genome.fa.s10.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  172  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47526114--47526198	37	2.3	37	87	4	118	18	17	11	51	1.75
47541807--47541885	39	2.0	39	97	0	149	30	24	5	40	1.76
47554960--47554993	16	2.1	17	88	5	52	38	23	2	35	1.70
47555310--47555363	24	2.2	24	93	0	90	18	24	33	24	1.97
47555765--47555854	45	2.0	45	100	0	180	42	15	6	35	1.73
47572242--47572275	18	1.9	18	94	5	61	55	5	11	26	1.58
47572985--47573042	10	5.8	10	88	8	82	67	1	8	22	1.27
47572985--47573054	30	2.3	30	85	4	97	67	2	7	22	1.29
47572985--47573054	20	3.5	20	86	3	88	67	2	7	22	1.29
47574187--47574263	29	2.7	29	85	0	109	19	15	29	35	1.93
47585167--47585211	23	2.0	23	95	0	81	24	31	15	28	1.96
47590409--47590531	26	4.7	27	76	10	112	28	25	15	30	1.96
47594912--47595045	51	2.9	45	78	13	155	23	19	29	28	1.98
47598700--47598804	40	2.6	40	87	3	149	24	22	28	23	1.99
47606499--47606603	40	2.6	40	87	3	149	24	22	28	23	1.99
47606542--47606650	40	2.7	40	86	0	137	26	23	29	20	1.99
47608707--47608933	40	5.7	40	90	3	332	25	29	21	23	1.99
47608689--47608928	120	2.0	120	90	3	376	27	28	20	22	1.99
47616847--47617070	40	5.7	40	89	4	314	25	29	21	23	1.99
47616827--47617070	79	3.1	78	87	5	325	26	28	21	23	1.99
47620696--47620737	22	1.9	22	85	0	57	28	0	4	66	1.12
47620857--47620929	29	2.6	29	75	14	71	68	1	4	26	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47629307--47629341	17	2.1	17	88	0	52	20	8	14	57	1.63
47634502--47634583	20	4.1	19	76	12	67	36	1	6	56	1.32
47634717--47634772	23	2.4	23	79	8	60	37	8	10	42	1.71
47637399--47637463	16	3.6	17	70	25	53	61	0	3	35	1.12
47637398--47637457	5	13.0	5	74	22	60	60	0	3	36	1.14
47637801--47637871	3	23.3	3	71	8	54	61	7	1	29	1.30
47638735--47638786	22	2.4	22	90	3	79	11	3	55	28	1.53
47639736--47639780	21	2.1	21	100	0	90	44	13	24	17	1.85
47642252--47642309	15	4.1	14	77	18	50	65	5	0	29	1.14
47642252--47642303	27	1.9	27	84	0	68	67	3	0	28	1.08
47648675--47648735	21	3.0	20	71	22	54	44	0	0	55	0.99
47649437--47649506	5	14.0	5	71	16	56	55	1	1	41	1.17
47649441--47649490	19	2.6	19	83	3	64	58	2	2	38	1.21
47649437--47649474	11	3.0	13	88	11	53	55	0	2	42	1.14
47657268--47657376	9	12.2	9	86	1	148	28	0	26	44	1.54
47660259--47660322	31	2.1	31	100	0	128	34	6	28	31	1.82
47660875--47660925	19	2.6	20	81	6	68	37	0	37	25	1.56
47661143--47661435	73	4.0	74	72	10	206	35	18	17	28	1.94
47661143--47661435	148	2.0	148	84	2	383	35	18	17	28	1.94
47661198--47661435	73	3.2	73	75	6	228	34	19	17	28	1.94
47661948--47661995	15	3.1	15	78	3	60	20	0	33	45	1.52
47663689--47663756	27	2.5	28	95	2	120	29	13	26	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47663689--47663770	27	3.0	27	84	8	69	29	14	24	31	1.95
47665263--47665328	14	4.7	14	72	7	53	21	3	30	45	1.67
47665263--47665328	21	3.1	21	73	16	64	21	3	30	45	1.67
47669934--47669979	21	2.0	23	88	12	69	30	8	0	60	1.26
47670578--47670780	48	4.3	48	76	13	204	28	18	24	28	1.98
47670578--47670803	48	4.8	47	75	12	185	29	18	23	28	1.98
47677361--47677541	27	6.7	27	87	3	197	40	22	9	26	1.85
47677412--47677853	81	5.5	81	80	3	426	37	18	17	26	1.93
47677470--47677861	27	14.6	27	82	1	455	37	18	18	25	1.94
47677470--47677861	54	7.3	54	88	0	525	37	18	18	25	1.94
47678170--47678210	20	2.0	20	85	0	55	14	17	29	39	1.89
47678227--47678285	22	2.7	22	81	0	64	22	25	22	30	1.99
47678443--47678578	27	5.0	27	77	12	127	16	23	22	37	1.94
47678458--47678578	55	2.2	53	85	7	154	18	23	20	38	1.94
47678695--47678825	6	21.3	6	69	16	72	19	16	13	50	1.78
47678699--47678759	25	2.4	26	81	8	72	18	18	14	49	1.80
