genome.fa.s10.2.7.7.80.10.50.1000.374.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  374  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108699588--108699802	27	8.0	27	84	1	243	35	19	20	24	1.95
108699615--108699806	54	3.6	54	87	0	269	35	18	21	24	1.95
108709379--108709695	50	6.6	49	75	15	177	23	29	18	28	1.98
108709376--108709695	46	6.7	47	74	15	223	22	30	18	28	1.98
108710386--108710410	12	2.1	12	100	0	50	60	16	8	16	1.58
108712845--108712884	15	2.6	15	84	4	53	77	0	7	15	0.98
108715510--108715606	48	2.0	48	100	0	194	28	16	8	46	1.76
108722763--108722802	2	20.0	2	100	0	80	50	0	0	50	1.00
108725874--108725981	44	2.4	44	87	3	144	29	23	13	33	1.93
108740534--108740576	19	2.2	19	83	4	50	72	2	0	25	0.97
108740533--108740586	21	2.6	22	77	8	60	72	3	0	24	1.01
108745473--108745512	18	2.2	18	86	0	53	47	5	32	15	1.66
108747966--108748080	45	2.6	44	79	6	124	44	15	19	20	1.87
108748062--108748230	45	3.8	45	86	0	212	39	17	19	24	1.92
108748019--108748217	90	2.2	89	80	5	204	40	17	19	23	1.91
108748062--108748233	90	1.9	90	86	0	245	38	17	19	23	1.92
108748065--108748263	90	2.2	90	81	3	213	41	17	19	22	1.90
108748245--108748359	45	2.5	45	83	4	133	46	14	18	20	1.84
108751277--108751366	17	5.2	17	74	12	76	28	32	22	16	1.96
108753556--108753580	2	12.5	2	100	0	50	48	0	0	52	1.00
108755018--108755057	4	10.0	4	94	0	53	42	25	7	25	1.80
108755035--108755100	16	4.1	16	77	14	73	33	18	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108755075--108755113	12	3.2	12	85	0	51	25	10	23	41	1.86
108755039--108755112	16	4.6	16	77	12	71	31	14	20	33	1.93
108755075--108755112	8	4.8	8	90	0	58	26	10	23	39	1.87
108763267--108763317	26	2.0	26	84	0	66	17	21	27	33	1.96
108767394--108767605	21	10.1	21	79	3	144	18	22	15	43	1.88
108767396--108767593	42	4.7	42	86	2	245	19	21	15	43	1.88
108767396--108767596	63	3.2	63	80	6	201	19	21	15	43	1.88
108767840--108767889	25	2.0	25	84	7	66	44	0	20	36	1.52
108782796--108782912	58	2.0	58	91	0	189	26	14	20	38	1.91
108784251--108784702	134	3.4	131	81	4	467	37	13	18	29	1.90
108784641--108784820	96	1.9	96	88	3	272	38	13	18	29	1.89
108791454--108791488	18	2.0	18	88	5	54	17	42	28	11	1.83
108791548--108791708	85	1.9	85	93	0	277	24	37	18	20	1.94
108823215--108823315	51	2.0	52	92	2	168	39	11	24	23	1.89
108828617--108828672	26	2.2	26	90	6	87	14	19	23	42	1.88
108847845--108847886	12	3.4	12	86	3	57	35	0	2	61	1.09
108847843--108847910	30	2.2	28	82	17	75	32	1	1	64	1.11
108858870--108858905	19	1.9	18	88	5	54	25	13	8	52	1.68
108859423--108859490	33	2.1	33	94	0	118	36	5	23	33	1.79
108860426--108860562	41	3.4	40	87	3	184	38	20	18	22	1.93
108860548--108860572	10	2.5	10	100	0	50	48	36	16	0	1.46
108860516--108860613	50	1.9	50	87	2	142	40	22	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108861391--108861427	15	2.5	15	91	4	58	45	16	2	35	1.61
108862508--108862559	19	2.7	20	84	6	79	28	38	0	32	1.57
108866131--108866172	21	2.0	21	90	0	66	28	19	52	0	1.46
108870353--108870529	80	2.2	80	83	0	228	35	20	16	26	1.94
108870368--108870523	40	3.9	40	85	0	204	34	20	17	26	1.95
108875224--108875265	7	6.0	7	100	0	84	28	14	0	57	1.38
108877132--108877182	18	2.8	18	90	0	84	60	35	0	3	1.15
108877479--108877517	17	2.3	17	86	8	53	17	10	0	71	1.12
108877569--108877623	13	4.0	13	79	11	56	72	3	0	23	1.00
108878206--108878250	11	3.9	11	80	11	54	35	0	4	60	1.17
108878309--108878371	24	2.5	25	79	5	65	44	9	1	44	1.46
108883059--108883083	13	1.9	13	100	0	50	16	4	16	64	1.44
108884027--108884151	49	2.5	49	87	3	162	26	20	29	24	1.99
108886140--108886197	21	2.8	21	78	17	68	48	0	0	51	1.00
108887745--108887790	13	3.5	13	88	8	58	63	0	2	34	1.07
