Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  372  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108053163--108053329
40
4.2
40
78
6
160
25
22
27
24
2.00
108059874--108059982
56
2.0
54
82
8
132
37
18
16
27
1.92
108061174--108061340
40
4.2
40
78
6
160
25
22
27
24
2.00
108070452--108070618
40
4.2
40
79
6
169
26
22
26
24
2.00
108077152--108077263
56
2.1
53
81
11
129
37
17
16
27
1.92
108078454--108078620
40
4.2
40
80
3
167
25
21
27
25
1.99
108078454--108078604
80
1.9
79
84
4
205
25
21
27
24
1.99
108087047--108087071
13
1.9
13
100
0
50
24
4
0
72
1.02
108088720--108088765
24
1.9
24
86
0
65
34
10
21
32
1.88
108097300--108097341
16
2.5
17
88
3
59
59
2
2
35
1.23
108098339--108098439
34
2.8
36
82
4
98
23
19
25
30
1.98
108098378--108098447
34
2.1
34
94
0
122
20
21
25
32
1.97
108108096--108108133
2
19.0
2
100
0
76
50
0
0
50
1.00
108119444--108119471
12
2.3
12
100
0
56
0
7
0
92
0.37
108120774--108120805
16
2.0
16
93
0
55
28
21
6
43
1.77
108127401--108127467
18
3.7
18
75
0
53
31
16
11
40
1.85
108127592--108127618
6
4.5
6
100
0
54
48
14
18
18
1.82
108128021--108128064
3
14.7
3
100
0
88
65
0
0
34
0.93
108130211--108130242
2
16.0
2
100
0
64
50
0
0
50
1.00
108130514--108130543
15
2.0
15
93
0
51
56
0
0
43
0.99
108132028--108132082
25
2.2
25
81
12
69
41
0
9
49
1.34
108140821--108140852
16
2.0
16
93
0
55
40
40
6
12
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108141488--108141529
16
2.6
16
88
0
57
0
52
0
47
1.00
108147048--108147119
23
3.0
25
70
23
66
33
5
1
59
1.29
108147058--108147121
26
2.3
29
81
7
80
32
4
1
60
1.26
108149548--108149618
26
2.8
26
95
2
126
52
0
33
14
1.42
108149885--108149955
35
2.0
35
100
0
142
28
16
25
29
1.97
108150686--108150818
45
2.9
46
85
2
169
46
15
17
20
1.84
108150895--108150982
27
3.3
27
75
0
95
37
13
26
22
1.91
108165204--108165245
20
2.1
20
86
0
57
47
0
7
45
1.30
108167385--108167428
13
3.0
15
84
15
65
59
0
0
40
0.98
108167388--108167422
8
4.4
8
92
0
61
60
0
0
40
0.97
108167489--108167521
14
2.4
14
90
5
50
75
0
24
0
0.80
108171475--108171631
43
3.7
42
76
5
111
34
24
17
24
1.96
108175722--108175879
78
2.0
78
91
0
253
39
20
10
29
1.85
108178529--108178656
44
3.0
42
74
11
125
35
25
17
21
1.95
108178540--108178671
44
3.0
42
72
14
117
36
24
16
22
1.94
108183871--108183918
16
3.1
16
78
3
53
64
4
0
31
1.12
108183871--108183913
21
2.0
21
82
8
52
65
2
0
32
1.06
108183869--108183927
29
2.0
29
83
6
75
66
3
1
28
1.18
108193127--108193161
7
5.0
7
85
0
52
57
0
0
42
0.99
108205817--108205864
25
1.9
25
87
8
71
27
10
0
62
1.27
108207735--108207784
22
2.2
22
86
10
66
58
2
0
40
1.10
108210285--108210335
26
1.9
27
88
4
77
62
3
0
33
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108210304--108210333
15
1.9
16
93
6
53
70
0
0
30
0.88
108210287--108210342
25
2.1
27
80
6
62
67
3
1
26
1.16
108211414--108211474
29
2.1
29
81
6
70
36
1
1
60
1.16
108212611--108212648
18
2.1
18
95
0
67
44
47
0
7
1.32
108212625--108212649
13
1.9
13
100
0
50
40
48
0
12
1.40
108212677--108212716
20
2.0
20
85
0
53
72
10
0
17
1.11
108212743--108212792
9
5.6
9
90
0
55
26
8
22
44
1.80
108212734--108212792
27
2.2
27
84
0
73
27
8
20
44
1.80
108212742--108212792
18
2.8
18
84
0
66
25
7
21
45
1.79
108224601--108224648
24
2.0
24
100
0
96
41
25
12
20
1.87
108224706--108224766
24
2.5
24
94
5
106
50
3
24
21
1.63
108226312--108226392
42
1.9
42
87
0
117
29
28
19
22
1.98
108226906--108226947
2
21.0
2
100
0
84
50
0
0
50
1.00
108234375--108234767
3
128.3
3
67
20
117
61
3
4
30
1.33
108235086--108235116
5
6.2
5
92
0
53
3
22
54
19
1.58
108236252--108236437
96
1.9
97
84
4
252
25
21
20
31
1.98
108236348--108236476
