genome.fa.s10.2.7.7.80.10.50.1000.245.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  245  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69504719--69504797	31	2.5	31	93	0	140	26	26	17	29	1.98
69504821--69504912	42	2.2	42	90	0	139	35	20	14	29	1.92
69505057--69505154	26	3.8	26	87	1	144	23	23	25	27	2.00
69505057--69505154	52	1.9	51	91	2	160	23	23	25	27	2.00
69505957--69506021	27	2.4	27	89	0	103	16	29	18	35	1.93
69506079--69506242	27	6.0	26	73	11	89	32	6	18	42	1.76
69506229--69506439	27	7.8	27	89	0	251	37	7	26	28	1.83
69506158--69506261	54	1.9	54	80	3	120	35	4	20	39	1.74
69506428--69506534	27	4.0	27	76	4	92	31	9	18	40	1.83
69509274--69509421	43	3.5	42	79	5	154	27	18	25	28	1.98
69512173--69512358	40	4.6	39	87	5	214	26	26	20	25	1.99
69514196--69514251	20	2.8	20	91	0	94	51	0	25	23	1.48
69515541--69515579	10	3.8	10	93	6	69	30	17	17	33	1.94
69515541--69515580	21	1.9	21	100	0	80	30	17	17	35	1.93
69515543--69515588	21	2.2	21	92	0	74	34	19	15	30	1.93
69518576--69518676	28	3.5	28	86	6	114	29	13	26	29	1.94
69525736--69525836	28	3.5	28	86	6	114	29	13	26	29	1.94
69536019--69536071	27	2.0	27	88	0	79	35	16	15	32	1.90
69543024--69543187	39	4.2	39	89	1	222	17	17	29	34	1.93
69542995--69543187	39	4.9	38	87	1	215	19	19	28	33	1.96
69547219--69547270	27	1.9	27	92	0	86	28	19	19	32	1.96
69557123--69557223	42	2.4	42	93	0	175	28	13	35	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69557238--69557306	27	2.5	27	83	2	84	28	14	24	31	1.95
69560381--69560590	40	5.2	40	88	2	305	21	28	24	25	1.99
69568521--69568730	40	5.2	40	88	2	305	21	28	24	25	1.99
69577225--69577354	40	3.2	40	80	2	154	24	27	23	23	2.00
69582096--69582281	27	6.9	27	84	2	185	33	20	6	38	1.80
69582083--69582281	82	2.5	80	79	1	236	35	20	7	37	1.80
69582203--69582459	27	9.4	27	79	6	187	38	19	9	33	1.83
69582077--69582481	54	7.5	54	76	4	242	36	19	8	35	1.83
69582231--69582481	110	2.3	107	82	3	279	38	19	9	31	1.84
69582500--69582577	27	2.9	27	75	11	79	37	20	20	21	1.95
69583286--69583352	20	3.3	20	89	4	100	40	10	17	31	1.84
69583402--69583511	26	4.3	26	90	4	165	28	20	23	27	1.99
69583402--69583511	51	2.2	49	88	8	159	28	20	23	27	1.99
69583644--69583735	42	2.2	42	88	0	130	29	14	20	35	1.92
69583763--69583835	30	2.4	30	93	0	119	27	21	23	27	1.99
69587425--69587460	2	18.0	2	94	0	63	47	0	0	52	1.00
69596224--69596302	32	2.5	32	91	4	124	24	18	27	29	1.98
69598575--69598782	40	5.2	40	82	2	202	25	23	25	25	2.00
69598577--69598782	80	2.6	80	83	3	236	25	23	26	24	2.00
69606628--69606835	40	5.2	40	82	2	202	25	23	25	25	2.00
69606630--69606835	80	2.6	80	83	3	236	25	23	26	24	2.00
69609041--69609217	48	3.7	48	79	0	183	30	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69609022--69609214	96	2.0	96	84	0	251	31	22	23	22	1.98
69609416--69609589	48	3.6	48	88	0	258	24	17	30	27	1.97
69609417--69609675	48	5.5	47	77	7	111	26	18	27	27	1.98
69613426--69613591	46	3.6	46	74	11	153	23	28	19	28	1.98
69613380--69613591	92	2.3	89	80	12	209	24	28	18	28	1.98
69613808--69613835	9	3.1	9	100	0	56	21	10	21	46	1.81
69622710--69622849	51	2.8	49	85	4	201	27	27	20	25	1.99
69623151--69623192	16	2.6	16	96	0	75	38	23	0	38	1.55
69624056--69624259	53	3.8	53	77	5	203	20	22	20	37	1.95
69628707--69628825	27	4.4	27	84	0	148	32	17	21	27	1.96
69628707--69628825	54	2.2	54	87	0	166	32	17	21	27	1.96
69628705--69628837	27	5.0	26	75	16	87	31	18	21	28	1.97
69629175--69629227	27	2.0	27	84	0	70	28	18	18	33	1.95
69630628--69630859	40	5.8	40	85	1	295	26	23	26	24	2.00
69637996--69638227	40	5.8	40	87	3	306	25	21	28	24	1.99
