genome.fa.s10.2.7.7.80.10.50.1000.429.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  429  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124037646--124037734	42	2.2	40	87	4	124	42	5	17	33	1.73
124039954--124040020	18	3.7	18	77	0	71	35	13	17	32	1.89
124039997--124040055	18	3.3	18	78	4	57	30	11	18	38	1.87
124047312--124047345	15	2.3	15	100	0	68	61	5	0	32	1.20
124055031--124055059	13	2.1	14	93	6	51	58	0	0	41	0.98
124057792--124057819	2	14.0	2	100	0	56	50	0	0	50	1.00
124060929--124060959	15	2.1	15	100	0	62	32	19	0	48	1.49
124061853--124061887	18	1.9	18	88	0	52	25	0	0	74	0.82
124066908--124066951	22	2.0	21	91	4	70	34	0	0	65	0.93
124077471--124077557	3	29.0	3	75	9	52	31	6	3	58	1.41
124077747--124077796	21	2.4	21	86	0	73	26	8	0	66	1.19
124078925--124078960	18	2.1	17	94	5	63	25	16	5	52	1.65
124098078--124098171	39	2.4	39	87	0	125	32	14	20	31	1.93
124099855--124099913	31	1.9	31	83	13	77	35	15	10	38	1.81
124100214--124100278	30	2.2	30	86	2	87	36	9	1	52	1.43
124101105--124101143	21	2.0	21	85	10	55	28	5	5	61	1.39
124111945--124111999	24	2.3	23	79	14	67	21	9	3	65	1.37
124112003--124112079	36	2.3	34	81	14	97	25	3	7	62	1.40
124112133--124112174	22	2.0	22	85	4	59	40	0	4	54	1.21
124120877--124120934	26	2.3	23	73	21	55	51	0	1	46	1.11
124121046--124121095	22	2.3	22	82	10	66	50	0	4	46	1.20
124121227--124121265	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124123199--124123310	23	4.8	23	71	12	93	17	25	22	33	1.96
124123696--124123877	46	4.0	46	89	1	222	41	14	23	20	1.89
124123965--124124034	13	5.3	13	66	1	50	35	2	24	37	1.70
124125471--124125525	27	2.0	27	100	0	110	18	10	18	52	1.73
124127474--124127502	15	1.9	15	100	0	58	6	20	6	65	1.40
124140012--124140128	27	4.3	27	79	6	112	22	20	14	42	1.88
124140036--124140151	27	4.3	27	79	8	94	22	18	14	43	1.87
124140178--124140276	45	2.2	45	85	3	128	25	26	12	36	1.91
124140212--124140298	45	1.9	45	88	4	131	24	24	11	40	1.88
124142555--124142713	75	2.1	75	84	5	214	26	20	20	32	1.98
124144229--124144288	2	30.0	2	100	0	120	50	0	0	50	1.00
124144413--124144708	18	16.1	18	71	11	152	36	14	12	35	1.85
124144506--124144708	36	5.6	36	75	10	173	37	14	12	35	1.83
124144507--124144708	72	2.8	72	80	6	214	37	14	12	35	1.84
124144875--124144905	6	5.2	6	92	0	53	48	16	19	16	1.81
124154102--124154420	88	3.7	86	75	10	290	37	21	20	20	1.94
124156625--124156685	29	2.3	27	78	18	65	31	14	3	50	1.59
124159269--124159315	23	2.0	23	83	0	58	4	14	2	78	0.99
124159320--124159355	2	18.5	2	94	5	65	50	0	0	50	1.00
124160945--124161044	3	33.3	3	71	16	57	31	5	3	61	1.33
124161201--124161250	3	16.7	3	82	0	64	32	6	0	62	1.20
124161561--124161596	16	2.2	16	90	9	56	22	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124161678--124162082	217	1.8	217	81	5	501	33	13	15	37	1.86
124167233--124167264	2	16.5	2	93	6	57	53	0	0	46	1.00
124169655--124169686	16	2.0	16	100	0	64	37	31	12	18	1.88
124195421--124195458	19	2.0	19	94	0	67	34	10	23	31	1.89
124195727--124195762	2	18.0	2	94	0	63	52	0	0	47	1.00
124195722--124195762	10	4.0	10	93	3	55	53	0	0	46	1.00
124195927--124195959	2	16.5	2	100	0	66	48	0	0	51	1.00
124196354--124196393	19	2.0	20	86	13	57	77	2	5	15	1.04
124197041--124197100	21	2.9	21	84	0	66	40	13	28	18	1.88
124197065--124197104	21	1.9	21	100	0	80	32	10	35	22	1.87
124197784--124197822	20	1.9	21	89	5	62	46	12	0	41	1.42
124199694--124199726	12	2.9	12	86	13	52	9	6	9	75	1.18
124201316--124201375	25	2.2	28	82	11	81	56	3	0	40	1.16
124201326--124201379	5	11.4	5	78	11	60	59	1	0	38	1.08
124207882--124207932	20	2.5	20	83	0	66	52	9	11	25	1.68
124208538--124208623	15	5.9	14	76	12	59	26	6	0	66	1.17
