Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  368  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107046187--107046229
10
4.3
10
82
11
61
20
6
2
69
1.23
107052119--107052148
9
3.3
9
100
0
60
80
0
0
20
0.72
107057520--107057592
18
4.3
18
72
19
68
19
39
23
17
1.92
107057503--107057578
31
2.5
31
97
0
143
21
38
22
18
1.94
107061124--107061184
30
2.0
30
84
6
79
27
4
24
42
1.75
107061476--107061531
28
2.0
28
100
0
112
21
10
25
42
1.85
107066503--107066590
45
2.0
45
95
0
158
34
19
18
28
1.95
107073660--107073692
5
6.8
5
93
6
59
18
0
0
81
0.68
107073653--107073694
15
2.8
16
85
10
61
21
0
2
76
0.90
107079476--107079914
178
2.5
178
88
0
646
31
17
21
29
1.96
107079752--107080047
133
2.2
133
87
3
418
30
18
21
29
1.97
107079840--107080201
178
2.0
178
87
4
525
29
18
22
29
1.97
107079572--107080203
311
2.0
311
87
1
919
29
18
22
29
1.98
107080210--107080429
44
5.0
44
69
16
168
30
22
27
19
1.98
107080180--107080429
88
2.8
88
93
0
419
30
22
25
21
1.99
107080358--107080502
73
2.0
73
97
0
272
31
24
24
19
1.98
107080451--107081033
44
13.3
44
64
12
241
32
22
23
20
1.98
107080431--107081172
88
8.5
88
87
2
1021
32
22
23
21
1.98
107080426--107081165
175
4.2
175
90
2
1024
32
22
23
21
1.98
107080435--107081165
263
2.8
261
87
3
1011
32
22
23
21
1.98
107081536--107081566
5
6.0
5
96
3
53
19
0
0
80
0.71
107081660--107081731
35
2.1
34
87
7
101
20
18
8
52
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107081997--107082091
28
3.6
24
81
13
93
46
33
4
15
1.66
107082011--107082094
28
3.0
28
91
1
132
46
30
3
19
1.66
107082135--107082164
13
2.2
14
94
5
53
36
36
3
23
1.71
107082247--107082285
17
2.3
17
90
0
60
30
23
0
46
1.53
107082245--107082292
23
2.0
24
88
4
71
33
20
0
45
1.52
107082273--107082318
16
2.8
17
77
12
51
39
23
0
36
1.55
107082292--107082339
22
2.1
22
81
11
53
39
27
0
33
1.57
107083137--107083176
21
1.9
21
84
0
53
50
5
0
45
1.23
107083564--107083597
17
2.0
17
88
11
52
61
5
0
32
1.20
107085307--107085361
20
2.7
20
75
13
58
36
25
14
23
1.93
107094102--107094126
12
2.1
12
100
0
50
44
16
0
40
1.47
107094129--107094165
2
18.5
2
100
0
74
48
0
0
51
1.00
107094480--107094519
20
2.2
18
86
13
55
22
10
5
62
1.46
107101694--107101753
26
2.4
24
83
8
75
68
3
0
28
1.05
107101724--107101782
21
2.8
22
85
7
70
69
6
0
23
1.12
107110186--107110240
27
2.0
27
96
0
101
34
12
32
20
1.90
107112090--107112129
19
2.0
20
85
4
55
57
0
0
42
0.98
107112557--107112620
31
2.1
31
88
8
96
25
4
10
59
1.50
107117806--107117934
46
2.8
46
95
0
222
30
29
20
19
1.97
107119402--107119426
2
12.5
2
100
0
50
52
0
0
48
1.00
107122716--107123133
49
8.8
49
67
11
226
25
28
20
26
1.99
107122774--107123126
141
2.5
141
93
1
591
25
28
19
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107138834--107138940
53
2.0
53
100
0
214
31
7
14
45
1.73
107144878--107144920
21
2.0
20
86
13
59
62
0
6
30
1.21
107146228--107146289
30
2.1
30
84
6
81
50
4
4
40
1.45
107148695--107148823
21
6.2
20
77
3
107
17
21
16
44
1.86
107148695--107148801
42
2.5
42
90
0
169
17
22
15
43
1.87
107164556--107164748
53
3.8
51
80
8
200
23
16
30
30
1.96
107164555--107164713
53
3.1
50
85
5
201
24
15
28
31
1.95
107164555--107164757
99
2.0
100
82
7
241
23
15
30
30
1.95
107169933--107169980
19
2.7
17
73
20
53
62
0
0
37
0.95
107169946--107169981
16
2.2
17
90
5
56
66
0
0
33
0.92
107171027--107171064
19
2.0
20
89
5
60
10
5
2
81
0.94
107171127--107171176
17
3.1
16
77
16
59
38
0
0
62
0.96
107171128--107171208
11
8.1
10
70
24
55
38
0
0
61
0.96
107171159--107171190
10
3.1
11
91
8
50
37
0
0
62
0.95
107171159--107171213
18
2.8
20
81
18
62
43
0
0
56
