genome.fa.s10.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  197  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55119425--55119673	94	2.6	94	96	1	444	27	30	8	33	1.86
55126395--55126437	22	1.9	23	90	4	70	20	2	53	23	1.57
55131026--55131103	30	2.6	30	93	0	138	21	34	23	20	1.97
55131993--55132138	50	3.0	50	82	4	172	24	25	19	30	1.98
55134782--55134916	53	2.5	55	77	11	136	23	22	15	37	1.93
55134796--55134978	55	3.4	53	76	8	172	24	23	15	36	1.94
55134957--55135078	47	2.6	47	92	5	210	26	24	13	35	1.93
55134957--55135211	47	5.5	46	80	9	193	23	25	17	33	1.96
55140769--55140839	16	4.4	16	94	0	124	35	7	29	28	1.83
55140821--55140914	44	2.1	46	88	7	140	34	5	25	35	1.79
55141018--55141143	58	2.2	58	88	2	182	53	3	0	43	1.16
55141005--55141170	58	2.9	56	83	9	169	53	3	1	42	1.24
55141018--55141179	57	2.8	57	83	10	154	54	3	0	41	1.23
55145378--55145423	21	2.2	21	84	0	56	50	2	0	47	1.13
55146295--55146460	46	3.6	45	78	13	185	30	28	19	22	1.98
55146296--55146466	93	1.8	93	92	0	288	30	28	19	21	1.98
55146341--55146482	46	3.1	45	71	18	114	29	28	19	23	1.98
55149621--55149689	28	2.5	28	90	2	113	43	26	10	20	1.83
55154005--55154190	55	3.4	54	80	7	191	22	23	17	36	1.95
55154005--55154198	54	3.6	54	79	4	203	22	23	17	37	1.94
55154177--55154298	47	2.6	47	93	0	199	26	23	13	36	1.91
55167986--55168102	48	2.4	48	89	0	180	25	19	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55171514--55171608	49	1.9	49	89	0	145	26	17	27	28	1.98
55172476--55172533	22	2.7	21	84	7	71	34	5	18	41	1.73
55172648--55172795	74	2.0	74	95	0	269	21	18	14	45	1.85
55177673--55177717	23	2.0	22	82	4	54	40	4	17	37	1.70
55178418--55178492	36	2.1	36	94	0	132	25	9	30	34	1.87
55184220--55184362	48	3.0	47	90	3	214	29	19	23	27	1.98
55184219--55184383	48	3.4	47	85	5	161	30	19	23	26	1.98
55186415--55186505	29	3.2	30	81	9	111	25	14	32	27	1.94
55191058--55191207	67	2.2	67	81	8	171	32	17	28	21	1.96
55191082--55191265	67	2.8	64	77	8	194	29	17	29	22	1.97
55195491--55195640	67	2.2	67	81	8	171	32	17	28	21	1.96
55195515--55195698	67	2.8	64	77	8	194	29	17	29	22	1.97
55200603--55200627	2	12.5	2	100	0	50	48	0	0	52	1.00
55202086--55202115	13	2.3	13	94	0	51	56	0	6	36	1.26
55205003--55205279	139	2.0	139	87	2	396	38	18	20	22	1.94
55207527--55207567	21	2.0	20	95	4	73	36	48	4	9	1.58
55208005--55208044	18	2.2	19	86	8	57	22	42	22	12	1.87
55220080--55220182	37	2.8	37	93	0	179	25	32	19	23	1.98
55220323--55220563	48	5.0	48	95	0	421	30	28	6	34	1.82
55224105--55224262	56	2.8	57	89	1	228	31	29	18	21	1.97
55224105--55224258	28	5.5	27	77	7	146	31	28	18	21	1.97
55224290--55224501	40	5.3	40	97	0	388	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55228847--55228878	14	2.3	14	100	0	64	40	0	21	37	1.54
55237148--55237278	40	3.3	40	89	3	185	23	22	27	26	1.99
55237148--55237312	79	2.1	79	80	6	183	26	21	26	26	1.99
55238744--55238775	2	16.0	2	100	0	64	50	0	0	50	1.00
55238911--55239143	123	1.9	123	80	5	274	31	16	18	33	1.93
55241712--55242012	96	3.2	96	93	0	489	31	8	31	29	1.87
55241712--55242012	47	6.3	47	93	2	467	31	8	31	29	1.87
55246447--55246569	22	5.3	22	64	27	67	31	13	29	25	1.94
55246426--55246747	47	7.0	47	87	4	442	32	12	29	25	1.92
55246434--55246708	135	2.0	135	93	0	469	32	13	28	25	1.93
55246721--55246931	46	4.6	46	93	0	359	35	10	31	22	1.88
55249464--55249525	18	3.0	21	76	23	62	4	25	1	67	1.19
55249483--55249525	6	7.2	6	78	0	50	2	23	0	74	0.93
55249481--55249525	18	2.5	19	92	7	76	2	24	0	73	0.95
55249550--55249618	21	3.5	19	79	14	68	7	20	2	69	1.25
55252124--55252158	10	3.5	10	88	0	52	37	22	25	14	1.92
