genome.fa.s10.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  153  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41508589--41508637	24	2.0	24	100	0	98	53	0	4	42	1.20
41509086--41509147	22	3.0	22	75	18	60	69	4	0	25	1.08
41509267--41509302	8	4.4	8	89	6	54	86	0	0	13	0.58
41509267--41509296	9	3.4	9	95	4	53	90	0	0	10	0.47
41509267--41509302	17	2.1	17	94	0	63	86	0	0	13	0.58
41512516--41512577	20	3.0	20	71	21	56	58	3	0	38	1.15
41512580--41512780	43	4.7	43	82	1	215	25	15	25	32	1.96
41512580--41512780	85	2.3	86	85	1	269	25	15	25	32	1.96
41514707--41514758	20	2.6	19	85	14	70	46	9	11	32	1.73
41516943--41517110	40	4.2	41	78	5	175	25	22	27	25	2.00
41516945--41517103	80	2.0	80	82	4	196	25	20	27	26	1.99
41520220--41520290	20	3.5	20	77	9	72	42	16	4	36	1.68
41523640--41523735	21	4.5	21	89	2	129	36	27	22	13	1.92
41523640--41523745	42	2.5	43	84	3	142	35	26	22	15	1.93
41525252--41525306	29	1.9	28	82	10	67	3	18	5	72	1.18
41525251--41525297	22	2.1	23	88	4	69	4	21	4	70	1.22
41525261--41525310	12	4.2	12	80	15	50	6	18	4	72	1.22
41526982--41527029	24	2.0	24	100	0	96	29	12	4	54	1.56
41528272--41528323	20	2.6	20	90	6	79	46	9	9	34	1.69
41529647--41529690	19	2.4	19	84	3	54	43	2	4	50	1.35
41532326--41532456	63	2.1	62	98	1	253	32	6	19	42	1.75
41536310--41536359	20	2.5	20	93	3	84	56	2	0	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41536310--41536367	20	3.1	19	90	5	73	55	1	0	43	1.10
41548589--41548676	35	2.5	35	80	5	106	34	23	20	21	1.97
41550246--41550282	19	1.9	19	94	0	65	48	10	13	27	1.75
41550238--41550292	17	3.1	17	80	10	65	49	12	12	25	1.76
41558551--41558599	22	2.2	22	89	10	82	26	4	2	67	1.19
41561615--41561655	22	1.9	21	85	5	55	12	41	26	19	1.87
41563196--41563233	19	2.0	19	100	0	76	57	10	5	26	1.53
41565359--41565540	39	4.6	39	87	2	240	24	22	30	23	1.99
41573330--41573512	39	4.6	39	87	0	240	24	22	30	22	1.99
41586583--41586721	60	2.3	60	76	7	138	11	28	19	40	1.86
41588924--41588997	37	2.0	37	94	0	130	24	29	24	21	1.99
41588978--41589343	49	7.7	49	75	9	219	25	29	17	27	1.98
41588978--41589162	98	1.9	97	86	3	264	25	29	17	27	1.97
41593179--41593205	14	1.9	14	100	0	54	14	3	0	81	0.82
41603482--41603528	24	2.0	24	91	0	76	29	8	21	40	1.83
41604908--41604972	32	2.1	32	85	5	89	36	15	15	32	1.89
41607113--41607138	3	8.7	3	100	0	52	0	0	34	65	0.93
41610490--41610575	40	2.2	39	85	6	120	36	36	13	13	1.85
41610500--41610576	40	1.9	40	91	0	127	36	35	14	14	1.86
41617599--41617684	40	2.2	39	80	10	95	37	36	12	13	1.84
41619177--41619658	140	3.5	140	87	1	709	51	12	13	22	1.75
41628376--41628537	39	4.2	39	77	5	166	25	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41628374--41628537	78	2.1	78	81	4	188	25	21	26	26	1.99
41635154--41635178	13	1.9	13	100	0	50	84	0	16	0	0.63
41644950--41644983	3	11.3	3	100	0	68	67	0	0	32	0.91
41645566--41645619	25	2.2	25	83	6	65	66	0	5	27	1.13
41645790--41645816	13	2.1	13	100	0	54	51	14	33	0	1.43
41646233--41646257	13	1.9	13	100	0	50	8	56	32	4	1.47
41647383--41647413	10	3.1	10	95	0	53	41	0	19	38	1.51
41647977--41648024	16	3.1	15	76	8	51	29	6	20	43	1.76
41653158--41653341	40	4.6	40	85	6	239	26	21	27	25	2.00
41656093--41656284	40	4.8	40	78	6	176	26	28	21	24	1.99
41661120--41661302	39	4.6	39	86	0	231	24	22	30	22	1.99
41663054--41663112	30	2.0	30	86	0	82	27	30	22	20	1.98
41663918--41664029	42	2.7	42	84	5	147	28	23	16	31	1.96
41684668--41684803	29	4.7	29	84	3	148	24	30	15	30	1.95
41684643--41684802	58	2.8	58	79	0	167	23	32	15	28	1.95
41685447--41685740	142	2.1	141	97	1	554	39	29	10	21	1.86
