genome.fa.s10.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  139  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36989297--36989335	19	2.1	19	100	0	78	35	7	25	30	1.84
36989369--36989454	45	1.9	45	90	0	136	24	12	23	39	1.89
36993064--36993162	28	3.5	28	87	4	119	27	15	27	30	1.96
36996211--36996252	15	2.8	15	96	0	75	14	14	38	33	1.86
37000847--37000879	17	1.9	17	100	0	66	36	24	15	24	1.93
37000883--37001112	27	8.6	27	83	2	266	41	21	12	24	1.88
37006167--37006342	46	3.8	46	79	12	216	29	29	20	20	1.98
37006174--37006343	93	1.8	93	96	0	313	28	29	20	21	1.98
37008582--37008615	17	1.9	17	88	5	50	11	29	44	14	1.81
37010869--37011087	40	5.6	40	83	6	261	22	23	29	24	1.99
37010870--37011087	80	2.8	78	87	5	298	22	23	29	24	1.99
37014377--37014487	41	2.7	41	81	1	134	19	27	17	35	1.94
37021658--37021945	41	7.0	41	85	0	378	20	29	15	35	1.93
37034141--37034177	15	2.7	14	84	15	51	16	2	16	64	1.40
37034137--37034177	13	2.9	15	86	10	52	17	2	14	65	1.37
37036246--37036320	26	2.8	27	83	4	89	29	10	22	37	1.88
37037765--37037872	26	4.2	26	93	0	189	36	24	7	32	1.83
37046831--37046866	2	18.5	2	94	5	65	52	0	0	47	1.00
37046826--37046925	13	7.9	12	68	18	51	56	3	4	37	1.34
37046968--37047024	27	2.1	27	83	0	69	47	3	10	38	1.55
37047273--37047312	19	2.0	20	86	13	57	65	7	0	27	1.20
37047468--37047527	31	1.9	32	86	3	86	56	8	3	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37048921--37049026	44	2.4	44	80	3	115	27	16	16	38	1.91
37049231--37049437	55	3.8	55	87	3	285	38	16	13	32	1.87
37049231--37049437	109	1.9	109	87	2	308	38	16	13	32	1.87
37049397--37049627	86	2.7	85	87	5	324	38	18	16	27	1.92
37049632--37049950	79	4.0	78	76	15	315	34	20	17	27	1.95
37062787--37062830	22	2.0	22	95	0	79	15	20	9	54	1.68
37063287--37063472	40	4.6	39	73	6	122	29	20	21	28	1.98
37063596--37063650	28	1.9	29	82	10	69	34	0	7	58	1.26
37063993--37064058	28	2.4	28	92	0	96	30	0	36	33	1.58
37064004--37064099	28	3.4	27	88	5	129	28	1	37	33	1.64
37064021--37064100	14	5.6	14	69	8	63	27	1	35	36	1.65
37064004--37064110	28	3.8	28	88	6	128	28	0	35	34	1.64
37064170--37064273	7	14.6	7	72	11	50	20	0	33	46	1.51
37064170--37064224	21	2.5	22	77	8	60	21	0	25	52	1.47
37064211--37064272	21	2.9	22	80	7	74	17	0	40	41	1.50
37064531--37064605	26	2.9	27	86	4	109	45	5	4	45	1.45
37064719--37064753	17	2.0	17	88	5	52	34	0	0	65	0.93
37065259--37065297	13	2.9	14	84	7	62	25	33	0	41	1.56
37065349--37065404	27	2.0	28	82	3	69	16	39	17	26	1.91
37067660--37067709	23	2.2	23	100	0	100	34	16	16	34	1.90
37067842--37068811	241	4.0	241	97	0	1796	34	17	14	33	1.90
37069248--37069375	9	13.6	9	75	9	112	48	20	0	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37069261--37069373	57	2.0	57	87	0	163	47	22	0	29	1.57
37069265--37069342	39	2.0	39	92	0	129	48	20	0	30	1.50
37074925--37074970	21	2.2	21	88	0	65	26	19	54	0	1.44
37079302--37079369	34	2.0	34	100	0	136	29	11	23	35	1.90
37079921--37080139	40	5.4	40	85	2	251	26	23	26	23	2.00
37079921--37080139	120	1.8	121	85	3	307	26	23	26	23	2.00
37079917--37080165	80	3.1	80	81	1	203	27	23	25	23	2.00
37082126--37082175	4	12.5	4	91	0	64	42	6	2	50	1.38
37082126--37082175	6	8.3	6	86	0	64	42	6	2	50	1.38
37092428--37092646	40	5.4	40	84	2	251	26	23	26	23	2.00
37092428--37092646	120	1.8	121	86	3	316	26	23	26	23	2.00
37094632--37094675	2	22.0	2	85	0	61	43	4	2	50	1.35
37096985--37097039	2	29.0	2	78	10	53	52	7	0	40	1.29
37096985--37097036	22	2.3	23	90	6	88	53	7	0	38	1.30
37097558--37097594	11	3.2	12	88	11	60	45	0	54	0	1.00
