genome.fa.s10.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  149  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40278891--40278989	28	3.5	28	83	4	110	28	15	27	29	1.96
40294257--40294442	40	4.7	40	86	5	234	24	20	26	28	1.99
40299761--40300096	155	2.2	155	86	2	460	43	8	5	42	1.58
40300915--40300967	14	3.5	14	76	18	61	45	1	0	52	1.11
40303217--40303723	252	2.0	252	97	0	960	23	20	16	39	1.92
40307672--40307711	20	2.0	21	85	5	55	35	15	5	45	1.68
40309356--40309580	79	2.8	79	83	7	294	26	27	21	25	1.99
40309356--40309580	40	5.7	40	85	6	271	26	27	21	25	1.99
40317487--40317708	40	5.6	40	80	10	224	26	26	20	26	1.99
40317487--40317704	79	2.7	80	81	8	257	26	25	20	27	1.99
40327488--40327882	50	7.9	50	75	4	355	31	24	16	27	1.97
40327492--40327883	151	2.6	151	92	0	658	31	24	16	27	1.97
40327497--40327882	101	3.8	100	76	4	294	31	25	16	26	1.96
40328230--40328276	19	2.3	20	82	10	60	48	14	0	36	1.44
40329591--40329726	48	2.8	48	85	0	173	27	23	22	26	1.99
40329505--40329726	91	2.4	95	84	5	274	27	21	22	27	1.99
40333514--40333614	48	2.1	48	88	0	148	26	20	25	26	1.99
40333838--40333897	27	2.2	28	96	3	113	36	15	15	33	1.88
40338402--40338574	46	3.7	46	79	10	199	22	18	27	31	1.97
40338399--40338569	93	1.8	93	91	0	279	22	18	28	30	1.97
40338798--40338835	19	2.0	20	85	15	53	36	0	23	39	1.55
40350236--40350411	46	3.8	46	79	12	216	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40350233--40350403	93	1.8	93	96	0	315	22	21	27	28	1.99
40368713--40368747	18	2.0	18	88	5	54	28	14	20	37	1.91
40369821--40369908	29	3.0	29	86	0	122	30	29	13	26	1.94
40371408--40371439	16	2.0	16	93	0	55	9	6	34	50	1.60
40371463--40371494	10	3.2	10	100	0	64	40	0	28	31	1.57
40377679--40377835	68	2.3	68	84	3	201	41	17	14	26	1.88
40381123--40381292	27	6.3	27	76	8	107	30	12	17	39	1.87
40381162--40381315	27	5.7	27	81	7	152	31	8	19	40	1.81
40381632--40381692	32	1.9	32	82	0	77	27	36	16	19	1.93
40394327--40394525	49	4.0	49	94	3	355	33	8	26	31	1.85
40394459--40394552	44	2.2	42	77	5	107	35	7	26	30	1.84
40394597--40394678	37	2.2	36	93	4	137	21	20	32	24	1.98
40405057--40405099	22	1.9	23	85	4	61	65	2	18	13	1.38
40419731--40419914	40	4.6	39	75	6	138	26	23	27	22	2.00
40419771--40419959	80	2.4	81	77	4	186	23	24	29	22	1.99
40434347--40434447	29	3.6	29	85	5	134	24	33	14	26	1.94
40441446--40441547	29	3.6	29	87	2	143	24	33	15	26	1.95
40449657--40449757	40	2.5	40	80	0	103	29	24	26	18	1.98
40449691--40449819	40	3.2	40	81	5	156	23	24	27	24	2.00
40455177--40455220	18	2.2	21	84	11	58	34	15	22	27	1.95
40460909--40460968	30	2.0	30	93	0	102	33	10	6	50	1.62
40460974--40461039	33	2.0	33	93	0	114	18	36	6	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40463522--40463585	30	2.2	29	88	2	92	34	25	15	25	1.95
40464581--40464605	13	1.9	13	100	0	50	40	24	4	32	1.73
40468768--40468954	71	2.7	68	93	5	281	18	28	18	34	1.95
40468791--40468954	71	2.3	71	100	0	328	18	28	17	35	1.94
40468791--40468988	71	2.8	70	92	3	276	20	28	17	33	1.95
40476330--40476516	71	2.7	68	93	5	281	18	28	18	34	1.95
40476353--40476516	71	2.3	71	100	0	328	18	28	17	35	1.94
40476353--40476550	71	2.8	70	92	3	276	20	28	17	33	1.95
40480989--40481175	71	2.7	68	92	5	281	18	28	18	34	1.95
40481012--40481175	71	2.3	71	98	0	319	18	28	18	35	1.94
40481012--40481209	71	2.8	70	90	3	249	20	28	17	33	1.95
40484675--40484845	46	3.7	46	79	12	181	19	21	30	27	1.98
40484679--40484853	45	3.8	46	79	13	207	19	21	30	28	1.97
40487763--40487831	15	4.6	15	79	0	75	13	17	11	57	1.64
40487754--40487841	30	3.0	30	78	8	90	11	17	14	56	1.66
40487763--40487842	15	5.4	14	77	4	61	11	17	12	58	1.62