0.99
107171129--107171208
28
2.7
28
86
7
97
38
0
0
61
0.96
107171170--107171219
19
2.7
19
81
9
50
44
2
0
54
1.11
107171156--107171229
30
2.5
30
82
10
82
47
1
0
51
1.09
107171267--107171321
23
2.4
23
84
6
67
40
0
1
58
1.09
107173454--107173568
40
2.9
39
84
5
142
34
15
10
39
1.82
107174423--107174453
14
2.1
15
94
5
55
0
32
0
67
0.91
107174466--107174516
25
2.1
25
85
3
68
3
13
5
76
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107174686--107174716
8
3.9
8
100
0
62
61
0
0
38
0.96
107174655--107174768
49
2.3
49
79
10
119
47
2
1
48
1.26
107177228--107177516
149
1.9
149
92
0
488
29
20
17
31
1.96
107179253--107179297
19
2.4
19
84
0
63
37
8
4
48
1.55
107179559--107179619
26
2.4
25
74
12
70
77
3
3
16
1.04
107179675--107179739
13
5.2
13
74
22
59
61
0
0
38
0.96
107179666--107179718
27
1.9
28
88
3
81
60
3
0
35
1.15
107179693--107179748
22
2.5
23
85
11
80
57
0
0
42
0.99
107179802--107179850
21
2.3
21
89
3
71
57
2
0
40
1.10
107179831--107179866
14
2.5
15
90
4
56
58
0
0
41
0.98
107179831--107179867
15
2.6
14
91
4
56
56
0
0
43
0.99
107179805--107179889
37
2.4
36
86
7
111
58
1
0
40
1.05
107179845--107179889
23
2.0
23
86
8
65
55
0
0
44
0.99
107179845--107179895
23
2.2
23
82
10
59
50
1
1
45
1.24
107191926--107192057
35
3.6
38
80
9
141
34
21
9
33
1.87
107193712--107193745
15
2.4
14
85
5
50
50
20
0
29
1.49
107193775--107193835
32
1.9
32
93
0
104
50
18
0
31
1.47
107194472--107194519
25
1.9
25
91
0
78
2
25
6
66
1.26
107194583--107194617
5
7.0
5
100
0
70
60
0
0
40
0.97
107197202--107197226
5
5.0
5
100
0
50
80
0
20
0
0.72
107197154--107197276
54
2.3
53
84
5
160
65
3
26
5
1.31
107201066--107201097
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107204852--107204890
21
1.9
21
89
5
62
25
5
0
69
1.09
107209471--107209510
19
2.1
19
85
0
53
25
35
17
22
1.95
107213542--107213581
21
2.0
21
85
5
55
42
2
0
55
1.13
107216749--107216781
14
2.4
14
90
5
50
45
6
0
48
1.27
107220975--107221058
43
2.0
43
81
9
100
28
25
17
28
1.98
107227760--107227789
15
2.0
15
100
0
60
40
13
20
26
1.89
107227864--107227894
2
15.5
2
100
0
62
51
0
0
48
1.00
107236747--107236799
27
1.9
27
84
3
70
47
1
0
50
1.12
107243190--107243240
23
2.2
23
96
0
93
19
15
33
31
1.93
107249513--107249561
23
2.2
23
92
3
82
53
28
0
18
1.45
107250072--107250097
2
13.0
2
100
0
52
50
0
0
50
1.00
107252336--107252378
21
2.0
21
95
0
77
46
32
11
9
1.72
107258744--107259183
227
1.9
228
86
4
620
29
21
17
31
1.97
107272085--107272153
15
4.6
15
83
0
84
11
17
13
57
1.64
107272076--107272163
30
3.0
30
81
8
99
10
17
15
56
1.66
107278520--107278548
13
2.1
14
93
6
51
48
3
20
27
1.66
107281181--107281217
15
2.5
15
80
20
51
8
8
13
70
1.34
107281510--107281566
25
2.2
26
87
3
80
3
1
33
61
1.23
107288809--107288844
2
18.0
2
100
0
72
50
0
0
50
1.00
107288988--107289020
16
2.1
16
88
5
50
42
0
0
57
0.98
107290405--107290451
23
2.1
23
88
4
69
63
6
0
29
1.19
107291011--107291059
25
2.0
24
85
14
66
48
0
8
42
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107292156--107292186
2
16.0
2
93
6
55
51
0
0
48
1.00
107292308--107292370
19
3.4
19
80
6
67
52
4
0
42
1.22
107293626--107293682
7
8.0
7
74
18
55
29
0
3
66
1.08
107294662--107294701
16
2.4
16
91
4
62
25
0
2
72
0.97
107294671--107294734
18
3.8
16
80
17
67
28
1
6
64
1.27
107297089--107297260
93
1.8
93
93
0
299
27
30
20
20
1.98
107297081--107297256
46
3.8
46
80
10
205
28
29
20
21
1.98
107300668--107300697
4
7.2
4
96
3
51
53
23
0
23
1.46
107302190--107302232
18
2.4
18
81
11
54
4
13
6
74
1.19
107302259--107302294
5
7.2
5
100
0
72
58
0
0
41
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444