45
2.9
45
79
3
147
27
24
19
28
1.98
108236227--108236481
140
1.8
139
89
0
402
27
23
20
29
1.99
108236626--108237015
45
8.8
45
71
10
230
25
25
17
30
1.97
108236626--108237015
178
2.2
178
86
1
541
25
25
17
30
1.97
108236446--108236837
133
2.9
133
86
3
504
25
26
18
29
1.98
108243691--108243741
20
2.5
20
87
6
68
74
1
5
17
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108243795--108243849
24
2.3
25
79
20
64
60
1
3
34
1.25
108243954--108244425
3
155.3
3
70
17
180
61
2
5
29
1.34
108245715--108245758
2
22.0
2
90
9
72
47
2
0
50
1.13
108246361--108246412
23
2.4
22
75
15
54
25
0
7
67
1.17
108247697--108247731
2
17.5
2
100
0
70
48
0
0
51
1.00
108249878--108249969
44
2.1
44
83
4
114
19
20
22
36
1.95
108250347--108250371
12
2.1
12
100
0
50
48
0
16
36
1.46
108252528--108252561
14
2.4
14
95
5
59
73
0
0
26
0.83
108252804--108252862
30
1.9
31
86
3
84
27
18
3
50
1.62
108255093--108255138
20
2.3
20
96
0
83
50
8
23
17
1.74
108257194--108257226
13
2.5
13
100
0
66
30
6
15
48
1.69
108259798--108259825
2
14.0
2
100
0
56
50
0
0
50
1.00
108261593--108261639
24
2.0
24
91
0
76
48
6
4
40
1.48
108262261--108262308
16
2.9
16
84
6
51
54
0
2
43
1.12
108271637--108271720
43
2.0
43
90
0
132
38
17
20
23
1.93
108281051--108281075
12
2.1
12
100
0
50
16
0
0
84
0.63
108289127--108289441
152
2.0
159
83
6
403
40
4
8
46
1.54
108289947--108289998
20
2.5
20
87
3
77
51
11
11
25
1.71
108296233--108296300
33
2.1
33
100
0
136
30
11
13
44
1.79
108301826--108302411
134
4.4
134
82
3
651
31
16
13
37
1.88
108301821--108302396
268
2.1
268
84
1
744
31
16
14
38
1.88
108302364--108302447
36
2.3
36
83
4
98
30
15
17
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108308775--108308857
18
4.8
18
69
21
70
44
2
3
49
1.32
108309078--108309130
21
2.5
21
93
0
88
30
37
9
22
1.86
108309947--108310008
30
2.1
30
96
0
115
58
11
3
27
1.48
108310038--108310080
22
2.0
22
81
9
52
58
9
11
20
1.61
108310834--108310931
43
2.2
44
78
1
108
25
16
24
33
1.96
108314171--108314237
32
2.1
32
83
5
82
38
25
10
25
1.87
108314841--108315175
170
2.0
170
94
1
591
29
17
20
32
1.95
108320366--108320430
29
2.2
29
91
5
105
21
3
56
18
1.54
108325239--108325286
23
2.1
23
100
0
96
39
20
12
27
1.89
108325409--108325545
35
3.7
39
75
12
130
32
22
12
32
1.91
108328511--108328544
16
2.1
16
88
5
50
47
0
23
29
1.52
108328906--108328942
9
4.1
9
92
0
65
29
10
13
45
1.77
108334098--108334234
35
3.7
39
75
12
130
32
22
12
32
1.91
108339255--108339302
22
2.2
22
88
3
80
14
37
12
35
1.84
108339469--108339556
30
2.9
30
89
3
124
18
25
32
23
1.97
108342473--108342549
28
2.8
28
87
0
118
31
10
27
31
1.90
108349777--108349835
23
2.6
23
78
5
66
15
16
27
40
1.89
108353232--108353263
14
2.3
14
94
0
55
40
25
9
25
1.85
108367043--108367085
16
2.6
16
77
3
50
60
2
2
34
1.22
108372307--108372607
38
7.2
38
71
18
224
30
23
14
30
1.95
108372352--108372647
47
6.7
47
77
13
322
30
22
14
31
1.94
108372314--108372605
85
3.4
85
96
0
530
30
23
15
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108372530--108372647
48
2.5
47
86
4
166
30
22
13
33
1.93
108375356--108375397
15
2.8
15
88
0
66
52
14
16
16
1.75
108376360--108376399
21
1.9
21
100
0
80
20
20
10
50
1.76
108378663--108378916
38
6.2
38
77
15
265
30
24
15
29
1.96
108378668--108378824
85
1.8
85
94
0
278
29
25
15
29
1.96
108378663--108378916
123
2.1
123
95
0
463
30
24
15
29
1.96
108378831--108378953
48
2.6
48
89
1
185
31
24
14
29
1.95
108379377--108379432
29
1.9
29
85
0
76
73
5
14
7
1.23
108379557--108379607
25
2.1
24
85
3
66
0
15
9
74
1.06
108380332--108380722
134
2.9
134
91
0
631
24
22
22
30
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444