Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  151  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40902854--40903029
46
3.8
46
81
10
232
20
21
29
28
1.98
40902850--40903021
93
1.8
93
96
0
317
20
22
30
27
1.98
40905980--40906048
15
4.6
15
83
0
84
11
17
13
57
1.64
40905971--40906058
30
3.0
30
81
8
99
10
17
15
56
1.66
40908438--40908613
46
3.8
46
81
10
232
20
21
29
28
1.98
40908434--40908605
93
1.8
93
96
0
317
20
22
30
27
1.98
40914679--40914886
40
5.2
39
82
3
202
25
25
23
25
2.00
40914679--40914885
80
2.6
80
82
3
238
25
26
23
25
2.00
40917295--40917358
33
2.0
33
84
9
87
28
23
20
28
1.99
40918949--40919016
15
4.7
14
71
16
50
66
0
29
4
1.11
40920030--40920091
25
2.4
26
83
5
72
54
3
3
38
1.32
40923725--40923792
15
4.7
14
71
16
50
66
0
29
4
1.11
40924794--40924822
15
1.9
15
100
0
58
58
0
0
41
0.98
40924809--40924870
25
2.4
26
86
5
81
56
3
1
38
1.25
40930037--40930303
48
5.6
48
87
2
385
25
16
28
29
1.96
40930038--40930354
96
3.3
95
83
6
376
25
15
27
30
1.96
40930034--40930354
144
2.2
145
86
9
460
25
15
27
31
1.96
40933061--40933268
40
5.2
39
82
3
202
25
25
23
25
2.00
40933061--40933267
80
2.6
80
82
3
238
25
26
23
25
2.00
40940561--40940635
28
2.6
28
78
2
87
21
36
20
22
1.96
40940619--40940692
29
2.6
29
95
0
139
27
31
14
27
1.95
40946220--40946352
40
3.4
39
78
7
144
25
21
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40954248--40954415
40
4.2
40
80
3
196
25
22
27
25
2.00
40959510--40959612
40
2.6
40
95
0
188
26
27
24
22
2.00
40963060--40963084
13
1.9
13
100
0
50
28
24
8
40
1.83
40964856--40964886
16
1.9
16
100
0
62
35
19
0
45
1.51
40964853--40964892
20
2.0
20
90
0
62
37
20
0
42
1.52
40965120--40965335
55
4.0
54
82
6
267
21
25
17
35
1.95
40965128--40965328
108
1.8
110
90
4
327
22
25
17
34
1.96
40976599--40976903
48
6.4
48
88
0
432
24
15
29
30
1.96
40983887--40983918
5
6.4
5
92
0
55
18
15
0
65
1.27
40986660--40986945
40
7.2
39
82
8
249
25
21
27
25
1.99
40986663--40986924
79
3.3
80
88
4
363
24
21
27
25
1.99
40990783--40990825
23
1.9
22
85
4
59
48
27
6
16
1.71
40991552--40991712
43
3.8
41
78
10
137
32
25
18
24
1.97
40994470--40994641
93
1.8
93
91
2
283
29
29
19
21
1.98
40994463--40994638
46
3.8
46
77
14
182
30
28
19
21
1.97
40998456--40998581
48
2.6
48
88
0
180
35
7
26
30
1.85
40998467--40998610
48
3.0
47
81
6
164
34
8
27
30
1.86
40998740--40998819
36
2.2
37
93
2
135
21
21
32
25
1.98
41001052--41001445
40
9.9
40
82
2
411
22
23
29
24
1.99
41001093--41001443
80
4.4
80
90
0
499
21
23
29
24
1.99
41004474--41004564
37
2.4
37
92
1
155
24
32
18
24
1.97
41004660--41004865
49
4.4
49
86
10
304
28
32
9
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41009086--41009131
22
2.1
22
100
0
92
39
19
17
23
1.92
41015371--41015439
15
4.6
15
83
0
84
11
17
13
57
1.64
41015362--41015449
30
3.0
30
81
8
99
10
17
15
56
1.66
41017824--41018004
46
3.9
46
81
9
233
20
21
29
27
1.98
41017826--41017996
93
1.8
93
96
0
315
20
22
29
27
1.98
41023215--41023322
43
2.5
42
77
5
119
34
28
13
23
1.93
41026531--41026631
28
3.5
30
82
6
118
29
14
26
28
1.95
41026560--41026635
29
2.7
28
76
13
75
30
14
26
28
1.95
41034408--41034508
28
3.5
30
82
6
118
29
14
26
28
1.95
41034437--41034512
29
2.7
28
76
13
75
30
14
26
28
1.95
41039013--41039108
47
2.0
47
81
0
111
22
14
27
35
1.93
41047167--41047229
27
2.3
27
81
5
74
39
23
17
19
1.92
41059844--41059956
27
4.2
26
83
8
118
37
22
22
18
1.94
41059844--41059956
55
2.1
54
83
5
138
37
22
22
18
1.94
41060371--41060411
8
5.1
8
87
0
55
4
24
21
48
1.69
41065764--41065955
40
4.8
39
71
10
138
23
27
23
25
