genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  120  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30924814--30925218	27	15.0	27	87	2	537	35	18	21	24	1.95
30925649--30925713	22	3.0	22	82	8	78	21	23	23	32	1.98
30925872--30925973	27	3.8	27	85	5	125	17	23	22	36	1.95
30926110--30926248	31	4.5	31	84	2	163	20	16	14	48	1.81
30926137--30926206	25	2.8	24	79	10	70	21	12	15	50	1.78
30926139--30926221	6	13.5	6	72	14	53	19	15	16	48	1.82
30926993--30927025	7	4.7	7	92	0	57	18	0	36	45	1.49
30933030--30933141	27	4.2	26	84	7	125	35	24	23	16	1.95
30933030--30933141	54	2.1	54	86	3	154	35	24	23	16	1.95
30940829--30940876	24	1.9	24	83	8	60	64	10	20	4	1.41
30944607--30944645	19	2.1	19	100	0	78	20	20	15	43	1.88
30946684--30946850	27	6.3	26	83	4	199	39	21	9	29	1.85
30946724--30947038	81	3.9	81	83	7	322	36	20	16	26	1.94
30946781--30947038	27	9.6	27	90	1	333	36	21	16	25	1.94
30946835--30947083	80	3.1	80	87	2	331	35	20	19	25	1.95
30947509--30947571	22	2.9	22	79	9	74	17	23	23	34	1.96
30947732--30947833	27	3.8	27	85	5	116	19	23	20	36	1.95
30947732--30947833	54	1.9	53	83	2	132	19	23	20	36	1.95
30947970--30948120	6	24.3	6	70	18	96	19	17	15	48	1.81
30947970--30948111	31	4.5	31	90	0	194	19	17	14	48	1.81
30949753--30949796	19	2.3	19	84	0	52	11	36	0	52	1.38
30950460--30950564	41	2.6	40	79	5	95	34	20	22	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30950477--30950555	41	1.9	41	89	0	122	34	21	24	20	1.97
30950541--30950771	40	5.7	40	84	4	293	24	20	24	30	1.98
30950550--30950783	81	2.9	81	92	1	380	24	19	24	31	1.98
30951921--30951969	15	3.3	14	91	8	71	69	4	2	24	1.17
30951921--30951969	8	6.6	7	95	4	71	69	4	2	24	1.17
30951921--30951969	22	2.2	22	89	10	73	69	4	2	24	1.17
30956756--30956798	21	2.0	21	100	0	86	30	13	32	23	1.93
30958966--30959035	25	2.8	26	86	6	108	25	20	25	28	1.99
30959239--30959401	27	6.0	27	85	4	186	23	20	21	34	1.96
30959253--30959407	54	2.9	54	83	2	213	23	19	20	36	1.95
30959394--30959467	26	2.8	26	93	2	121	35	10	13	40	1.80
30959364--30959570	27	7.8	26	79	7	118	30	9	19	40	1.84
30959430--30959622	81	2.4	81	83	3	228	31	7	19	41	1.79
30959446--30959623	54	3.3	53	82	4	196	29	7	19	43	1.78
30959471--30959628	27	5.9	27	84	2	174	29	6	20	42	1.78
30959392--30959925	27	19.9	27	82	5	145	35	8	20	34	1.84
30959616--30959880	54	4.9	54	91	0	386	40	9	22	28	1.84
30959561--30959880	81	4.0	81	84	0	397	38	8	22	30	1.84
30962528--30962661	27	5.0	27	87	1	189	23	21	20	34	1.97
30962529--30962669	54	2.6	54	88	0	210	24	20	19	35	1.96
30962654--30962804	27	5.6	27	79	8	148	30	9	20	39	1.85
30962653--30962859	81	2.6	81	80	4	222	29	9	20	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30962691--30962859	27	6.3	27	83	2	187	29	10	20	39	1.85
30962824--30963036	27	7.9	27	85	1	255	37	8	24	30	1.85
30962627--30962859	54	4.3	54	77	9	165	29	11	20	39	1.87
30966540--30966586	10	4.6	10	77	15	51	40	2	0	57	1.11
30966558--30966586	5	6.0	5	92	8	51	41	0	0	58	0.98
30966529--30966579	26	2.0	25	88	3	75	43	1	0	54	1.11
30967092--30967132	3	13.3	3	84	5	55	39	0	2	58	1.11
30967092--30967147	28	2.0	28	82	6	69	39	1	1	57	1.20
30970802--30971002	99	2.0	100	91	1	323	31	11	25	31	1.91
30972450--30972515	5	13.4	5	75	15	66	42	1	0	56	1.08
30973020--30973059	3	13.0	3	84	5	53	37	0	2	60	1.11
30975668--30975821	38	4.0	38	83	3	184	33	25	20	21	1.97
30975668--30975857	76	2.5	78	81	3	204	31	25	21	22	1.98
30975669--30975841	38	4.5	38	80	7	163	31	25	21	21	1.98
30978685--30978726	18	2.3	18	84	8	50	28	11	2	57	1.47
30979843--30979928	27	3.1	28	91	5	140	37	20	24	17	1.94
