genome.fa.s10.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  158  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43249482--43249539	27	2.2	27	87	9	84	50	13	8	27	1.71
43252703--43252985	141	2.0	141	99	0	557	39	20	12	28	1.88
43254243--43254443	27	7.6	26	77	6	172	32	27	12	27	1.93
43254243--43254443	53	3.8	53	79	6	219	32	27	12	27	1.93
43254242--43254420	80	2.3	79	94	1	304	32	27	12	27	1.92
43254581--43254670	32	2.8	33	83	9	114	42	26	2	28	1.67
43254789--43254836	2	24.0	2	100	0	96	50	0	0	50	1.00
43260485--43260529	20	2.2	20	88	0	63	48	2	13	35	1.54
43261840--43261881	18	2.3	18	88	8	59	33	2	16	47	1.60
43266017--43266136	59	2.0	59	100	0	240	33	8	27	30	1.86
43268953--43269001	24	1.9	26	88	12	75	36	4	10	48	1.56
43273027--43273095	28	2.5	28	95	2	122	18	10	27	43	1.82
43274724--43274761	20	1.9	20	88	0	58	52	10	2	34	1.50
43281020--43281088	28	2.5	28	95	2	122	18	10	27	43	1.82
43285007--43285230	40	5.6	40	86	5	269	25	20	27	26	1.99
43285013--43285253	79	3.0	79	80	11	260	26	19	26	27	1.99
43286621--43286743	48	2.6	48	96	0	219	30	25	18	25	1.98
43300689--43300874	27	6.9	27	83	0	228	26	18	18	36	1.94
43303077--43303188	43	2.6	42	79	5	118	30	21	20	27	1.98
43307342--43307425	6	13.7	6	73	18	66	48	15	16	19	1.81
43307354--43307425	25	2.9	24	82	14	85	48	15	16	19	1.81
43307351--43307425	31	2.4	31	88	0	105	49	14	17	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43307548--43307607	27	2.3	26	85	2	75	35	20	23	21	1.96
43307604--43307629	2	13.0	2	100	0	52	50	0	0	50	1.00
43307882--43308167	81	3.5	81	89	0	419	41	7	20	30	1.79
43307882--43308167	27	10.6	27	88	0	374	41	7	20	30	1.79
43308179--43308371	27	7.2	26	70	16	92	29	10	22	37	1.88
43308172--43308441	81	3.4	81	76	9	248	30	10	21	37	1.87
43308172--43308468	54	5.5	54	74	9	191	30	10	21	37	1.88
43308234--43308490	27	9.6	27	76	8	188	29	11	21	38	1.88
43308238--43308488	133	1.9	133	80	4	301	29	11	20	37	1.88
43311119--43311276	40	4.0	40	81	3	167	24	22	27	25	2.00
43311123--43311276	80	1.9	80	84	7	206	23	23	27	25	2.00
43314249--43314542	27	10.9	27	87	0	363	42	8	19	30	1.80
43314249--43314577	81	4.1	80	80	7	326	40	8	20	30	1.82
43314539--43314808	81	3.4	81	78	10	293	30	10	22	37	1.87
43314556--43314808	27	9.4	27	74	7	131	30	10	21	37	1.87
43314546--43314774	54	4.3	53	75	5	169	28	10	23	37	1.87
43314600--43314857	27	9.6	27	75	6	186	29	10	21	38	1.87
43319891--43319929	18	2.1	18	85	4	51	79	5	15	0	0.90
43321167--43321313	40	3.7	40	82	0	132	27	23	25	23	2.00
43321208--43321334	40	3.2	39	84	8	150	23	25	28	22	1.99
43327929--43327976	20	2.3	21	82	10	62	81	4	14	0	0.84
43329183--43329329	40	3.7	40	82	0	132	27	23	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43329224--43329350	40	3.2	39	84	8	150	23	25	28	22	1.99
43344388--43344518	30	4.5	30	86	8	171	32	13	25	28	1.94
43344388--43344518	58	2.2	58	86	4	174	32	13	25	28	1.94
43353459--43353589	30	4.5	30	86	8	171	32	13	25	28	1.94
43353459--43353589	58	2.2	58	86	4	174	32	13	25	28	1.94
43361893--43362077	40	4.6	39	84	5	212	23	22	28	25	2.00
43361894--43362113	79	2.8	79	80	8	243	25	22	27	25	2.00
43366938--43367112	49	3.7	49	89	4	259	28	30	7	33	1.85
43375101--43375127	11	2.5	11	100	0	54	37	7	11	44	1.68
43376935--43377033	28	3.5	28	81	9	112	29	25	16	29	1.96
43379648--43379796	80	1.9	80	81	2	183	22	30	24	22	1.99
43379689--43379796	40	2.7	38	85	8	128	21	29	25	23	1.99
43386233--43386405	40	4.4	40	90	3	255	23	21	28	25	1.99
43386231--43386405	79	2.2	78	88	6	255	23	22	28	25	1.99
43394302--43394478	40	4.5	40	91	2	270	23	22	28	25	1.99
43398134--43398301	40	4.2	40	80	3	196	25	22	27	25	2.00