37097556--37097605	11	4.5	11	82	9	57	44	0	56	0	0.99
37097866--37097901	14	2.5	15	95	4	65	16	5	13	63	1.47
37097864--37097938	30	2.4	30	82	6	96	12	6	18	62	1.50
37097865--37097903	15	2.6	16	84	16	64	15	5	15	64	1.46
37097864--37097938	32	2.4	31	82	10	98	12	6	18	62	1.50
37097865--37097932	15	4.5	15	72	24	63	13	5	19	61	1.51
37098337--37098442	35	3.0	35	95	0	194	22	12	49	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37099151--37099297	54	2.9	50	80	12	183	34	19	16	29	1.94
37099354--37099942	147	4.1	140	92	4	980	31	20	15	32	1.94
37099453--37099942	70	6.9	70	94	3	863	31	20	15	32	1.94
37099354--37099942	217	2.7	217	97	2	1093	31	20	15	32	1.94
37114559--37114635	21	3.8	18	73	21	64	58	2	5	33	1.34
37114852--37114890	2	19.5	2	89	0	60	48	2	2	46	1.29
37114935--37114984	2	26.5	2	80	11	52	54	6	0	40	1.25
37115508--37115556	11	4.5	11	87	5	55	44	0	55	0	0.99
37115810--37115845	14	2.5	15	95	4	65	16	5	13	63	1.47
37115809--37115847	15	2.6	16	84	16	64	15	5	15	64	1.46
37115808--37115878	31	2.3	29	79	13	79	14	5	16	63	1.48
37116283--37116388	35	3.0	35	92	0	176	22	11	48	17	1.79
37116893--37116919	14	1.9	14	100	0	54	14	14	22	48	1.81
37121622--37121669	18	2.8	18	81	6	64	25	2	2	70	1.09
37125251--37125299	22	2.2	23	85	10	66	38	4	30	26	1.75
37131497--37131549	2	26.5	2	92	0	88	3	0	45	50	1.19
37136994--37137089	49	2.0	49	85	2	131	38	15	10	35	1.82
37149932--37150002	16	4.4	16	81	0	88	33	7	29	29	1.84
37149932--37150002	32	2.2	32	89	0	106	33	7	29	29	1.84
37149984--37150077	44	2.1	44	86	4	125	31	6	26	35	1.82
37159322--37159464	39	3.6	39	88	0	187	23	31	22	23	1.98
37161889--37161924	5	7.2	5	93	0	63	36	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37175464--37175687	48	4.7	48	88	2	290	25	30	17	26	1.97
37179183--37179333	40	3.8	40	77	13	134	27	23	26	22	2.00
37179220--37179349	40	3.2	40	77	4	138	24	23	27	23	2.00
37187846--37188012	40	4.2	40	81	2	176	24	27	22	25	2.00
37187862--37188012	80	1.9	79	83	6	198	23	27	22	25	2.00
37195856--37196022	40	4.2	40	81	2	176	24	27	22	25	2.00
37195872--37196022	80	1.9	79	83	6	198	23	27	22	25	2.00
37204123--37204161	19	2.1	19	90	0	60	28	23	10	38	1.87
37205711--37205735	12	2.1	12	100	0	50	52	8	8	32	1.60
37207290--37207680	47	8.4	48	69	12	239	24	29	18	27	1.98
37207409--37207680	94	3.0	91	87	7	351	23	30	18	27	1.98
37211301--37211466	46	3.6	46	76	15	178	26	18	30	24	1.98
37216629--37216850	110	2.0	110	100	0	444	18	28	27	24	1.98
37229004--37229073	27	2.5	28	86	2	97	27	14	25	32	1.94
37236795--37236864	27	2.5	28	86	2	97	27	14	25	32	1.94
37238877--37238979	37	2.8	37	83	0	125	29	25	16	29	1.97
37244077--37244151	37	2.0	37	100	0	150	26	21	5	46	1.72
37250967--37251308	9	38.3	9	79	4	354	30	0	22	46	1.56
37250967--37251308	53	6.2	53	82	8	373	30	0	22	46	1.56
37250969--37251303	62	5.5	61	84	7	341	30	0	22	46	1.57
37253241--37253382	40	3.5	40	79	3	135	26	27	21	23	1.99
37254100--37254129	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37257892--37257980	29	3.1	29	77	9	83	46	29	0	24	1.53
37258153--37258241	14	6.2	14	75	8	81	38	43	0	17	1.50
37258154--37258229	22	3.5	22	80	1	73	38	44	0	17	1.49
37258153--37258223	7	9.9	7	78	6	70	36	46	0	16	1.48
37258182--37258285	28	3.7	28	80	3	93	41	38	2	17	1.64
37260904--37260941	19	2.0	19	94	0	67	39	26	5	28	1.78
37269253--37269298	23	2.0	23	100	0	92	39	4	43	13	1.63
37285323--37285424	29	3.5	29	98	0	195	38	14	23	23	1.92
37287049--37287097	22	2.2	22	96	0	89	38	10	22	28	1.87
37294294--37294399	31	3.2	31	64	21	79	33	12	21	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444