30980888--30980942	25	2.3	22	76	14	56	63	0	34	1	1.05
30984139--30984196	30	1.9	30	86	6	82	22	8	3	65	1.36
30984147--30984196	20	2.5	20	80	6	57	24	8	4	64	1.38
30987653--30987694	20	2.2	19	83	12	50	26	0	0	73	0.83
30990459--30990539	26	3.1	26	82	7	101	22	19	22	35	1.96
30991759--30991939	96	1.9	97	84	1	247	29	14	23	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30991934--30991974	16	2.5	17	80	8	57	73	0	0	26	0.84
30992604--30992653	10	5.0	10	81	13	59	22	8	2	68	1.26
30994883--30994927	22	2.0	22	83	8	56	40	4	0	55	1.20
31002245--31002420	46	3.8	45	81	10	212	21	21	29	28	1.98
31002241--31002412	93	1.8	93	94	0	308	20	21	30	27	1.98
31005309--31005377	15	4.6	15	83	0	84	11	17	13	57	1.64
31005300--31005379	30	2.7	30	82	7	99	11	17	15	56	1.67
31011250--31011360	50	2.2	50	82	12	138	43	6	16	34	1.73
31020332--31020596	47	5.6	48	71	10	163	27	19	24	28	1.98
31025327--31025510	69	2.6	70	84	1	253	25	22	23	28	1.99
31027256--31027326	24	3.0	24	95	0	124	35	1	38	25	1.65
31027256--31027349	48	1.9	48	81	10	111	35	4	37	23	1.75
31028744--31028855	27	4.1	26	79	8	116	17	22	23	36	1.95
31034810--31034843	17	2.0	17	88	0	50	32	5	14	47	1.69
31039858--31039891	17	2.0	17	88	0	50	32	5	14	47	1.69
31041560--31041748	50	3.8	49	83	2	227	26	18	24	30	1.98
31045708--31045806	28	3.5	28	81	9	112	29	25	16	29	1.96
31053385--31053483	28	3.5	28	81	9	112	29	25	16	29	1.96
31056044--31056114	37	1.9	37	82	5	90	46	9	25	18	1.79
31060408--31060589	40	4.6	40	90	2	278	24	24	26	25	2.00
31062733--31062770	19	2.0	19	94	0	67	31	13	39	15	1.86
31064129--31064201	29	2.6	28	85	8	87	28	31	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31064418--31064452	8	4.4	8	88	0	52	8	20	25	45	1.79
31064415--31064447	16	2.1	16	100	0	66	6	24	27	42	1.78
31066363--31066412	24	2.0	25	88	11	77	44	6	2	48	1.39
31068134--31068223	45	2.0	45	95	0	162	23	14	17	44	1.86
31071243--31071280	14	2.9	13	81	11	51	57	10	13	18	1.63
31074371--31074422	25	2.0	26	88	3	79	36	13	9	40	1.77
31080768--31080918	19	7.8	20	67	16	93	15	34	17	32	1.91
31080766--31080977	39	5.4	39	84	0	271	16	32	17	33	1.92
31085318--31085351	17	1.9	17	88	5	50	52	0	0	47	1.00
31088551--31088592	22	1.9	22	85	9	59	21	14	38	26	1.91
31092475--31092510	17	2.1	18	94	5	65	72	0	2	25	0.98
31092625--31092663	3	13.0	3	100	0	78	66	0	0	33	0.92
31095125--31095149	13	1.9	13	100	0	50	48	4	8	40	1.51
31095631--31095758	56	2.3	56	98	0	247	38	15	10	35	1.83
31099454--31099497	24	1.9	22	86	9	61	45	15	0	38	1.47
31106107--31106132	12	2.2	12	100	0	52	61	0	30	7	1.24
31111377--31111411	18	1.9	18	88	0	52	45	11	0	42	1.40
31114072--31114111	2	20.5	2	89	5	64	47	0	2	50	1.14
31115827--31115868	2	21.0	2	100	0	84	50	0	0	50	1.00
31116235--31116274	18	2.2	18	100	0	80	25	7	17	50	1.72
31120399--31120456	29	2.0	29	83	3	73	29	3	0	67	1.07
31120424--31120502	42	1.9	42	82	12	101	35	2	2	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31120610--31120653	2	22.0	2	100	0	88	50	0	0	50	1.00
31122047--31122133	21	4.0	23	79	10	83	37	24	21	16	1.93
31122503--31122560	15	3.8	15	88	2	89	51	12	0	36	1.39
31128378--31128464	21	4.0	23	79	10	83	37	24	21	16	1.93
31133043--31133099	15	3.9	15	88	2	89	35	0	12	52	1.39
31133471--31133557	21	4.0	23	77	10	74	17	21	22	37	1.93
31133494--31133543	21	2.4	21	93	0	82	14	28	28	30	1.95
31135491--31135529	15	2.6	15	84	12	53	71	0	0	28	0.86
31137067--31137108	15	3.0	14	83	10	50	73	2	0	23	0.94
31137738--31137786	21	2.3	21	92	0	89	34	30	0	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444