genome.fa.s10.2.7.7.80.10.50.1000.324.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  324  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93460703--93460754	24	2.2	24	100	0	104	15	21	15	48	1.81
93463845--93463869	13	1.9	13	100	0	50	16	32	0	52	1.44
93463782--93463958	77	2.3	78	87	6	256	18	37	3	40	1.67
93464609--93464639	13	2.4	13	94	0	53	45	0	12	41	1.42
93466393--93466438	24	2.0	22	83	8	56	34	4	4	56	1.39
93476362--93476570	21	9.6	21	72	11	102	55	12	10	21	1.66
93476438--93476494	24	2.4	24	87	0	87	45	12	12	29	1.78
93476468--93476571	42	2.4	43	85	8	138	57	13	7	21	1.61
93479122--93479157	11	3.3	11	88	0	54	63	2	5	27	1.30
93479164--93479210	22	2.1	22	84	0	58	74	8	6	10	1.22
93496382--93496752	48	7.8	47	74	14	216	28	17	29	24	1.97
93496385--93496702	48	6.6	49	76	10	239	27	17	30	24	1.97
93496524--93496751	98	2.3	99	81	7	263	27	18	29	24	1.98
93496575--93496749	49	3.6	49	81	6	171	26	18	29	25	1.98
93500388--93500473	43	2.0	43	95	0	154	22	22	19	36	1.96
93503314--93503679	27	13.6	27	74	12	128	34	21	10	33	1.87
93503325--93503497	54	3.2	54	89	0	256	27	24	8	39	1.84
93503325--93503497	81	2.1	81	92	0	292	27	24	8	39	1.84
93503529--93503679	54	2.8	54	82	1	169	39	21	9	29	1.84
93503554--93503735	54	3.4	53	80	4	168	41	19	8	30	1.82
93503554--93503741	27	6.9	27	76	10	107	39	18	9	31	1.83
93504670--93504739	25	2.8	24	84	4	86	25	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93504670--93504766	25	4.0	23	81	8	77	28	23	21	25	1.99
93504887--93504978	42	2.2	42	94	0	157	31	15	20	32	1.94
93505002--93505116	31	3.7	31	96	1	205	28	17	26	27	1.97
93506005--93506053	21	2.3	21	78	3	53	20	24	32	22	1.98
93513725--93513776	20	2.6	20	93	0	86	19	30	28	21	1.97
93516255--93516754	132	3.8	131	80	4	510	33	16	19	30	1.94
93517922--93517946	2	12.5	2	100	0	50	52	0	0	48	1.00
93518457--93518529	3	23.7	3	92	2	101	63	1	4	31	1.22
93527073--93527108	13	2.8	14	84	16	51	27	25	0	47	1.52
93527060--93527100	18	2.2	19	87	12	59	29	24	0	46	1.53
93527247--93527358	38	2.8	40	72	5	102	30	26	19	23	1.98
93527597--93527635	18	2.1	19	90	4	62	48	10	0	41	1.37
93528951--93528995	5	8.4	5	83	11	54	57	2	0	40	1.11
93528950--93529004	11	4.5	12	79	18	60	56	1	0	41	1.10
93528951--93529004	17	3.3	17	80	15	60	57	1	0	40	1.09
93528952--93529004	27	2.0	27	88	7	81	56	1	0	41	1.10
93537061--93537145	42	2.0	42	93	0	143	35	34	4	25	1.77
93540146--93540206	14	4.2	13	71	20	50	13	6	4	75	1.16
93540165--93540202	17	2.2	17	90	0	58	10	7	5	76	1.15
93544099--93544152	27	2.0	26	82	3	63	57	7	5	29	1.49
93545600--93545633	14	2.3	15	85	10	52	20	0	20	58	1.39
93545580--93545655	35	2.2	35	90	4	118	18	0	23	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93546207--93546365	44	3.6	44	80	4	167	28	25	19	25	1.99
93546634--93546739	44	2.4	44	93	1	185	30	23	15	31	1.95
93546821--93547217	44	9.1	43	74	8	320	25	24	19	29	1.99
93546773--93547020	130	1.9	131	89	2	392	25	26	19	29	1.99
93546807--93547230	218	1.9	218	93	0	722	26	25	19	28	1.99
93547003--93547236	130	1.8	130	94	0	414	24	26	20	28	1.99
93548578--93548612	3	11.7	3	93	0	61	0	28	0	71	0.86
93553919--93553972	27	2.0	26	85	3	72	59	5	3	31	1.38
93554053--93554104	13	4.3	11	77	18	50	65	0	3	30	1.10
93555624--93555935	157	2.0	155	88	4	468	42	3	9	43	1.55
93559213--93559244	17	1.9	17	93	6	57	59	18	0	21	1.38
93560063--93560096	16	2.1	16	94	0	59	26	29	2	41	1.70
93561685--93561758	16	4.7	16	75	11	64	55	0	0	44	0.99
93564753--93564807	22	2.5	22	85	5	67	41	1	0	56	1.10
93576060--93576106	24	1.9	25	82	4	60	42	17	14	25	1.87
