genome.fa.s10.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  226  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63595518--63595689	93	1.8	93	93	0	299	20	20	29	29	1.98
63598497--63598522	13	2.0	13	100	0	52	38	15	30	15	1.88
63599372--63599469	51	2.0	50	89	4	153	29	4	9	57	1.49
63599375--63599481	51	2.1	49	83	6	126	31	5	9	53	1.56
63606505--63606634	40	3.3	39	76	8	136	23	27	23	24	2.00
63606521--63606672	40	3.8	40	78	6	148	22	26	23	27	1.99
63606521--63606670	80	1.9	80	83	8	198	22	26	24	27	1.99
63608818--63608947	40	3.2	40	81	2	163	23	23	28	24	2.00
63616777--63616927	40	3.8	40	77	13	141	25	24	27	22	2.00
63616814--63616943	40	3.2	40	81	2	163	23	23	28	24	2.00
63622805--63622933	46	2.8	46	95	0	222	29	30	20	19	1.97
63622813--63622952	46	3.0	45	88	4	140	28	30	20	20	1.98
63627827--63628034	40	5.2	40	83	2	211	25	23	25	25	2.00
63627828--63628034	80	2.6	80	82	6	240	25	23	26	25	2.00
63635830--63636036	40	5.2	40	84	1	218	25	22	26	25	2.00
63635831--63636036	79	2.6	77	83	5	241	25	22	26	25	2.00
63642302--63642678	48	7.9	48	94	2	632	34	6	28	30	1.82
63644174--63644604	40	10.8	40	94	0	736	21	21	29	27	1.99
63648064--63648440	48	7.9	48	93	2	623	35	5	27	31	1.81
63654138--63654199	28	2.2	28	82	5	72	19	20	22	37	1.95
63664291--63664350	30	2.0	30	90	6	95	16	23	21	38	1.93
63668957--63668988	3	10.7	3	93	0	55	31	3	0	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63675274--63675417	43	3.4	42	80	7	139	32	25	17	24	1.97
63677918--63678030	39	2.9	39	91	0	199	27	20	30	22	1.98
63686086--63686233	40	3.7	40	83	0	161	27	20	27	24	1.99
63688314--63688343	16	1.9	15	93	6	51	33	23	0	43	1.54
63691764--63691808	15	3.0	15	83	0	63	57	13	15	13	1.65
63691949--63691973	2	12.5	2	100	0	50	48	0	0	52	1.00
63695731--63695857	56	2.3	56	95	0	227	24	19	28	27	1.99
63695763--63695923	56	2.9	54	83	3	160	21	17	31	30	1.96
63699195--63699483	50	5.7	50	77	2	265	31	26	15	25	1.96
63699195--63699483	101	2.9	100	80	3	294	31	26	15	25	1.96
63700219--63700311	33	2.8	33	81	0	96	27	16	25	30	1.96
63704496--63704577	39	2.1	39	95	0	146	32	7	18	41	1.78
63706081--63706165	26	3.4	24	75	10	73	24	20	16	38	1.92
63708183--63708398	40	5.4	40	89	2	287	25	26	22	25	2.00
63713966--63714276	39	8.0	39	91	1	491	23	28	25	21	1.99
63713966--63714276	77	4.0	78	91	2	491	23	28	25	21	1.99
63713965--63714276	116	2.7	116	90	2	500	23	28	25	22	1.99
63717284--63717730	47	9.4	47	94	2	745	28	31	7	33	1.85
63717558--63717636	25	3.3	25	63	22	69	30	32	5	31	1.79
63717284--63717730	189	2.4	190	94	3	776	28	31	7	33	1.85
63724388--63724620	39	6.0	39	90	0	376	23	27	25	22	2.00
63727640--63727741	51	2.0	52	90	1	161	35	12	14	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63732728--63732936	40	5.2	40	84	6	237	26	26	21	25	1.99
63735411--63735472	28	2.3	26	89	8	97	19	9	29	41	1.83
63735411--63735478	27	2.5	28	92	4	113	19	10	27	42	1.83
63736111--63736271	27	6.0	27	83	0	214	32	8	19	39	1.81
63736114--63736264	54	2.8	54	92	0	248	31	7	21	40	1.80
63736257--63736507	27	9.3	27	87	6	312	40	8	22	29	1.83
63736122--63736291	81	2.1	81	77	2	180	34	7	20	38	1.81
63736257--63736507	54	4.6	54	88	3	362	40	8	22	29	1.83
63739552--63739613	28	2.3	26	86	8	88	20	9	27	41	1.84
63739552--63739618	27	2.5	28	90	4	102	20	10	25	43	1.84
63740254--63740414	27	6.0	27	82	0	205	32	8	19	39	1.82
63740257--63740407	54	2.8	54	90	0	239	31	7	20	40	1.81
63740400--63740648	27	9.2	27	86	0	309	40	8	22	28	1.83
63740265--63740434	81	2.1	81	77	2	180	34	8	19	38	1.82
63740400--63740648	54	4.6	54	91	0	390	40	8	22	28	1.83
63740402--63740648	81	3.0	81	83	6	347	40	8	22	28	1.83
