genome.fa.s10.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  188  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52678127--52678324	71	2.8	70	91	3	258	20	28	17	33	1.95
52696020--52696131	39	2.9	37	80	10	134	30	24	20	25	1.99
52698271--52698329	29	2.0	29	100	0	118	42	16	13	27	1.86
52702554--52702659	32	3.3	32	98	0	203	19	50	16	13	1.78
52705850--52706094	49	4.9	49	81	4	285	27	26	18	26	1.98
52708351--52708389	15	2.5	15	91	4	60	56	15	12	15	1.68
52711118--52711362	49	4.9	50	83	4	307	28	27	18	25	1.98
52716377--52716406	2	15.0	2	100	0	60	50	0	0	50	1.00
52717168--52717231	32	2.0	32	100	0	128	28	28	25	18	1.98
52717200--52717326	40	3.2	40	88	0	182	26	23	25	23	2.00
52717200--52717352	80	1.9	80	80	0	180	26	24	25	23	2.00
52725195--52725413	40	5.4	40	86	2	260	26	22	26	25	2.00
52725195--52725413	120	1.8	121	86	3	316	26	22	26	25	2.00
52725276--52725439	80	2.0	80	80	2	177	26	23	26	24	2.00
52726910--52726958	17	2.8	18	74	22	50	24	18	22	34	1.96
52727781--52727947	40	4.2	40	79	6	169	25	21	27	25	1.99
52734910--52734958	17	2.8	18	74	22	50	24	18	22	34	1.96
52735780--52735945	40	4.2	39	77	9	158	25	21	27	24	1.99
52738876--52738943	27	2.5	28	90	4	104	42	26	10	20	1.84
52741966--52742055	27	3.3	27	85	3	119	40	17	10	32	1.83
52741966--52742072	54	2.0	54	81	7	128	38	20	10	30	1.86
52742061--52742378	27	11.8	27	85	0	323	28	21	8	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52742061--52742378	81	3.9	81	89	1	424	28	21	8	41	1.83
52742357--52742442	27	3.2	27	86	6	86	41	24	5	27	1.78
52742061--52742378	54	5.9	54	90	0	449	28	21	8	41	1.83
52742371--52742497	54	2.4	53	79	11	141	43	19	9	27	1.82
52742371--52742469	27	3.7	27	87	5	121	45	20	7	27	1.76
52742396--52742515	27	4.4	27	83	4	109	40	18	13	27	1.88
52743130--52743198	28	2.5	28	92	2	113	43	26	10	20	1.83
52746211--52746314	27	3.9	26	85	2	109	39	16	9	34	1.81
52746226--52746314	27	3.3	27	87	1	126	40	16	10	32	1.82
52746320--52746638	27	11.8	27	86	0	332	28	21	8	41	1.83
52746221--52746340	54	2.2	53	77	5	125	39	19	10	31	1.84
52746266--52746556	81	3.6	81	84	0	188	29	22	9	38	1.85
52746320--52746637	81	3.9	81	89	0	429	28	21	8	41	1.83
52746617--52746702	27	3.2	27	86	6	86	41	24	5	27	1.78
52746320--52746638	54	5.9	54	90	0	449	28	21	8	41	1.83
52746631--52746757	54	2.4	53	79	11	141	43	19	9	27	1.82
52746631--52746729	27	3.7	27	87	5	121	45	20	7	27	1.76
52746656--52746775	27	4.4	27	83	4	109	40	18	13	27	1.88
52747393--52747461	28	2.5	28	92	2	113	43	26	10	20	1.83
52749620--52749665	11	4.5	11	78	13	53	32	19	13	34	1.90
52754688--52754741	27	2.0	27	85	0	72	38	7	14	38	1.75
52754974--52755098	50	2.5	50	81	3	137	27	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52759137--52759252	42	2.8	42	88	3	146	18	17	26	37	1.93
52761567--52761755	55	3.5	53	84	5	236	20	25	19	34	1.96
52761953--52762038	44	2.0	43	81	6	102	25	22	12	39	1.89
52764397--52764506	40	2.7	41	86	8	138	20	30	26	22	1.99
52781743--52781780	17	2.2	17	100	0	76	36	15	5	42	1.70
52782723--52782780	25	2.4	25	81	16	77	27	20	20	31	1.98
52782736--52782825	25	3.6	24	82	4	99	28	20	25	25	1.99
52783033--52783278	27	9.4	27	80	10	181	24	20	19	35	1.95
52783037--52783274	54	4.6	54	84	9	280	24	21	18	35	1.95
52783087--52783128	19	2.2	19	91	0	66	23	21	23	30	1.99
52783107--52783274	81	2.1	81	93	2	284	25	19	18	36	1.94
52783259--52783344	27	3.2	27	75	3	84	29	9	22	39	1.85
52783323--52783693	27	13.7	27	88	0	517	40	8	22	28	1.83
52786435--52786536	25	4.2	25	87	2	129	28	21	21	28	1.99
52786435--52786537	50	2.1	47	85	7	143	29	21	21	28	1.98
