genome.fa.s10.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  159  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43593055--43593228	94	1.9	92	85	4	242	22	28	20	28	1.99
43597304--43597397	29	3.2	29	92	0	152	25	27	15	30	1.96
43597266--43597397	58	2.3	58	82	2	158	25	32	15	26	1.96
43609836--43610006	40	4.3	39	77	10	159	28	21	26	23	1.99
43614950--43615020	34	2.1	34	100	0	142	23	11	29	35	1.90
43618571--43618668	30	3.2	30	62	18	74	32	17	29	20	1.95
43618551--43618706	63	2.3	65	91	8	244	34	18	28	18	1.95
43629476--43629629	38	3.9	39	81	8	125	32	26	20	20	1.97
43629476--43629611	38	3.5	36	87	7	164	33	26	21	19	1.97
43641018--43641087	27	2.6	27	97	2	131	31	27	12	28	1.93
43643553--43643582	14	2.1	15	93	6	53	23	26	30	20	1.98
43644826--43644891	28	2.4	28	87	5	98	36	28	7	27	1.84
43644997--43645086	28	3.2	27	81	7	101	18	23	23	34	1.96
43645540--43645580	18	2.3	18	86	0	55	24	2	4	68	1.22
43646171--43646204	10	3.3	10	84	8	50	29	8	8	52	1.62
43649334--43649564	40	5.8	39	90	4	313	22	28	24	23	1.99
43656041--43656105	28	2.3	28	92	5	105	33	29	7	29	1.85
43656221--43656297	27	2.7	27	80	9	84	23	25	16	33	1.96
43656211--43656300	28	3.2	27	80	10	94	21	24	21	33	1.97
43656249--43656311	29	2.2	28	80	5	65	23	26	17	31	1.97
43656752--43656792	18	2.3	18	86	0	55	24	2	4	68	1.22
43657384--43657417	10	3.3	10	84	8	50	29	8	8	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43662336--43662486	40	3.8	40	77	13	134	27	23	26	22	2.00
43670327--43670477	40	3.8	40	77	6	146	27	23	26	22	2.00
43676142--43676313	93	1.8	93	92	0	290	27	27	22	22	1.99
43676134--43676309	46	3.8	46	79	10	205	28	27	21	22	1.99
43678672--43678721	15	3.4	15	86	2	66	60	12	18	10	1.59
43678683--43678730	15	3.2	15	79	5	53	56	14	16	12	1.68
43681644--43681772	46	2.8	46	84	4	179	31	27	20	20	1.98
43681652--43681791	46	3.0	45	71	17	117	30	27	20	22	1.98
43685985--43686070	43	2.0	43	84	13	115	27	30	18	23	1.98
43692171--43692340	38	4.4	38	88	1	232	34	24	20	21	1.97
43692171--43692360	76	2.5	77	85	5	258	33	24	20	22	1.97
43712184--43712246	33	1.9	32	84	12	83	38	3	3	55	1.32
43712232--43712278	20	2.5	19	83	12	62	44	0	0	55	0.99
43715113--43715190	28	2.8	28	84	5	88	44	3	3	47	1.39
43716831--43717013	40	4.6	40	85	3	244	24	25	24	25	2.00
43724894--43725112	40	5.6	40	83	5	259	25	26	23	24	2.00
43724894--43725112	79	2.8	79	84	5	266	25	26	23	24	2.00
43724894--43725112	119	1.8	118	89	2	341	25	26	23	24	2.00
43729546--43729748	95	2.1	95	86	0	271	20	21	21	36	1.95
43729919--43729971	27	2.0	27	88	7	81	16	26	26	30	1.97
43732251--43732286	9	3.9	9	88	3	54	11	33	41	13	1.80
43732253--43732294	18	2.3	18	92	8	68	11	35	40	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732253--43732294	9	4.7	9	85	5	50	11	35	40	11	1.79
43739535--43739571	18	2.1	18	94	0	65	32	21	24	21	1.98
43741507--43741597	43	2.1	43	87	2	130	28	24	16	30	1.96
43742767--43743131	47	7.8	47	89	0	509	26	30	10	32	1.89
43745618--43745658	20	2.0	20	85	9	55	46	17	7	29	1.74
43747772--43747894	22	5.3	22	63	18	70	33	9	30	26	1.89
43747765--43748016	47	5.4	47	95	0	450	35	7	28	28	1.85
43750962--43751007	13	3.5	13	72	21	51	39	8	10	41	1.71
43750960--43751011	26	2.0	26	100	0	104	38	11	11	38	1.78
43757243--43757460	67	3.3	67	87	8	245	22	30	14	32	1.94
43757307--43757460	67	2.3	65	95	2	272	24	31	12	31	1.93
43765031--43765236	40	5.2	40	81	4	222	27	26	20	25	1.99
43765022--43765221	79	2.5	78	80	4	222	28	26	19	26	1.98
43767352--43767509	29	5.5	29	88	3	212	24	31	15	29	1.95