43401308--43401490	40	4.6	40	83	4	226	25	23	26	25	2.00
43401308--43401490	80	2.3	80	87	1	251	25	23	26	25	2.00
43403279--43403304	7	3.7	7	100	0	52	57	15	0	26	1.38
43412582--43412796	29	7.4	29	80	7	172	37	10	26	25	1.89
43412639--43412955	58	5.5	57	71	10	146	38	13	25	22	1.90
43412582--43412825	116	2.1	114	84	6	312	37	11	27	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43412582--43412854	145	1.9	145	87	4	408	38	11	26	23	1.89
43412785--43412955	59	2.9	58	80	8	186	39	15	24	20	1.91
43412785--43412956	29	5.9	29	82	5	161	39	15	25	20	1.91
43412778--43412956	88	2.0	87	80	5	200	39	15	24	20	1.91
43415351--43415523	46	3.7	46	76	15	185	23	20	26	29	1.99
43415348--43415517	93	1.8	93	92	0	286	23	20	27	28	1.99
43418414--43418534	48	2.7	46	76	13	135	25	15	29	28	1.96
43425411--43425597	40	4.7	39	83	7	137	24	27	21	26	1.99
43425455--43425608	40	3.8	41	89	4	199	25	26	22	25	2.00
43428154--43428178	10	2.5	10	100	0	50	8	0	16	76	1.02
43436790--43436830	20	2.0	21	85	4	57	29	0	24	46	1.53
43440473--43440533	31	2.0	31	90	0	95	22	26	16	34	1.95
43440727--43440893	24	7.0	24	88	3	214	26	20	23	29	1.99
43440942--43441008	20	3.3	20	91	0	107	31	20	13	34	1.92
43441045--43441092	25	1.9	25	91	0	78	25	14	25	35	1.94
43442697--43442886	39	4.8	38	81	6	193	26	28	18	25	1.98
43442711--43442886	78	2.2	79	83	9	218	25	29	19	25	1.98
43450728--43450965	39	6.1	40	81	10	264	26	27	21	24	1.99
43458839--43458893	19	2.7	21	76	18	62	7	16	0	76	1.00
43462447--43462479	16	1.9	18	88	11	52	48	12	15	24	1.78
43464256--43464437	40	4.5	40	87	7	219	26	28	22	23	1.99
43472332--43472505	40	4.4	40	91	2	264	25	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43481864--43481993	50	2.6	49	89	3	181	28	29	17	24	1.97
43484171--43484311	43	3.3	43	75	8	144	23	17	25	33	1.96
43489843--43489921	29	2.7	29	86	5	106	27	32	15	24	1.95
43490567--43490603	8	4.6	8	96	0	65	40	8	0	51	1.32
43490562--43490607	2	23.0	2	81	0	56	41	6	2	50	1.40
43490562--43490603	16	2.6	16	88	0	66	40	7	2	50	1.43
43496558--43496636	29	2.7	29	86	5	106	27	32	15	24	1.95
43500738--43500867	40	3.2	40	84	4	174	23	29	24	22	1.99
43505026--43505192	49	3.4	49	94	0	271	34	8	28	28	1.86
43505131--43505254	62	2.0	62	96	0	230	34	10	28	26	1.89
43505147--43505245	31	3.2	31	62	16	78	33	10	29	27	1.89
43505193--43505450	49	5.3	49	98	0	480	33	11	28	26	1.91
43509032--43509129	48	2.0	49	84	9	130	37	4	36	21	1.73
43509031--43509131	24	4.2	24	82	7	116	38	3	36	20	1.72
43510757--43510841	32	2.6	32	76	14	75	25	21	27	25	1.99
43516925--43517022	24	4.1	23	84	11	126	35	5	38	20	1.75
43525177--43525239	27	2.3	27	80	0	72	14	17	28	39	1.89
43530692--43530790	28	3.5	29	79	6	105	27	15	26	31	1.95
43538384--43538482	28	3.5	29	82	6	114	28	15	26	30	1.96
43542062--43542305	40	6.1	40	87	2	303	27	26	21	24	1.99
43542392--43542580	64	3.0	64	58	16	142	33	26	11	28	1.91
43542274--43542612	123	2.8	123	95	0	597	33	25	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43549471--43549712	40	6.1	39	86	3	288	27	26	21	24	1.99
43549471--43549712	79	3.1	78	85	6	301	27	26	21	24	1.99
43549799--43549987	64	3.0	64	58	16	142	33	26	11	28	1.91
43549681--43550019	123	2.8	123	95	0	597	33	25	10	30	1.90
43554766--43554973	40	5.2	40	90	2	314	24	23	27	25	2.00
43566623--43566697	37	2.0	37	100	0	150	44	16	10	29	1.81
43590963--43590992	14	2.1	14	93	0	51	16	50	6	26	1.70
43591096--43591277	85	2.1	85	100	0	364	27	26	20	25	1.99
43591816--43591854	21	1.9	20	84	5	51	20	30	33	15	1.94
43593058--43593229	46	3.7	45	78	6	182	22	27	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444