47680803--47680954	27	5.6	27	86	5	182	44	22	6	26	1.77
47680798--47680896	9	11.1	9	65	13	53	47	23	5	24	1.71
47680939--47681170	27	8.6	27	83	2	279	35	18	19	25	1.95
47680908--47681170	54	4.9	53	83	4	276	36	19	18	25	1.94
47680912--47681170	81	3.2	79	78	6	261	36	19	18	25	1.94
47681732--47681867	27	5.0	26	82	6	155	19	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47681732--47681867	55	2.5	54	82	7	168	19	22	21	36	1.95
47681985--47682115	6	21.3	6	69	16	81	19	17	13	49	1.79
47681988--47682049	25	2.5	25	86	0	88	19	20	12	46	1.83
47682007--47682094	37	2.4	36	79	7	104	19	18	13	48	1.80
47682020--47682083	19	3.4	19	72	12	60	18	17	15	48	1.81
47686220--47686434	48	4.5	48	81	4	238	26	26	18	27	1.98
47686234--47686441	96	2.2	96	84	6	271	27	24	19	28	1.98
47686566--47686595	6	5.0	6	100	0	60	50	16	0	33	1.46
47693406--47693446	19	2.2	19	100	0	82	46	26	9	17	1.79
47720080--47720194	43	2.7	42	81	4	140	31	16	25	26	1.96
47730306--47730441	26	5.2	26	93	0	227	33	5	24	36	1.78
47732061--47732202	27	5.3	27	89	4	198	16	23	22	36	1.94
47737675--47737744	27	2.5	28	95	2	124	28	14	27	30	1.95
47737675--47737756	27	3.0	27	85	8	78	29	15	24	30	1.96
47739476--47739593	27	4.4	27	84	5	141	44	17	13	24	1.85
47739476--47739593	54	2.2	54	89	4	177	44	17	13	24	1.85
47749128--47749195	30	2.3	30	92	0	109	20	26	33	19	1.96
47751442--47751709	39	7.0	39	88	4	395	23	29	23	24	1.99
47756877--47757047	93	1.8	93	87	2	254	29	26	19	23	1.99
47756872--47757044	46	3.7	46	75	11	165	30	26	19	24	1.98
47756922--47757063	46	3.1	44	73	18	112	28	27	19	24	1.98
47760833--47760913	40	2.0	41	81	11	96	24	19	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47761597--47761720	42	2.9	43	80	6	144	33	23	15	27	1.95
47764894--47764966	20	3.7	20	83	0	92	34	27	24	13	1.93
47768672--47768879	40	5.2	40	88	0	301	28	25	22	23	1.99
47776821--47777033	39	5.5	40	91	5	330	25	28	23	23	2.00
47781353--47781450	28	3.5	28	84	4	108	29	16	24	29	1.96
47789032--47789129	28	3.5	28	84	4	108	29	16	24	29	1.96
47796328--47796361	18	1.9	18	88	5	52	11	20	44	23	1.84
47796573--47796773	27	7.4	27	78	1	206	38	19	12	28	1.88
47796766--47796911	27	5.4	26	80	6	157	32	19	23	25	1.97
47796766--47796911	54	2.7	54	83	0	175	32	19	23	25	1.97
47797057--47797137	27	3.0	26	75	8	74	23	19	17	39	1.92
47797139--47797238	26	3.8	26	94	0	164	20	18	20	42	1.90
47797377--47797477	33	3.0	33	83	1	130	24	20	25	28	1.99
47802624--47802657	3	11.0	3	93	6	59	64	0	0	35	0.94
47802792--47802831	2	20.0	2	100	0	80	50	0	0	50	1.00
47805695--47805865	93	1.8	93	87	0	252	21	19	29	29	1.97
47812765--47812802	14	2.7	15	84	12	53	44	15	0	39	1.47
47819404--47819449	20	2.4	18	82	13	56	28	26	10	34	1.90
47821966--47821991	4	6.5	4	100	0	52	23	0	0	76	0.78
47823379--47823448	31	2.3	31	87	2	97	55	1	1	41	1.17
47823363--47823406	19	2.3	19	80	7	54	54	2	0	43	1.12
47823368--47823413	21	2.0	21	84	12	56	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47838891--47838933	22	2.0	23	86	9	63	37	0	2	60	1.10
47838985--47839057	26	2.8	26	87	6	87	64	5	1	28	1.24
47838985--47839043	26	2.3	26	93	0	100	64	5	1	28	1.24
47839884--47839909	2	13.0	2	100	0	52	50	0	0	50	1.00
47845761--47845874	27	4.2	27	83	0	138	21	22	29	26	1.99
47845936--47845985	24	2.1	24	96	0	91	48	20	18	14	1.82
47851486--47851604	60	2.0	60	88	3	177	54	12	0	32	1.38
47851769--47851806	18	2.1	18	85	9	51	2	23	0	73	0.95
47852718--47853007	43	6.8	43	91	3	453	23	18	32	24	1.97
47853083--47853162	31	2.5	31	81	2	88	61	18	3	16	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444