2.00
41070852--41070965
27
4.2
26
83
8
129
37
23
21
16
1.93
41070852--41070965
55
2.1
54
85
4
149
37
23
21
16
1.93
41073677--41073708
15
2.1
15
94
0
55
84
0
12
3
0.74
41074827--41074858
13
2.5
13
100
0
64
28
6
15
50
1.68
41077959--41078074
39
3.0
39
93
0
205
28
25
20
25
1.99
41085207--41085325
39
3.1
39
93
0
202
28
23
21
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41087048--41087072
12
2.1
12
100
0
50
32
16
32
20
1.94
41092295--41092324
15
2.0
15
93
0
51
16
20
6
56
1.62
41109195--41109274
28
3.0
26
78
10
72
37
23
21
17
1.94
41109207--41109274
28
2.5
27
83
7
84
35
25
23
16
1.95
41112517--41112703
71
2.7
68
93
5
281
18
28
18
34
1.95
41112540--41112703
71
2.3
71
100
0
328
18
28
17
35
1.94
41112540--41112737
71
2.8
70
92
3
276
20
28
17
33
1.95
41114644--41114729
42
2.0
43
88
2
129
27
30
18
23
1.98
41124703--41124742
11
3.5
11
86
3
53
75
0
10
15
1.05
41126480--41126540
31
2.0
31
86
0
86
54
18
9
18
1.70
41128434--41128487
22
2.5
20
80
13
63
51
7
5
35
1.53
41134475--41134499
13
1.9
13
100
0
50
32
16
16
36
1.90
41135397--41135550
40
3.8
40
79
1
148
26
20
26
25
1.99
41137008--41137052
21
2.1
21
95
0
81
22
33
20
24
1.97
41139288--41139337
14
3.6
14
81
7
50
48
36
0
16
1.46
41160309--41160379
36
2.0
36
97
0
133
30
12
14
42
1.82
41164806--41164983
46
3.8
46
78
4
205
28
28
20
22
1.99
41164814--41164985
93
1.8
93
91
0
281
27
29
20
22
1.99
41169308--41169517
40
5.2
40
88
2
305
21
28
24
25
1.99
41177443--41177652
40
5.2
40
88
2
305
21
28
24
25
1.99
41180307--41180478
38
4.4
40
79
14
184
25
26
22
26
2.00
41183148--41183319
93
1.8
93
96
0
317
27
30
22
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41183140--41183315
46
3.8
46
81
10
232
28
29
21
20
1.98
41185698--41185786
30
3.0
30
80
8
101
57
15
16
10
1.65
41185698--41185777
15
5.4
15
80
7
92
58
13
17
10
1.62
41185709--41185786
15
5.2
15
78
9
79
56
15
16
11
1.67
41188741--41188912
93
1.8
93
96
0
317
27
30
22
20
1.98
41188733--41188908
46
3.8
46
81
10
232
28
29
21
20
1.98
41191293--41191381
30
3.0
30
80
8
101
57
15
16
10
1.65
41191293--41191372
15
5.4
15
80
7
92
58
13
17
10
1.62
41191304--41191381
15
5.2
15
78
9
79
56
15
16
11
1.67
41194331--41194502
93
1.8
93
96
0
317
27
30
22
20
1.98
41194323--41194498
46
3.8
46
81
10
232
28
29
21
20
1.98
41196374--41196502
20
6.4
20
93
0
204
14
20
27
37
1.92
41196475--41196514
20
2.0
20
85
0
53
12
35
27
25
1.92
41196399--41196526
60
2.1
60
83
0
157
14
24
26
34
1.94
41196531--41196591
26
2.3
26
80
0
68
24
16
18
40
1.90
41198348--41198464
43
2.8
42
75
12
114
23
16
25
34
1.95
41214074--41214124
22
2.3
22
100
0
102
45
23
7
23
1.79
41216294--41216508
39
5.5
39
87
4
283
20
23
26
29
1.98
41221329--41221570
120
2.0
120
83
3
299
28
26
20
24
1.99
41221329--41221538
40
5.2
40
90
1
296
28
27
20
23
1.99
41221659--41221974
64
5.1
64
59
16
160
34
26
10
28
1.89
41221541--41222125
123
4.8
123
97
0
1062
34
25
10
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41225792--41225820
2
14.5
2
100
0
58
48
0
0
51
1.00
41226588--41226796
38
5.5
39
87
7
281
19
23
27
30
1.98
41233051--41233176
40
3.2
40
82
0
153
23
22
29
24
1.99
41236574--41236779
39
5.3
39
92
0
324
19
22
27
30
1.98
41239984--41240113
39
3.3
39
91
0
215
22
28
23
26
1.99
41244795--41244885
39
2.3
39
94
3
157
29
27
23
19
1.98
41244901--41244942
2
21.0
2
95
0
75
50
47
0
2
1.14
41251787--41251833
20
2.3
20
88
0
76
14
27
34
23
1.94
41255603--41255918
27
11.7
27
87
3
404
28
24
8
38
1.84
41255628--41256064
27
16.2
27
84
5
132
32
23
8
35
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444