108887740--108887822	23	3.5	22	78	12	76	65	0	3	31	1.10
108887740--108887820	12	6.8	12	74	20	64	65	0	3	30	1.10
108887750--108887862	20	5.8	19	74	14	81	61	0	5	32	1.25
108887754--108887828	15	5.0	14	74	17	62	65	0	5	29	1.15
108891178--108891208	15	2.1	15	100	0	62	48	19	19	12	1.81
108891324--108891382	15	4.3	15	74	24	58	33	1	20	44	1.62
108891318--108891382	20	3.2	20	95	2	112	33	1	20	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108893697--108893733	17	2.2	17	100	0	74	21	16	16	45	1.84
108894812--108895040	46	5.0	46	90	2	291	41	14	22	20	1.89
108894826--108895040	93	2.3	92	85	4	263	41	15	22	20	1.89
108902815--108903650	417	2.0	419	89	2	1270	39	12	9	38	1.76
108910775--108910805	15	2.1	14	94	5	53	0	9	0	90	0.46
108911555--108911733	43	4.2	43	89	2	261	27	32	17	21	1.96
108915809--108915924	7	16.1	7	68	15	51	37	37	0	23	1.61
108915810--108915907	15	6.7	15	67	18	64	38	36	1	23	1.62
108915987--108916107	41	3.0	40	90	4	172	19	23	22	33	1.97
108916137--108916174	12	3.2	12	92	0	67	44	28	15	10	1.80
108917235--108917306	19	3.7	20	83	5	94	56	5	0	37	1.22
108917236--108917320	39	2.1	41	86	6	120	54	4	0	41	1.21
108923026--108923438	47	8.7	47	94	1	619	28	30	7	32	1.86
108923101--108923176	22	3.3	22	66	16	64	26	31	10	31	1.90
108928176--108928244	24	2.9	24	95	0	120	37	5	8	47	1.58
108928188--108928232	14	3.5	14	74	22	53	37	6	8	46	1.61
108940524--108940565	12	3.3	12	90	6	57	42	0	0	57	0.99
108940533--108940567	2	18.5	2	88	11	56	45	0	0	54	0.99
108944065--108944113	23	2.1	22	85	7	62	65	4	0	30	1.11
108944072--108944135	32	2.1	28	83	11	74	59	1	1	37	1.16
108944255--108944306	18	2.9	18	83	11	63	61	0	0	38	0.96
108948793--108948840	14	3.4	14	88	2	69	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108948798--108948838	5	8.6	5	78	10	50	60	0	0	39	0.96
108948950--108949003	19	2.9	19	81	10	58	62	3	1	31	1.23
108950731--108951052	87	3.7	85	69	17	221	27	20	20	31	1.98
108950771--108951098	175	1.9	175	94	0	584	25	20	22	32	1.98
108962193--108962308	39	3.0	38	93	2	187	26	28	21	23	1.99
108966628--108966679	20	2.5	20	84	9	59	63	0	0	36	0.95
108966620--108966670	15	3.3	15	83	8	66	64	1	0	33	1.05
108966786--108966839	19	2.9	19	81	10	58	62	3	1	31	1.23
108972435--108972487	27	2.0	27	92	0	88	37	13	18	30	1.89
108972864--108972941	38	2.1	38	100	0	156	42	24	7	25	1.81
108974026--108974070	2	22.5	2	100	0	90	48	0	0	51	1.00
108974472--108974519	16	3.1	16	75	6	53	52	2	0	45	1.12
108974499--108974580	33	2.5	32	81	13	96	57	6	2	34	1.37
108974564--108974624	16	3.9	16	79	14	56	68	0	0	31	0.89
108974559--108974628	25	2.9	24	81	12	81	67	0	0	32	0.91
108974559--108974611	8	6.3	9	74	22	53	67	0	0	32	0.91
108975375--108975424	23	2.2	23	86	10	68	58	0	8	34	1.28
108977064--108977256	62	3.1	60	74	9	147	43	28	1	26	1.64
108977091--108977256	62	2.7	61	73	10	149	45	28	1	24	1.64
108980257--108980417	61	2.6	61	77	7	166	30	1	27	40	1.64
108980846--108980874	2	14.5	2	100	0	58	48	0	0	51	1.00
108989903--108989956	10	5.5	10	77	20	60	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108990092--108990148	16	3.9	15	74	17	57	66	5	0	28	1.13
108993973--108994015	15	2.9	15	82	0	50	46	2	13	37	1.57
108994093--108994122	15	2.0	15	93	0	51	56	0	13	30	1.37
108996589--108996772	67	2.8	64	77	8	194	28	16	30	23	1.96
108997834--108997864	2	15.5	2	100	0	62	48	0	0	51	1.00
109001544--109001619	25	3.0	25	77	9	82	40	19	15	23	1.90
109001571--109001666	26	3.7	26	79	5	77	38	23	17	19	1.93
109001612--109001670	27	2.2	27	93	0	100	37	23	20	18	1.94
109011104--109011141	17	2.3	17	86	4	51	55	0	7	36	1.29
109012611--109012643	13	2.6	13	90	4	50	72	0	27	0	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444