93576070--93576110	18	2.2	19	86	4	57	41	17	14	26	1.88
93576070--93576119	19	2.7	19	87	3	66	40	16	14	30	1.87
93582798--93582829	16	2.0	16	93	0	55	34	0	12	53	1.39
93583791--93583856	23	3.2	22	64	28	54	39	13	3	43	1.60
93583788--93583866	39	2.0	39	97	0	149	37	13	2	45	1.58
93591519--93591614	49	2.0	49	100	0	192	37	8	13	40	1.75
93598660--93598709	3	16.7	3	100	0	100	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93606092--93606192	26	3.9	26	96	0	175	29	1	28	39	1.68
93606096--93606164	13	5.3	13	66	13	52	31	0	28	39	1.57
93607792--93607948	27	5.9	27	82	12	184	19	24	22	34	1.96
93607789--93607948	54	3.0	54	91	4	247	18	24	22	34	1.96
93613153--93613257	51	2.1	50	96	1	192	31	4	26	37	1.77
93613153--93613257	25	4.2	26	92	4	180	31	4	26	37	1.77
93614837--93614967	27	4.9	27	79	12	153	19	24	20	35	1.96
93614825--93614967	54	2.7	54	90	3	209	19	24	21	34	1.97
93614837--93614985	27	5.5	26	81	9	131	20	24	19	34	1.96
93616077--93616273	48	4.1	48	88	4	281	30	9	12	47	1.73
93617392--93617420	14	2.1	14	100	0	58	41	6	13	37	1.72
93618713--93618785	16	4.4	16	67	23	53	67	12	0	20	1.23
93619101--93619144	12	3.7	12	80	19	56	0	31	0	68	0.90
93619101--93619177	26	2.9	25	81	14	75	0	36	1	62	1.04
93620395--93620420	6	4.3	6	100	0	52	84	0	15	0	0.62
93623198--93623252	16	3.4	16	76	18	69	52	1	9	36	1.44
93623190--93623252	32	2.0	32	100	0	126	49	3	9	38	1.51
93630331--93630355	6	4.2	6	100	0	50	0	36	0	64	0.94
93633647--93633672	2	13.0	2	100	0	52	50	0	0	50	1.00
93644342--93644393	20	2.6	20	81	0	77	25	9	11	53	1.67
93647190--93647229	11	3.6	11	86	6	55	20	0	5	75	0.99
93657119--93657210	44	2.1	44	87	4	132	22	18	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93657368--93657467	18	5.6	18	72	11	53	35	12	17	36	1.86
93657390--93657479	36	2.5	36	76	3	101	34	11	16	37	1.84
93660088--93660165	33	2.4	33	84	0	93	30	11	37	20	1.88
93663231--93663397	43	3.9	43	76	6	178	31	25	14	28	1.95
93663930--93663976	18	2.6	18	80	10	51	42	21	4	31	1.72
93665831--93665879	17	2.8	17	87	3	62	2	32	0	65	1.04
93665851--93665913	23	2.7	23	83	13	69	4	30	0	65	1.13
93665944--93665970	9	3.0	9	100	0	54	0	44	0	55	0.99
93671106--93671171	31	2.1	31	97	0	123	25	19	16	37	1.93
93672645--93672719	28	2.7	28	85	0	96	33	9	25	32	1.88
93673259--93673286	13	2.2	13	100	0	56	14	0	32	53	1.41
93679039--93679116	28	2.8	28	88	0	111	33	11	25	29	1.91
93679330--93679403	37	2.0	37	97	0	139	43	9	10	36	1.72
93685078--93685158	35	2.3	35	85	4	110	24	18	28	28	1.98
93685641--93685717	28	2.8	28	82	9	95	29	24	18	27	1.98
93694158--93694487	164	2.0	165	98	0	635	24	18	21	36	1.95
93711332--93711362	2	15.5	2	100	0	62	51	0	0	48	1.00
93712518--93712593	41	1.9	38	86	7	107	43	1	0	55	1.08
93712520--93712607	41	2.2	38	82	6	95	48	1	0	50	1.08
93714694--93714759	29	2.3	29	77	10	75	45	0	0	54	0.99
93715186--93715230	24	2.0	24	86	8	67	48	0	6	44	1.29
93732174--93732213	21	2.0	20	85	14	55	37	12	12	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93733376--93733454	28	2.8	28	78	5	79	67	11	0	21	1.22
93733631--93733666	17	2.1	17	89	0	54	58	8	0	33	1.28
93735314--93735352	13	3.0	13	84	0	51	46	7	5	41	1.55
93737296--93737588	90	3.3	90	79	2	277	23	23	17	35	1.95
93738276--93738320	23	2.0	23	83	8	58	44	8	2	44	1.47
93738814--93738851	15	2.5	15	83	12	51	47	0	0	52	1.00
93739042--93739091	20	2.5	20	86	3	73	50	12	12	26	1.74
93741601--93741666	10	6.6	10	71	22	50	54	0	3	42	1.15
93741613--93741666	19	2.8	19	78	15	58	53	0	3	42	1.18
93744762--93744812	18	2.8	18	90	0	75	43	9	19	27	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444