52786846--52786888	18	2.4	18	100	0	86	27	34	20	16	1.94
52787348--52787425	27	3.0	27	78	10	74	24	21	19	34	1.96
52787481--52787532	27	1.9	27	88	7	79	34	11	13	40	1.81
52787550--52787785	27	9.0	28	76	11	130	29	9	19	41	1.83
52787573--52787675	54	1.9	54	88	4	154	31	9	18	40	1.83
52787737--52787913	27	6.6	27	88	1	185	40	7	21	30	1.80
52787736--52787946	54	3.9	53	75	6	183	38	7	23	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52787736--52787946	80	2.6	81	78	2	219	38	7	23	30	1.82
52790177--52790258	29	2.8	29	78	10	94	24	23	21	30	1.99
52790463--52790569	24	4.4	24	81	4	117	28	22	22	27	1.99
52790463--52790569	49	2.2	47	83	6	133	28	22	22	27	1.99
52790878--52790917	18	2.2	18	90	0	62	30	27	25	17	1.97
52791512--52791564	26	2.0	26	89	7	81	35	11	11	41	1.77
52791584--52791704	27	4.5	27	80	6	138	30	8	19	41	1.81
52791600--52791801	27	7.7	27	77	8	161	29	9	20	41	1.83
52791758--52791815	27	2.1	27	93	0	98	27	5	25	41	1.76
52791767--52791948	27	6.8	27	88	1	188	40	7	22	30	1.81
52791766--52791974	54	3.9	53	76	5	197	38	7	23	31	1.82
52794486--52794567	24	3.4	23	83	8	85	31	21	18	28	1.97
52794499--52794592	25	3.8	25	85	1	127	29	22	22	25	1.99
52794902--52794944	18	2.4	18	96	0	77	27	34	23	13	1.93
52795537--52795589	26	2.0	26	89	7	81	35	11	11	41	1.77
52795626--52795825	27	7.7	26	77	9	185	29	9	20	41	1.83
52795782--52795839	27	2.1	27	93	0	98	27	5	25	41	1.76
52795791--52795972	27	6.8	27	88	1	188	40	7	22	30	1.81
52795790--52795999	54	3.9	53	77	5	190	38	7	23	30	1.82
52798503--52798610	25	4.4	24	84	4	128	28	22	21	27	1.99
52798503--52798610	50	2.2	47	85	8	144	28	22	21	27	1.99
52798916--52798958	18	2.4	18	96	0	77	27	32	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52799549--52799601	27	2.0	27	88	7	81	33	11	11	43	1.76
52799622--52799838	27	8.3	27	73	10	139	29	9	19	41	1.82
52799640--52799745	54	2.0	54	88	3	160	31	10	18	39	1.85
52799795--52799852	28	2.2	26	87	6	80	27	5	25	41	1.76
52799767--52799879	27	4.2	27	78	8	88	30	7	23	38	1.82
52799830--52799980	27	5.6	27	90	1	187	43	7	21	27	1.80
52802527--52802606	24	3.3	23	84	8	81	31	22	20	26	1.98
52802539--52802632	25	3.8	25	88	1	136	28	22	23	25	1.99
52802663--52802693	16	1.9	16	93	0	53	35	16	19	29	1.93
52802942--52802984	18	2.4	18	92	0	77	27	32	20	18	1.96
52803576--52803826	27	9.4	27	73	10	142	30	9	19	40	1.83
52803804--52803960	27	5.9	27	88	1	172	42	6	22	28	1.78
52803777--52803987	54	3.9	53	74	4	172	38	6	23	31	1.81
52803805--52803987	80	2.3	81	80	0	197	39	6	24	30	1.80
52806492--52806658	40	4.2	40	81	2	167	23	26	22	26	2.00
52806508--52806658	80	1.9	79	83	6	198	23	27	23	26	2.00
52814541--52814707	40	4.2	40	82	2	176	23	27	22	25	2.00
52814541--52814707	80	2.1	79	83	7	205	23	27	22	25	2.00
52816527--52816569	21	2.0	21	100	0	86	30	18	9	41	1.82
52817816--52817922	25	4.4	25	89	3	139	28	23	21	27	1.99
52817816--52817923	49	2.2	48	87	8	155	28	23	21	26	1.99
52818715--52818791	27	2.8	26	81	14	93	22	19	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52818809--52819186	27	14.0	27	79	6	185	32	9	19	38	1.85
52818894--52819117	81	2.8	80	82	6	231	28	9	21	40	1.84
52818919--52819123	54	3.8	54	83	3	218	28	9	21	39	1.85
52819093--52819225	54	2.5	54	83	0	140	40	8	18	32	1.81
52819118--52819225	27	4.0	27	92	0	153	43	8	18	29	1.79
52819119--52819259	54	2.6	54	84	1	158	41	7	20	29	1.80
52819120--52819275	27	5.8	27	86	1	116	40	7	23	29	1.81
52822881--52822941	29	2.2	27	80	11	70	37	16	4	40	1.70
52822888--52822945	29	2.0	29	96	0	107	32	15	6	44	1.73
52826419--52826609	40	4.8	40	80	10	166	27	26	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444