genome.fa.s10.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  162  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44610047--44610120	28	2.7	28	91	2	123	31	14	25	28	1.95
44612446--44612580	17	7.4	17	64	14	63	48	14	5	32	1.65
44612438--44612563	17	6.8	20	67	13	90	46	15	5	32	1.68
44612438--44612602	74	2.2	74	91	4	253	46	14	6	32	1.69
44612437--44612585	37	4.0	37	95	0	262	45	14	6	33	1.70
44616864--44617024	29	5.6	29	88	1	216	26	32	16	24	1.96
44618215--44618285	19	3.9	18	75	17	58	9	16	1	71	1.19
44618215--44618269	18	3.0	18	80	19	69	5	16	1	76	1.06
44626326--44626499	46	3.8	45	78	8	181	28	19	29	22	1.98
44626711--44626759	22	2.2	22	81	3	53	40	10	12	36	1.77
44627693--44627740	14	3.3	14	72	11	51	70	10	4	14	1.29
44627701--44627754	16	3.5	16	72	10	58	64	11	7	16	1.47
44627692--44627754	30	2.1	30	100	0	126	68	9	6	15	1.37
44628100--44628178	39	2.0	39	95	0	140	24	27	5	43	1.75
44628194--44628225	16	1.9	16	93	6	55	46	9	0	43	1.35
44629596--44630598	137	7.3	137	95	0	1738	27	20	19	33	1.96
44630345--44630589	45	5.5	42	73	12	152	27	21	19	31	1.97
44635388--44635428	18	2.3	18	87	4	57	4	26	0	68	1.10
44635387--44635433	22	2.1	22	81	14	53	6	29	0	63	1.19
44643066--44643143	39	2.0	39	97	0	147	23	29	5	42	1.75
44644159--44644196	15	2.5	15	100	0	76	23	7	47	21	1.77
44651264--44651431	40	4.2	40	78	5	164	23	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44658535--44658705	91	1.9	90	80	6	202	42	17	12	27	1.86
44661072--44661115	19	2.3	19	84	7	54	59	0	6	34	1.24
44664990--44665037	25	1.9	25	83	8	62	16	20	22	39	1.92
44668071--44668344	50	5.6	50	83	3	333	23	26	19	30	1.98
44675807--44676008	50	4.3	49	76	12	158	25	26	18	29	1.98
44675834--44676008	50	3.7	49	76	10	177	25	26	19	28	1.99
44675835--44676005	95	1.8	91	85	7	236	26	26	18	28	1.98
44682967--44683103	54	2.6	54	80	1	159	18	24	18	37	1.94
44682953--44683095	53	2.7	53	82	1	169	21	25	16	36	1.94
44691222--44691277	26	2.2	26	83	0	67	17	8	26	46	1.78
44695414--44695454	11	3.5	11	93	6	64	31	9	17	41	1.82
44697120--44697327	40	5.2	39	82	5	213	25	25	23	25	2.00
44697120--44697326	80	2.6	80	83	3	247	25	25	23	25	2.00
44703182--44703355	50	3.5	49	83	3	197	25	18	26	29	1.98
44709006--44709250	49	4.9	50	81	3	262	25	18	26	28	1.98
44709009--44709252	100	2.5	100	83	6	273	25	18	27	29	1.98
44715980--44716018	12	3.2	12	81	0	51	51	2	10	35	1.50
44718940--44718967	14	2.0	14	100	0	56	42	7	0	50	1.30
44718931--44719043	58	2.0	56	86	8	158	39	12	1	46	1.52
44719356--44719390	2	17.5	2	100	0	70	48	0	0	51	1.00
44719939--44719999	25	2.4	25	75	5	59	60	3	3	32	1.29
44726999--44727055	30	1.9	30	100	0	114	26	40	14	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44729496--44729548	24	2.2	24	86	6	72	20	24	20	33	1.97
44729511--44729559	23	2.1	24	81	11	57	22	24	16	36	1.94
44730165--44730224	29	2.1	29	100	0	120	40	13	25	21	1.89
44735865--44736025	46	3.5	45	79	13	161	22	29	19	27	1.98
44739351--44739428	16	5.4	16	65	22	64	38	2	17	41	1.64
44739353--44739439	28	3.1	27	95	1	147	40	3	18	37	1.68
44741218--44741244	14	1.9	14	100	0	54	62	0	0	37	0.95
44741767--44741794	7	4.0	7	100	0	56	71	0	0	28	0.86
44742832--44742864	16	2.1	15	94	5	57	12	30	0	57	1.35
44745628--44745719	39	2.4	39	81	0	112	21	27	10	40	1.87
44746332--44746375	18	2.7	16	80	16	54	54	11	2	31	1.48
44756159--44756366	40	5.2	40	82	2	202	25	23	25	25	2.00
44756161--44756366	80	2.6	80	83	3	236	25	23	26	24	2.00
44764161--44764368	40	5.2	40	82	2	202	25	23	25	25	2.00
44764163--44764368	80	2.6	80	83	3	236	25	23	26	24	2.00
44769249--44769294	20	2.3	20	82	14	60	28	28	17	26	1.98