41698992--41699051	21	2.7	23	73	19	65	38	8	11	41	1.72
41699145--41699177	14	2.3	15	89	5	50	48	3	6	42	1.43
41699293--41699318	2	13.0	2	100	0	52	50	0	0	50	1.00
41701347--41701376	2	15.0	2	100	0	60	50	0	0	50	1.00
41703622--41703805	40	4.6	40	78	4	147	22	24	29	23	1.99
41711731--41711914	40	4.6	40	78	4	147	22	24	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41718785--41718869	40	2.2	39	86	2	116	23	15	30	30	1.95
41721547--41721724	97	1.9	94	82	6	225	28	14	31	25	1.95
41721594--41721724	49	2.7	47	82	7	156	27	15	32	24	1.95
41721594--41721855	97	2.8	95	76	13	226	27	15	29	27	1.96
41721695--41721855	43	3.7	43	76	7	146	26	15	27	30	1.96
41721695--41721860	86	1.9	87	84	8	221	26	15	27	31	1.95
41725755--41725839	40	2.2	39	89	2	125	24	17	27	30	1.97
41732001--41732218	79	2.7	79	78	10	205	26	27	20	25	1.99
41732015--41732218	40	5.1	40	81	8	229	26	28	20	24	1.99
41740071--41740254	40	4.7	40	84	7	234	26	28	21	23	1.99
41740073--41740254	79	2.3	79	84	6	235	25	28	21	24	1.99
41740071--41740254	39	4.7	40	83	8	225	26	28	21	23	1.99
41751937--41751965	14	2.1	14	100	0	58	44	20	13	20	1.85
41755207--41755370	71	2.3	71	98	0	319	34	18	28	18	1.95
41765536--41765744	40	5.2	41	90	4	295	28	26	21	23	1.99
41777738--41777915	50	3.5	50	79	3	187	33	25	14	26	1.94
41777707--41777917	100	2.1	100	84	4	264	34	25	14	26	1.94
41779189--41779248	29	2.1	29	100	0	120	41	15	16	26	1.88
41780548--41780576	14	2.1	14	100	0	58	51	13	0	34	1.42
41782030--41782069	21	1.9	21	94	0	71	15	40	27	17	1.89
41782030--41782077	21	2.3	21	88	0	69	16	39	27	16	1.90
41783400--41783429	16	1.9	15	93	6	51	33	23	0	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41783625--41783768	50	2.8	51	84	2	173	33	26	13	26	1.94
41783637--41783770	52	2.6	50	83	2	160	34	26	13	26	1.93
41786956--41787118	71	2.3	71	97	1	310	19	28	17	34	1.95
41786956--41787152	71	2.8	70	89	4	249	20	28	17	32	1.95
41821880--41822006	40	3.2	40	77	1	139	25	22	26	25	2.00
41829913--41830080	40	4.2	40	80	3	196	25	22	27	25	2.00
41838277--41838313	18	2.0	19	89	5	58	43	0	0	56	0.99
41838275--41838316	18	2.4	17	84	11	57	38	0	0	61	0.96
41844109--41844133	3	8.3	3	100	0	50	68	0	0	32	0.90
41844367--41844394	6	4.7	6	100	0	56	64	0	0	35	0.94
41846861--41846890	11	2.6	12	89	10	53	66	6	0	26	1.16
41846883--41846927	18	2.5	19	82	10	58	60	0	8	31	1.28
41850280--41850384	49	2.1	49	94	0	183	18	37	21	22	1.94
41852048--41852112	29	2.2	31	78	10	73	38	9	15	36	1.79
41853194--41853233	21	1.9	21	84	0	53	17	12	15	55	1.70
41853569--41853745	63	2.8	62	79	3	201	29	18	25	25	1.98
41854124--41854208	42	2.0	42	93	4	145	28	8	18	44	1.78
41857528--41857583	15	3.9	14	79	13	53	73	0	21	5	1.03
41860705--41860776	32	2.2	32	87	0	99	52	2	1	43	1.24
41864373--41864564	87	2.2	87	83	0	231	30	21	14	33	1.93
41865452--41865545	46	2.0	46	95	0	170	35	5	25	34	1.79
41867009--41867079	5	13.8	5	76	5	61	42	19	1	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870402--41870698	47	6.4	47	78	8	241	30	18	26	23	1.98
41870402--41870711	140	2.2	140	81	6	342	30	18	26	23	1.98
41870392--41870698	94	3.3	93	74	11	277	30	18	27	24	1.98
41874714--41874781	34	2.0	34	85	0	91	33	23	23	19	1.97
41879509--41879542	17	2.0	17	94	0	59	44	35	5	14	1.70
41883597--41883654	23	2.5	23	85	2	80	53	13	27	5	1.61
41884341--41884378	17	2.2	17	100	0	76	23	5	0	71	1.07
41887186--41887214	13	2.1	14	93	6	51	51	0	6	41	1.28
41888922--41888968	23	2.0	23	100	0	94	29	8	8	53	1.61
41892145--41892178	6	5.7	6	92	0	59	38	0	44	17	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444