genome.fa.s10.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  198  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55350576--55350724	27	5.5	27	86	1	199	22	19	20	37	1.94
55350551--55350724	54	3.2	54	81	1	204	24	18	20	36	1.95
55356112--55356210	28	3.5	28	81	9	112	29	25	16	29	1.96
55363783--55363881	28	3.5	28	81	9	112	29	25	16	29	1.96
55368660--55368829	27	6.3	27	84	2	225	24	21	18	35	1.96
55371569--55371665	40	2.4	41	84	6	128	28	29	15	25	1.96
55378221--55378328	28	3.9	28	80	8	121	29	31	12	25	1.93
55378224--55378333	56	2.0	56	89	3	168	29	30	12	27	1.93
55379650--55379822	46	3.7	46	79	10	199	22	20	27	29	1.99
55379647--55379817	93	1.8	93	92	0	288	22	21	28	28	1.99
55385940--55386163	40	5.7	40	86	7	325	26	27	21	24	1.99
55385940--55386163	117	1.9	118	88	6	339	26	27	21	24	1.99
55385917--55386156	78	3.1	76	86	8	324	26	27	21	24	1.99
55391979--55392012	18	1.9	18	88	5	52	20	38	23	17	1.93
55393379--55393410	16	2.0	16	100	0	64	12	6	31	50	1.65
55395068--55395098	16	1.9	16	93	0	53	51	25	6	16	1.68
55396635--55396716	29	2.9	29	89	5	114	26	17	28	28	1.97
55407898--55408142	49	4.9	49	82	3	310	26	17	26	28	1.98
55408002--55408085	28	3.2	28	64	25	74	25	16	29	28	1.97
55411573--55411678	28	3.8	28	85	3	133	25	31	15	28	1.95
55411573--55411680	56	1.9	56	86	3	155	25	30	14	28	1.95
55415142--55415241	40	2.5	40	83	4	132	29	28	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55416947--55417065	29	4.1	29	91	1	186	30	30	14	25	1.95
55417121--55417164	17	2.6	17	100	0	88	15	47	25	11	1.79
55420265--55420640	47	8.0	47	90	2	549	33	11	29	25	1.92
55420476--55420550	22	3.3	22	66	23	64	32	13	29	25	1.93
55420290--55420640	189	1.9	188	90	3	562	33	12	29	24	1.92
55420620--55420750	46	2.8	46	88	0	190	36	9	30	23	1.86
55426205--55426253	17	2.8	18	74	22	50	24	18	22	34	1.96
55427076--55427242	40	4.2	40	79	6	169	25	21	27	25	1.99
55438461--55438509	17	2.8	18	74	22	50	24	18	22	34	1.96
55439330--55439496	40	4.2	40	79	6	169	25	21	27	25	1.99
55441589--55441800	42	5.0	42	79	7	212	25	17	24	32	1.97
55441599--55441800	85	2.4	86	78	4	221	26	18	23	31	1.97
55442471--55442515	23	2.0	22	95	4	81	11	8	26	53	1.65
55444217--55444513	40	7.5	40	90	2	422	25	28	22	22	1.99
55460361--55460425	32	2.0	32	96	0	121	32	9	9	49	1.66
55470597--55470633	19	2.0	19	94	5	67	67	0	0	32	0.91
55470916--55470994	35	2.2	37	86	13	121	36	15	10	37	1.81
55470937--55470992	17	3.5	15	88	9	60	35	16	10	37	1.83
55470923--55470994	19	3.9	19	89	10	123	36	15	11	37	1.83
55474275--55474792	55	9.9	54	73	10	365	23	23	16	35	1.95
55474573--55474845	47	5.5	47	68	17	185	25	21	15	37	1.93
55474298--55474845	101	5.3	101	88	4	611	24	23	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55474286--55474798	54	9.8	53	71	12	283	23	23	16	36	1.94
55492280--55492317	20	1.9	20	88	0	58	34	2	10	52	1.50
55493946--55494014	28	2.5	28	95	2	122	43	27	10	18	1.82
55496544--55496579	15	2.4	15	85	0	54	44	5	5	44	1.50
55501499--55501536	20	1.9	20	88	0	58	34	2	10	52	1.50
55503164--55503232	28	2.5	28	95	2	122	43	27	10	18	1.82
55505699--55505962	40	6.6	41	88	5	337	25	22	27	25	2.00
55505699--55505998	120	2.5	119	83	7	344	24	22	27	25	2.00
55513682--55513853	43	4.0	43	74	8	127	33	24	15	26	1.95
55521084--55521134	23	2.3	22	83	6	59	45	15	5	33	1.71
55524369--55524425	24	2.4	24	80	8	62	5	17	3	73	1.16
55527574--55527616	21	2.0	21	95	0	77	37	9	9	44	1.69
55530603--55530810	40	5.2	40	82	2	202	25	23	25	25	2.00
55530605--55530810	80	2.6	80	83	3	236	25	23	26	24	2.00
55538600--55538806	40	5.2	40	80	5	204	25	23	26	25	2.00
