26	2.00
93827322--93827470	79	1.9	80	83	6	196	24	28	21	25	1.99
93835322--93835506	79	2.3	81	83	7	227	23	27	24	24	2.00
93835315--93835506	40	4.8	39	76	8	163	23	28	23	24	2.00
93837695--93837719	13	1.9	13	100	0	50	48	0	20	32	1.50
93840561--93840748	72	2.6	71	83	3	207	24	18	26	30	1.98
93843695--93843747	27	2.0	27	96	0	97	54	1	0	43	1.11
93844980--93845006	4	6.8	4	100	0	54	77	0	0	22	0.76
93846776--93846900	42	2.9	43	90	2	207	31	28	20	20	1.97
93846777--93846913	43	3.2	42	89	3	211	30	29	19	19	1.97
93851651--93851719	15	4.7	15	75	5	61	36	40	0	23	1.55
93851778--93851871	46	2.0	46	91	0	152	41	24	3	30	1.71
93851835--93851886	14	3.7	14	78	0	50	46	25	1	26	1.63
93851891--93851938	25	1.9	25	95	0	87	43	8	2	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93852069--93852359	41	7.1	41	89	1	388	18	24	22	35	1.96
93856002--93856040	2	19.5	2	100	0	78	51	0	0	48	1.00
93859115--93859209	46	2.1	46	91	0	154	62	9	4	24	1.44
93866356--93866531	46	3.8	46	74	12	180	22	20	27	29	1.98
93869598--93869641	22	2.0	23	95	4	81	38	25	18	18	1.92
93869846--93869929	28	3.0	29	89	5	127	46	29	3	20	1.67
93869832--93869929	28	3.8	23	79	16	72	46	31	4	17	1.66
93875432--93875600	46	3.6	45	78	13	150	24	31	17	26	1.97
93877920--93878070	40	3.8	40	77	13	134	27	23	26	22	2.00
93877957--93878086	40	3.2	40	77	4	138	24	23	27	23	2.00
93885927--93886077	40	3.8	40	77	13	134	27	23	26	22	2.00
93885964--93886093	40	3.2	40	77	4	138	24	23	27	23	2.00
93900952--93901017	28	2.2	32	71	23	77	18	36	22	22	1.95
93900959--93901025	28	2.4	28	92	0	107	16	37	20	25	1.93
93906809--93906972	71	2.3	71	97	0	310	18	28	18	34	1.95
93906809--93907006	71	2.8	70	90	3	249	20	28	17	32	1.96
93912563--93912733	46	3.7	46	78	13	197	28	27	21	22	1.99
93912568--93912737	93	1.8	92	92	1	286	28	28	21	22	1.99
93917652--93917698	17	2.5	18	83	13	51	17	29	0	53	1.44
93921023--93921058	14	2.6	14	95	4	65	27	27	8	36	1.86
93924876--93924909	11	3.2	11	83	8	52	35	20	11	32	1.89
93924867--93924909	21	2.0	21	95	0	77	37	18	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93924946--93924993	25	1.9	25	86	0	69	27	16	25	31	1.97
93930692--93930749	28	2.1	28	96	0	107	25	32	13	27	1.94
93932778--93932816	10	3.8	10	93	6	69	30	17	17	33	1.94
93932778--93932817	21	1.9	21	100	0	80	30	17	17	35	1.93
93932857--93932907	25	2.0	25	88	0	75	27	19	23	29	1.98
93940633--93940693	19	3.4	18	73	17	65	36	24	11	27	1.90
93940622--93940694	34	2.1	34	94	0	128	35	24	12	27	1.91
93943548--93943597	23	2.0	26	81	11	61	22	26	10	42	1.84
93947756--93947840	43	2.0	43	85	0	116	28	32	18	20	1.96
93951476--93951578	29	3.6	29	90	0	152	24	33	15	27	1.95
93951447--93951578	58	2.3	58	79	0	147	24	34	15	25	1.95
93957853--93958019	40	4.2	40	82	2	185	24	26	22	26	2.00
93963481--93963611	40	3.3	41	80	5	160	25	26	22	24	2.00
93964454--93964499	17	2.5	19	74	22	53	34	23	17	23	1.96
93966054--93966260	49	4.3	48	93	1	310	30	8	31	29	1.86
93968383--93968614	40	5.8	40	90	0	338	27	21	26	25	1.99
93972502--93972755	47	5.3	48	93	1	379	31	8	31	29	1.86
93974880--93975110	40	5.8	40	91	1	347	26	21	27	25	1.99
93974890--93975110	79	2.8	80	90	1	345	25	22	27	24	2.00
93974880--93975110	119	1.9	120	88	0	347	26	21	27	25	1.99
93978998--93979202	47	4.3	47	91	1	293	31	8	31	28	1.86
93982903--93982980	39	2.0	39	100	0	156	28	7	28	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93985206--93985240	17	2.1	17	100	0	70	71	5	11	11	1.30
93995762--93995991	53	4.3	52	78	5	219	40	20	10	29	1.85
93995762--93995990	80	2.9	78	83	6	273	40	20	10	29	1.85
93995762--93995992	27	8.7	27	79	4	218	39	20	9	29	1.85
93995976--93996386	27	15.3	27	84	0	491	37	18	18	25	1.94
93995762--93995991	107	2.2	107	84	2	275	40	20	10	29	1.85
93995783--93996016	80	2.9	80	80	3	247	40	18	10	30	1.85
93996735--93996793	22	2.7	22	81	0	64	20	25	22	32	1.98
93996951--93997031	27	3.0	27	82	8	103	18	22	22	37	1.95
93997151--93997266	6	18.8	6	73	15	94	18	16	15	49	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433