124208544--124208577	14	2.3	15	90	5	52	26	5	0	67	1.13
124208544--124208602	29	2.0	29	81	12	68	27	8	0	64	1.22
124208570--124208615	15	2.9	15	90	6	65	26	6	0	67	1.15
124208579--124208649	21	3.2	24	77	20	82	29	8	0	61	1.25
124210535--124210590	27	2.1	27	96	0	103	35	28	10	25	1.89
124215015--124215065	21	2.3	22	87	12	70	60	0	11	27	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124215029--124215087	29	2.1	29	85	14	81	62	0	10	27	1.27
124215274--124215334	3	20.0	3	83	3	77	60	4	3	31	1.34
124216140--124216178	17	2.2	17	86	9	51	74	2	23	0	0.94
124219850--124219908	30	1.9	31	86	10	86	49	1	18	30	1.58
124222446--124222546	50	2.0	50	94	0	175	37	15	4	41	1.69
124224492--124224719	46	5.0	46	92	1	332	40	14	24	21	1.90
124225508--124225565	29	2.0	29	96	0	107	44	32	6	15	1.73
124228598--124228639	2	21.5	2	95	4	77	50	0	0	50	1.00
124236939--124236972	13	2.7	12	86	13	50	47	17	5	29	1.71
124240139--124240164	13	2.0	13	100	0	52	38	0	0	61	0.96
124240222--124240262	22	1.9	21	85	5	55	56	2	2	39	1.26
124240524--124240564	19	2.2	20	83	12	52	36	4	0	58	1.20
124244400--124244446	15	3.1	15	85	14	69	27	0	2	70	0.99
124244983--124245030	5	9.0	5	78	13	51	41	0	2	56	1.11
124244981--124245031	12	4.5	12	78	14	63	43	0	1	54	1.11
124246294--124246343	15	3.4	15	88	2	66	36	2	12	50	1.51
124246728--124246846	21	5.5	21	94	2	175	14	24	26	34	1.94
124247008--124247048	19	2.2	19	87	12	59	46	0	24	29	1.53
124248458--124248497	19	2.1	19	95	0	71	15	12	0	72	1.12
124252715--124252762	16	3.1	15	80	19	62	27	0	2	70	0.98
124253643--124253682	19	2.1	19	95	0	71	15	12	0	72	1.12
124254976--124255044	21	3.1	24	76	21	78	60	0	8	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124255009--124255054	15	2.9	15	87	6	56	65	0	6	28	1.17
124259191--124259230	19	2.1	19	85	4	53	52	7	0	40	1.30
124262718--124262756	11	3.6	10	81	18	51	61	0	0	38	0.96
124263246--124263302	23	2.5	22	78	13	62	31	0	5	63	1.17
124263254--124263303	22	2.3	22	83	10	59	34	0	4	62	1.14
124263255--124263303	21	2.3	21	83	13	57	34	0	4	61	1.15
124263804--124263843	16	2.6	16	88	4	55	42	7	0	50	1.30
124268476--124268506	16	1.9	16	93	0	53	41	12	16	29	1.85
124271301--124271341	21	2.0	21	90	0	64	29	21	29	19	1.98
124273253--124273283	16	1.9	16	93	0	53	41	12	16	29	1.85
124278989--124279058	35	2.0	35	100	0	140	48	14	17	20	1.81
124287426--124287506	22	3.7	22	88	0	108	3	11	34	50	1.56
124287426--124287511	11	7.8	11	82	0	91	4	10	32	52	1.56
124295675--124295722	23	2.1	23	100	0	96	58	20	4	16	1.55
124297224--124297422	80	2.4	83	85	8	262	36	10	7	46	1.66
124308028--124308097	30	2.3	30	95	0	131	41	2	0	55	1.14
124307999--124308097	19	5.0	19	65	20	51	43	2	0	54	1.11
124308291--124308332	20	2.0	21	95	4	77	54	0	4	40	1.21
124308295--124308342	20	2.3	20	85	7	60	58	2	4	35	1.29
124310517--124310598	41	2.0	41	97	0	155	43	17	10	28	1.82
124333384--124333423	21	1.9	21	89	0	62	32	0	5	62	1.17
124334644--124334693	20	2.5	20	83	3	66	38	2	2	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124335366--124335403	15	2.6	14	80	19	51	26	2	10	60	1.43
124344044--124344179	58	2.3	61	81	8	156	44	3	0	51	1.24
124346536--124346579	17	2.5	18	74	7	54	50	0	4	45	1.22
124346674--124346716	20	2.4	19	82	17	56	69	0	30	0	0.88
124351488--124351523	17	2.1	18	89	5	56	30	2	25	41	1.69
124354194--124354290	31	3.3	30	70	22	80	43	11	9	36	1.73
124354839--124354863	13	1.9	13	100	0	50	40	8	12	40	1.72
124359818--124359864	23	2.0	23	83	0	58	53	12	4	29	1.58
124360570--124360683	10	11.4	10	69	12	56	28	3	0	66	1.14
124360590--124360634	21	2.1	22	88	12	67	28	4	0	66	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444