69642474--69642586	49	2.5	44	82	7	127	25	29	20	24	1.99
69645792--69645830	20	2.0	20	85	10	53	35	17	0	46	1.49
69650472--69650572	28	3.5	28	86	6	114	29	13	26	29	1.94
69659965--69660095	30	4.5	30	86	8	171	32	13	25	28	1.94
69659965--69660095	58	2.2	58	86	4	174	32	13	25	28	1.94
69668562--69668777	46	4.7	46	91	0	315	39	15	23	21	1.91
69668512--69668777	138	2.0	130	87	5	379	39	15	23	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69670594--69670730	40	3.5	38	80	10	152	22	29	16	31	1.95
69670594--69670754	79	2.0	80	84	5	211	22	27	16	32	1.95
69670594--69670754	40	4.1	40	79	3	146	22	27	16	32	1.95
69674159--69674289	47	2.8	46	87	2	172	32	29	16	22	1.96
69680390--69680510	43	2.8	43	80	6	131	23	19	24	33	1.97
69680390--69680502	42	2.7	42	80	4	129	23	19	23	32	1.97
69684902--69685073	93	1.8	93	93	0	299	29	28	20	21	1.98
69684895--69685070	46	3.8	46	77	12	198	30	28	19	21	1.98
69684903--69685089	46	4.0	44	72	16	130	29	28	19	21	1.98
69691289--69691460	93	1.8	93	96	0	317	27	29	21	20	1.98
69691282--69691457	46	3.8	46	79	12	216	28	29	21	20	1.98
69694994--69695153	47	3.4	47	78	9	132	25	29	18	26	1.98
69699656--69699805	75	2.0	74	94	1	264	38	18	12	30	1.87
69701530--69701568	21	1.9	20	84	5	51	23	30	30	15	1.95
69702710--69702925	47	4.6	46	79	10	204	23	30	19	26	1.98
69702710--69702930	94	2.3	93	84	6	268	23	30	19	26	1.98
69707018--69707064	20	2.3	20	96	0	85	25	12	21	40	1.89
69709883--69710059	50	3.6	50	78	9	166	27	18	24	29	1.98
69709936--69710016	26	3.2	26	66	25	73	28	14	25	30	1.95
69715463--69715511	24	2.0	24	100	0	98	28	32	12	26	1.92
69718700--69718944	123	2.0	123	95	1	447	28	21	14	35	1.93
69719592--69719650	29	2.1	28	84	6	75	28	25	1	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69723288--69723389	28	3.5	29	81	6	109	28	27	14	29	1.95
69731142--69731243	28	3.5	29	81	6	109	28	27	14	29	1.95
69732958--69733060	29	3.6	29	92	2	154	26	32	15	26	1.96
69738082--69738251	40	4.2	40	85	3	225	21	28	24	25	1.99
69746174--69746343	40	4.2	40	85	3	225	21	28	24	25	1.99
69753135--69753159	13	1.9	13	100	0	50	40	0	0	60	0.97
69753595--69753650	25	2.1	27	87	6	80	60	1	5	32	1.29
69753640--69753678	19	2.1	19	85	9	53	35	0	10	53	1.35
69759584--69759853	47	5.7	47	91	2	387	33	7	30	28	1.85
69763991--69764020	14	2.1	14	93	0	51	50	0	0	50	1.00
69765755--69765790	18	1.9	18	88	5	54	22	16	5	55	1.62
69766639--69766670	16	2.0	16	100	0	64	50	18	25	6	1.70
69780195--69780489	143	2.1	141	98	1	563	21	10	29	38	1.87
69781133--69781264	29	4.6	29	88	0	165	29	15	31	24	1.95
69795027--69795110	24	3.5	23	73	14	80	25	20	16	38	1.93
69801905--69802034	40	3.2	40	82	4	165	23	28	24	23	2.00
69801905--69802068	40	4.1	40	78	4	145	21	28	25	25	1.99
69809962--69810091	40	3.2	40	82	4	165	23	28	24	23	2.00
69809962--69810124	40	4.1	40	78	5	145	22	28	24	25	1.99
69812964--69813017	27	2.0	27	92	0	90	24	16	31	27	1.96
69818358--69818382	5	5.0	5	100	0	50	20	0	0	80	0.72
69821229--69821346	63	1.9	62	82	5	148	33	14	11	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69821818--69821880	29	2.1	31	82	5	76	49	12	7	30	1.69
69822095--69822119	6	4.2	6	100	0	50	16	0	0	84	0.63
69823317--69823353	18	2.0	19	89	5	58	8	35	2	54	1.44
69824331--69824383	24	2.2	25	82	6	72	50	7	18	22	1.72
69824338--69824385	24	2.0	24	95	0	87	45	6	25	22	1.75
69827854--69827885	10	3.3	10	95	4	57	93	0	0	6	0.34
69830044--69830164	39	3.1	39	89	0	197	19	22	32	25	1.98
69832389--69832489	28	3.6	27	78	7	112	16	17	35	29	1.93
69832387--69832516	57	2.2	57	89	2	188	19	16	34	30	1.93
69835634--69835667	15	2.3	15	100	0	68	23	32	29	14	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444