63747682--63747834	40	3.8	40	78	9	143	22	23	28	25	2.00
63750685--63750747	30	2.1	30	87	3	90	25	23	15	34	1.95
63750937--63751055	23	5.0	23	86	7	159	26	21	21	30	1.98
63751105--63751165	20	3.0	20	90	0	95	32	19	11	36	1.88
63751208--63751255	25	1.9	25	86	0	69	25	16	25	33	1.96
63752491--63752686	27	7.3	27	85	3	216	42	7	22	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63752490--63752686	81	2.4	81	83	6	247	42	7	22	28	1.80
63754595--63754747	40	3.8	40	78	9	143	22	23	28	25	2.00
63757507--63757557	27	1.9	26	84	4	66	19	27	17	35	1.94
63771680--63771760	25	3.4	25	62	10	69	32	4	32	30	1.79
63771608--63771837	47	4.9	47	91	2	374	30	8	31	29	1.86
63771848--63771980	48	2.7	48	89	2	185	33	7	29	29	1.85
63772020--63772106	37	2.3	36	94	5	147	20	19	33	26	1.97
63774514--63774781	48	5.6	47	78	7	227	26	18	30	25	1.98
63774514--63774781	96	2.8	96	75	3	263	26	18	30	25	1.98
63775553--63775582	15	2.0	15	93	0	51	20	3	20	56	1.56
63781315--63781411	40	2.4	40	89	0	140	20	16	29	32	1.95
63781396--63781508	28	4.0	29	78	11	128	26	11	31	30	1.91
63781396--63781503	56	1.9	56	94	0	189	25	12	32	29	1.92
63795477--63795642	40	4.2	40	95	1	280	25	28	22	24	1.99
63795446--63795642	80	2.5	80	87	4	290	26	27	21	23	1.99
63797246--63797493	40	6.2	40	83	2	257	25	21	27	25	2.00
63807694--63807856	70	2.3	71	97	1	310	19	28	18	34	1.95
63807694--63807890	70	2.8	70	90	4	249	20	28	17	32	1.96
63816490--63816603	40	2.8	39	84	2	138	25	28	22	22	1.99
63820674--63820731	30	1.9	30	86	6	82	17	27	32	22	1.96
63822740--63822765	11	2.4	11	100	0	52	84	0	7	7	0.77
63824549--63824604	26	2.1	26	87	9	78	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63824572--63824617	16	2.9	16	80	3	58	71	0	28	0	0.86
63824549--63824601	25	2.0	27	89	7	83	69	0	30	0	0.88
63824564--63824626	18	3.3	18	80	10	63	71	0	28	0	0.86
63825556--63825644	42	2.1	42	85	4	117	16	31	25	25	1.97
63828415--63828458	22	2.0	22	95	0	79	29	18	11	40	1.85
63830493--63830521	13	2.2	13	100	0	58	37	27	20	13	1.91
63833456--63833507	26	2.0	26	100	0	104	42	0	23	34	1.54
63838046--63838097	14	3.8	13	76	14	52	1	19	0	78	0.84
63851783--63851865	28	3.0	28	96	0	148	22	10	34	31	1.89
63852198--63852421	27	8.3	27	80	7	251	39	16	10	33	1.84
63852188--63852461	27	10.1	27	79	7	142	39	16	12	31	1.86
63857108--63857798	349	2.0	349	95	0	1256	34	17	16	31	1.93
63859499--63859529	16	1.9	16	93	0	53	51	25	16	6	1.68
63863256--63863560	41	7.7	41	77	8	254	33	14	29	22	1.94
63866126--63866329	40	5.1	40	89	1	284	22	21	29	26	1.99
63866122--63866333	80	2.7	80	89	2	320	23	21	28	26	1.99
63874328--63874372	16	2.9	16	79	20	51	37	0	28	33	1.58
63874421--63874527	42	2.5	42	96	0	196	28	14	33	22	1.94
63874535--63874603	26	2.5	28	86	4	97	27	14	26	31	1.95
63882839--63883602	384	2.0	383	99	0	1510	34	10	24	30	1.89
63888033--63888139	42	2.5	42	96	0	196	28	14	33	22	1.94
63888147--63888216	27	2.5	28	86	2	97	27	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63890952--63891133	40	4.6	40	90	1	267	24	20	28	26	1.99
63890942--63891153	80	2.7	80	87	2	302	24	21	27	27	1.99
63897558--63897742	98	1.9	97	86	3	264	21	28	22	27	1.99
63897513--63897739	49	4.7	49	77	11	200	23	27	22	26	1.99
63898670--63898711	17	2.5	17	96	0	75	9	30	26	33	1.88
63900393--63900424	2	16.0	2	100	0	64	50	0	0	50	1.00
63901770--63901811	22	2.0	21	90	4	66	30	0	7	61	1.22
63901775--63901825	22	2.3	23	80	10	61	27	0	9	62	1.26
63911676--63911954	49	5.6	49	74	7	220	30	26	17	25	1.97
63911673--63911954	150	1.9	149	85	5	390	30	26	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444