55542585--55542791	40	5.2	40	85	2	222	25	28	22	24	2.00
55543617--55543662	17	2.5	19	74	22	53	34	23	17	23	1.96
55546135--55546307	46	3.7	46	79	10	208	21	20	27	29	1.98
55546132--55546302	93	1.8	93	93	0	297	21	21	28	28	1.98
55553674--55553846	46	3.7	46	79	10	208	21	20	27	29	1.98
55553671--55553841	93	1.8	93	93	0	297	21	21	28	28	1.98
55554070--55554107	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55560702--55560770	9	7.4	9	73	4	57	52	20	2	24	1.60
55560702--55560765	18	3.4	18	80	4	65	51	20	1	26	1.56
55564930--55564998	9	7.4	9	80	4	75	53	21	2	21	1.59
55565059--55565124	34	1.9	34	84	0	87	40	16	7	34	1.77
55568613--55568735	43	2.9	44	75	3	126	32	23	15	28	1.95
55573508--55573610	50	2.1	50	90	7	165	28	18	28	25	1.98
55576481--55576617	43	3.2	43	84	4	145	21	27	21	29	1.99
55576506--55576632	43	3.0	41	87	4	164	21	29	22	25	1.99
55583005--55583196	40	4.8	40	81	2	190	23	25	23	27	2.00
55586075--55586198	43	2.9	43	87	3	171	23	28	21	26	1.99
55587904--55587933	15	2.1	15	93	6	53	36	26	6	30	1.82
55588361--55588446	28	3.0	29	84	3	104	26	27	15	30	1.96
55588657--55588719	8	7.9	8	76	0	63	7	23	26	41	1.82
55589434--55589475	22	1.9	22	95	0	75	26	21	14	38	1.91
55593721--55593806	27	3.2	27	84	0	100	27	20	10	40	1.85
55593840--55593962	27	4.6	27	84	5	151	44	22	5	26	1.75
55594078--55594139	27	2.3	27	83	5	81	38	19	22	19	1.93
55594955--55595024	25	2.8	24	91	4	104	24	25	25	24	2.00
55594954--55595037	25	3.4	24	83	8	98	27	22	25	25	2.00
55595172--55595263	42	2.2	42	92	0	148	30	13	21	34	1.91
55595287--55595427	31	4.5	31	96	0	255	27	17	26	28	1.98
55595290--55595461	93	1.9	93	85	8	228	26	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55599573--55599659	28	3.1	28	83	3	111	29	26	16	27	1.96
55599573--55599644	29	2.5	28	88	2	99	29	26	18	26	1.98
55599867--55599910	8	5.5	8	86	0	61	11	22	20	45	1.83
55606505--55606578	29	2.6	29	80	4	87	27	16	29	27	1.97
55610164--55610541	47	8.0	48	94	2	617	28	21	22	27	1.99
55610164--55610541	71	5.3	71	93	2	620	28	21	22	27	1.99
55610164--55610541	118	3.2	118	96	1	679	28	21	22	27	1.99
55610599--55610655	9	5.9	9	73	15	51	35	21	8	35	1.84
55610587--55610657	20	3.5	20	94	0	124	32	21	11	35	1.89
55610592--55610646	11	5.4	11	70	16	55	30	20	12	36	1.90
55610694--55610741	25	1.9	25	82	0	60	25	14	25	35	1.94
55611983--55612322	27	12.6	27	86	2	432	39	9	23	27	1.85
55618046--55618154	37	2.9	37	88	0	155	22	18	31	28	1.97
55619423--55619654	40	5.8	40	86	2	295	25	20	26	26	1.99
55623843--55623968	47	2.7	47	89	0	189	34	12	27	25	1.92
55624171--55624279	37	2.9	37	95	0	191	22	19	30	27	1.98
55638391--55638508	41	3.1	41	60	28	98	32	17	28	21	1.96
55638359--55638522	71	2.3	71	100	0	328	35	17	28	18	1.94
55645125--55645332	40	5.2	40	82	2	202	25	23	25	25	2.00
55645127--55645332	80	2.6	80	83	3	236	25	23	26	24	2.00
55649268--55649434	40	4.2	40	82	2	185	25	27	21	25	1.99
55649268--55649434	80	2.1	79	83	7	205	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55650260--55650305	17	2.5	19	74	22	53	34	23	17	23	1.96
55657254--55657419	40	4.2	40	81	3	176	24	27	21	25	1.99
55657270--55657381	39	2.8	38	85	4	134	25	29	22	23	1.99
55657270--55657419	79	1.9	78	83	6	196	24	28	22	26	1.99
55658245--55658290	17	2.5	19	74	22	53	34	23	17	23	1.96
55660203--55660231	14	2.1	14	100	0	58	27	24	13	34	1.93
55664432--55664614	24	7.6	24	97	0	312	36	25	18	20	1.95
55664410--55664614	48	4.3	47	91	3	284	35	24	18	22	1.96
55672706--55672770	32	2.0	32	93	0	112	52	10	13	23	1.72
55674646--55674678	16	2.2	15	89	10	50	48	6	15	30	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444