44779685--44779750	33	2.0	33	100	0	132	39	12	6	42	1.67
44785674--44785881	40	5.2	40	82	2	202	25	23	25	25	2.00
44785676--44785881	80	2.6	80	83	3	236	25	23	26	24	2.00
44793043--44793250	40	5.2	40	82	2	202	25	23	25	25	2.00
44793045--44793250	80	2.6	80	83	3	236	25	23	26	24	2.00
44794607--44794668	30	2.1	30	93	0	106	41	27	12	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44794832--44794948	31	3.9	31	75	8	107	44	29	10	15	1.79
44794828--44794948	61	2.0	61	91	0	197	45	28	10	14	1.79
44794828--44794920	30	3.0	32	78	7	120	46	30	9	13	1.76
44801806--44801852	16	2.9	16	80	0	58	48	19	21	10	1.78
44802067--44802194	29	4.4	29	90	3	195	25	15	29	29	1.96
44804431--44804621	47	4.1	47	90	0	292	34	12	28	25	1.92
44804475--44804549	23	3.2	23	64	23	57	30	10	32	26	1.90
44804591--44804725	48	2.8	48	88	0	198	32	7	30	29	1.85
44804872--44804980	37	2.9	37	91	0	173	23	18	30	27	1.98
44817435--44817618	40	4.6	40	82	2	228	24	25	23	26	2.00
44817429--44817618	80	2.4	80	84	6	251	25	25	23	25	2.00
44819340--44819399	32	2.0	29	96	0	84	25	16	10	48	1.77
44822034--44822317	40	7.1	40	93	1	446	26	27	23	23	2.00
44827373--44827548	46	3.8	46	77	12	198	19	20	30	29	1.97
44827372--44827541	93	1.8	93	94	0	304	20	20	30	28	1.98
44832887--44833142	40	6.5	40	92	4	387	25	28	23	22	1.99
44832887--44833142	79	3.2	79	90	6	378	25	28	23	22	1.99
44845194--44845323	40	3.2	40	84	4	174	22	24	29	23	1.99
44850651--44850816	40	4.2	39	79	9	169	26	22	27	23	2.00
44858631--44858779	78	1.9	77	85	6	203	27	22	26	22	1.99
44858631--44858793	39	4.2	39	80	8	181	26	22	26	23	2.00
44866109--44866169	26	2.3	26	94	0	104	31	3	3	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44866100--44866175	26	3.1	23	80	10	71	31	5	3	59	1.38
44866332--44866361	3	10.0	3	92	0	51	33	3	0	63	1.11
44876609--44876757	40	3.8	38	81	9	151	27	23	26	22	1.99
44878138--44878236	40	2.4	42	81	6	114	25	16	28	30	1.96
44882423--44882456	13	2.6	13	100	0	68	5	17	52	23	1.66
44883817--44884021	48	4.4	47	74	11	197	28	22	21	26	1.99
44889949--44890353	49	8.4	49	93	2	667	32	8	29	29	1.86
44889949--44890353	195	2.1	194	92	2	681	32	8	29	29	1.86
44909038--44909096	29	2.0	29	96	0	109	27	11	10	50	1.71
44914622--44914784	85	1.9	85	80	5	186	28	19	23	28	1.98
44929953--44930000	23	2.1	23	81	11	55	12	25	12	50	1.75
44937250--44937338	18	4.9	18	87	0	133	33	17	21	26	1.96
44937250--44937338	36	2.5	36	92	0	151	33	17	21	26	1.96
44944609--44944737	46	2.8	46	94	2	215	20	21	28	29	1.98
44949724--44949991	136	2.0	136	95	0	482	26	6	22	44	1.76
44950811--44951260	161	2.8	161	93	0	749	28	11	22	38	1.88
44956771--44956880	48	2.3	48	82	7	125	21	18	32	27	1.96
44962728--44962788	25	2.4	25	100	0	122	45	6	19	27	1.75
44963287--44963407	41	3.0	41	88	0	188	28	22	25	23	1.99
44963629--44963692	7	9.0	7	77	3	56	23	3	26	46	1.67
44963645--44963695	15	3.5	15	81	2	59	21	1	29	47	1.62
44964284--44964323	7	5.6	7	96	3	71	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44964323--44964358	8	4.6	8	93	6	65	88	0	0	11	0.50
44964284--44964365	15	5.7	15	84	8	73	73	0	0	26	0.84
44964434--44964473	19	2.2	17	91	8	62	75	0	2	22	0.93
44968592--44968729	43	3.2	43	92	0	231	25	21	29	23	1.99
44969404--44969444	23	1.9	21	85	14	57	56	7	0	36	1.27
44969688--44969730	2	21.5	2	100	0	86	48	0	0	51	1.00
44972831--44973009	47	3.8	45	76	11	148	22	28	18	29	1.98
44972831--44973009	94	1.9	94	84	2	243	22	28	18	29	1.98
44977990--44978039	21	2.4	20	86	6	73	34	26	14	26	1.94
44981461--44981628	40	4.2	40	87	2	223	23	22	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444