40490214--40490385	93	1.9	92	90	1	272	20	19	30	29	1.97
40493519--40493544	2	13.0	2	100	0	52	50	0	0	50	1.00
40494069--40494132	30	2.2	29	97	2	119	34	23	17	25	1.96
40501617--40501655	20	2.0	20	85	10	53	48	10	20	20	1.78
40503158--40503202	16	2.8	16	79	0	54	46	17	24	11	1.81
40503157--40503210	24	2.3	23	81	6	63	46	18	22	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40503432--40503543	29	3.9	29	75	5	102	25	16	32	26	1.96
40507056--40507096	14	2.9	15	75	14	50	48	24	2	24	1.63
40509675--40509824	67	2.2	67	81	8	171	32	17	28	21	1.96
40509699--40509882	67	2.8	64	77	8	194	29	17	29	22	1.97
40510966--40510990	2	12.5	2	100	0	50	48	0	0	52	1.00
40515748--40515834	37	2.3	36	92	5	138	26	34	19	19	1.96
40515903--40516254	49	7.2	49	96	0	650	30	29	8	30	1.86
40517551--40517831	49	5.7	49	96	0	526	31	30	8	29	1.86
40524128--40524277	67	2.2	67	81	8	171	32	17	28	21	1.96
40524152--40524335	67	2.8	64	77	8	194	29	17	29	22	1.97
40528570--40528719	67	2.2	67	81	8	171	32	17	28	21	1.96
40528594--40528777	67	2.8	64	77	8	194	29	17	29	22	1.97
40530674--40530765	45	2.0	45	85	0	121	16	20	17	45	1.85
40531330--40531686	180	2.0	180	84	2	475	33	20	7	38	1.82
40535608--40535941	179	1.9	181	87	2	494	33	19	6	41	1.77
40536512--40536895	50	7.6	50	78	6	346	31	24	17	26	1.97
40536563--40536854	101	2.9	101	89	0	422	31	25	18	25	1.97
40541634--40541785	40	3.8	40	84	3	180	27	23	26	23	2.00
40541634--40541787	80	1.9	80	86	0	218	27	22	26	22	1.99
40541634--40541841	40	5.2	40	80	2	166	27	24	25	22	1.99
40541638--40541805	80	2.1	80	82	0	201	27	23	26	22	1.99
40547849--40547974	39	3.2	39	91	0	198	22	20	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40547849--40548012	39	4.2	39	85	2	188	21	21	29	26	1.99
40551749--40551783	12	2.9	12	86	0	52	34	22	0	42	1.54
40554255--40554331	24	3.2	24	63	26	63	27	14	15	42	1.85
40556062--40556184	42	2.9	43	77	10	137	32	13	22	30	1.93
40556620--40556690	33	2.2	33	84	0	88	43	16	21	18	1.88
40573454--40573537	38	2.2	38	97	2	159	36	17	19	26	1.94
40574550--40574663	35	3.2	36	74	4	108	19	16	13	50	1.77
40576812--40576851	20	2.0	20	95	0	71	32	27	0	40	1.57
40580076--40580193	51	2.3	51	86	0	155	25	28	12	33	1.93
40582111--40582222	18	6.4	17	71	19	63	60	1	5	32	1.29
40582083--40582163	9	8.7	9	71	15	58	64	1	2	32	1.15
40582157--40582200	15	2.8	16	82	6	63	61	0	6	31	1.22
40583824--40583863	17	2.4	17	87	8	55	65	0	2	32	1.06
40584111--40585148	247	4.2	248	83	3	1187	29	14	12	44	1.81
40584142--40585119	495	2.0	495	85	2	1327	28	14	12	44	1.82
40585614--40585731	62	1.9	63	89	1	184	51	13	6	27	1.66
40585627--40585721	28	3.2	27	68	25	66	51	14	6	27	1.66
40586110--40586171	3	21.0	3	90	3	99	35	0	0	64	0.94
40593150--40593198	17	2.8	18	74	22	50	24	18	22	34	1.96
40594018--40594168	40	3.8	40	79	6	155	25	22	27	23	2.00
40601155--40601203	17	2.8	18	74	22	50	24	18	22	34	1.96
40602024--40602174	40	3.8	40	79	6	155	25	22	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40613999--40614167	46	3.7	47	80	12	165	27	19	28	24	1.99
40615186--40615296	41	2.7	41	87	4	152	25	21	37	15	1.92
40622656--40622695	18	2.2	19	86	4	55	25	5	0	70	1.08
40622689--40622746	26	2.3	26	85	11	77	20	13	1	63	1.38
40627173--40627210	19	2.0	20	85	15	53	39	23	0	36	1.55
40630866--40631016	40	3.8	39	80	6	153	27	23	27	22	1.99
40630903--40631032	40	3.3	39	80	4	161	24	23	27	24	2.00
40637932--40637969	19	2.0	20	85	15	53	39	23	0	36	1.55
40638198--40638366	91	1.8	92	94	1	304	28	28	21	21	1.98
40638193--40638363	46	3.7	46	79	13	208	29	28	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444