55252121--55252168	20	2.4	20	75	0	60	31	18	29	20	1.97
55254942--55255040	28	3.5	28	81	9	112	29	25	16	29	1.96
55262625--55262723	28	3.5	28	81	9	112	29	25	16	29	1.96
55265459--55265534	37	2.1	37	97	0	143	22	26	15	35	1.94
55275985--55276097	27	4.2	27	80	7	106	38	21	22	18	1.94
55282044--55282185	40	3.5	40	83	1	124	27	23	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55282083--55282211	40	3.2	39	84	6	152	24	22	27	25	2.00
55285462--55285631	40	4.2	40	85	3	225	21	28	24	25	1.99
55293558--55293767	40	5.2	40	88	2	305	21	28	24	25	1.99
55301415--55301493	30	2.6	31	80	11	92	11	17	15	55	1.68
55301424--55301503	15	5.4	15	77	7	83	10	17	13	58	1.62
55303421--55303593	46	3.7	46	79	10	199	21	19	27	32	1.97
55303418--55303588	93	1.8	93	92	0	288	21	19	28	31	1.97
55307973--55308040	28	2.5	28	92	2	111	20	10	25	44	1.83
55318382--55318494	27	4.2	26	77	8	77	38	17	11	32	1.86
55318397--55318485	27	3.3	27	82	4	92	38	16	12	32	1.86
55318480--55318539	26	2.3	26	85	0	75	38	26	5	30	1.78
55318491--55318555	26	2.5	26	92	0	103	29	29	4	36	1.77
55318514--55318584	37	1.9	36	88	2	106	25	30	5	38	1.79
55318550--55318684	27	5.0	27	82	7	157	31	20	7	41	1.79
55318550--55318684	54	2.5	54	81	2	173	31	20	7	41	1.79
55318634--55318882	27	9.1	27	77	6	146	38	19	8	32	1.83
55318661--55318882	81	2.7	80	74	8	200	40	19	9	31	1.83
55318661--55318800	54	2.6	54	85	4	192	39	21	8	30	1.83
55318674--55318891	27	8.0	27	79	6	154	39	18	10	32	1.84
55320164--55320211	25	1.9	25	86	0	69	33	25	16	25	1.96
55320254--55320314	20	3.0	20	90	0	95	34	13	21	31	1.91
55320364--55320481	24	5.0	24	94	2	193	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55320364--55320481	47	2.5	48	92	1	193	27	22	22	27	1.99
55320364--55320507	71	2.0	72	86	4	202	27	22	23	26	1.99
55320364--55320506	24	6.0	24	90	4	191	27	22	23	26	2.00
55320698--55320760	31	2.0	31	90	0	99	34	15	25	23	1.95
55323542--55323879	27	12.6	27	87	3	450	27	23	9	39	1.86
55323552--55323879	161	2.0	161	88	2	480	27	23	9	39	1.86
55325117--55325164	25	1.9	25	86	0	69	33	27	16	22	1.96
55325207--55325246	20	2.0	20	100	0	80	35	10	20	35	1.86
55325297--55325401	24	4.4	24	90	6	160	29	20	23	25	1.99
55325297--55325401	47	2.2	48	89	6	160	29	20	23	25	1.99
55325297--55325415	24	5.0	24	87	5	143	29	21	22	26	1.99
55325607--55325670	31	2.1	31	96	0	119	39	15	21	23	1.92
55327834--55327897	31	2.1	31	90	0	101	25	23	15	35	1.94
55328105--55328281	24	7.4	24	90	3	259	27	21	22	29	1.99
55328112--55328281	47	3.6	47	91	2	277	27	20	22	29	1.98
55328105--55328281	71	2.5	72	88	2	268	27	21	22	29	1.99
55328339--55328415	9	7.9	9	72	16	64	35	20	9	35	1.85
55328335--55328417	20	4.2	20	96	0	157	32	19	12	36	1.88
55328335--55328406	11	7.1	11	70	17	66	31	19	12	36	1.89
55328454--55328501	25	1.9	25	86	0	69	25	14	25	35	1.94
55331837--55331948	43	2.6	43	88	0	170	33	29	25	12	1.92
55331946--55332104	38	4.1	38	82	3	192	30	23	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55334211--55334247	19	1.9	19	100	0	74	37	21	5	35	1.77
55336629--55336760	43	3.1	42	90	3	194	30	30	25	14	1.95
55336732--55336933	38	5.3	38	86	2	269	30	25	21	22	1.99
55341383--55341494	43	2.6	43	85	0	161	29	28	26	15	1.96
55341487--55341686	38	5.2	38	81	4	224	31	23	22	23	1.98
55341490--55341686	37	5.2	38	79	6	202	31	22	21	23	1.98
55345100--55345224	44	2.9	44	82	9	125	24	26	24	25	2.00
55345551--55345662	43	2.6	43	97	0	206	28	33	27	10	1.90
55345655--55345855	38	5.3	38	89	1	303	30	26	21	21	1.98
55345660--55345855	77	2.6	76	88	1	302	30	25	21	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444