43767294--43767509	57	3.8	57	80	4	213	25	32	15	26	1.95
43775229--43775389	29	5.6	29	89	1	216	24	30	14	29	1.95
43775201--43775389	86	2.2	84	79	5	207	24	32	15	27	1.95
43775229--43775389	57	2.8	58	86	1	216	24	30	14	29	1.95
43782327--43782511	40	4.7	40	84	9	227	25	27	21	25	1.99
43782304--43782511	79	2.6	79	83	11	255	25	26	20	26	1.99
43784359--43784461	29	3.6	29	97	0	197	27	14	31	27	1.95
43784359--43784481	58	2.1	58	89	0	183	26	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43790531--43790716	40	4.7	40	84	7	218	26	27	20	24	1.99
43796473--43796533	31	2.0	31	100	0	122	18	19	36	26	1.94
43806751--43806847	26	3.8	26	90	1	135	26	22	21	28	1.99
43812012--43812060	17	2.8	18	74	22	50	24	18	22	34	1.96
43812883--43813033	40	3.8	40	79	6	155	26	23	27	23	2.00
43812919--43813049	40	3.3	40	79	4	149	24	22	26	25	2.00
43820028--43820076	17	2.8	18	74	22	50	24	18	22	34	1.96
43820892--43821041	40	3.8	40	78	6	146	26	22	27	23	2.00
43820927--43821057	40	3.3	40	79	4	149	24	22	26	25	2.00
43822221--43822321	28	3.5	28	86	6	114	29	26	13	29	1.94
43830059--43830159	28	3.5	28	86	6	114	29	26	13	29	1.94
43847874--43847905	2	16.0	2	100	0	64	50	0	0	50	1.00
43848338--43848408	29	2.4	29	88	4	99	26	15	30	26	1.96
43850210--43850281	31	2.3	31	92	0	117	18	25	33	23	1.97
43853489--43853546	29	2.0	28	81	15	66	39	5	24	31	1.77
43854008--43854093	43	2.0	44	81	2	102	25	15	24	34	1.94
43859419--43859448	9	3.3	9	95	0	51	0	13	0	86	0.57
43860313--43860352	21	2.0	21	90	5	64	17	20	40	22	1.92
43860716--43860772	20	2.8	20	91	0	96	31	10	21	36	1.87
43860822--43860918	26	3.8	25	86	6	133	24	21	23	29	1.99
43860823--43860930	51	2.2	49	83	8	139	25	20	24	29	1.99
43868806--43868872	20	3.3	20	89	4	100	32	10	20	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43868922--43869042	27	4.7	27	94	3	189	28	21	23	27	1.99
43875308--43875806	49	10.3	49	94	1	862	32	8	28	30	1.87
43880659--43880705	20	2.3	20	85	7	60	34	12	19	34	1.89
43880757--43880900	51	2.8	52	86	7	206	27	19	22	29	1.98
43880757--43880903	26	5.7	26	90	4	212	27	19	23	30	1.98
43886749--43886920	93	1.8	93	87	0	254	30	29	19	20	1.97
43888456--43888638	27	6.9	26	82	7	181	40	20	10	28	1.85
43888454--43888638	53	3.5	52	78	9	178	40	20	10	29	1.86
43892798--43892924	27	4.7	27	88	7	188	44	21	4	29	1.72
43892798--43892924	53	2.4	54	91	2	211	44	21	4	29	1.72
43892798--43892977	27	6.7	26	84	6	182	42	19	8	30	1.80
43892798--43892977	80	2.2	81	82	4	204	42	19	8	30	1.80
43892787--43892991	27	7.7	26	79	10	146	40	19	9	30	1.83
43898013--43898164	42	3.6	42	76	8	157	29	17	25	27	1.98
43901820--43901970	40	3.8	39	80	6	153	27	23	27	22	1.99
43901857--43901986	40	3.3	39	80	4	161	24	23	27	24	2.00
43910279--43910493	49	4.4	49	96	0	367	28	9	32	29	1.88
43910595--43910715	37	3.3	37	96	1	217	25	19	33	21	1.96
43912768--43912931	29	5.7	29	98	0	310	26	16	32	24	1.96
43913413--43913511	41	2.4	41	80	11	114	26	24	24	25	2.00
43916231--43916445	49	4.4	49	96	0	376	29	9	32	29	1.88
43916547--43916668	37	3.3	37	97	0	226	25	19	33	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43917933--43918062	40	3.2	40	84	4	174	22	24	29	23	1.99
43925144--43925273	40	3.2	40	81	8	167	22	23	29	24	1.99
43928032--43928085	27	2.0	27	82	7	65	37	20	22	20	1.95
43928226--43928278	27	2.0	27	88	0	79	26	24	18	30	1.98
43928323--43928617	54	5.4	54	76	5	245	32	9	18	39	1.83
43928351--43928617	27	9.8	27	76	5	180	31	8	18	40	1.81
43928578--43928639	27	2.3	27	94	0	70	30	9	20	38	1.85
43928653--43928728	27	2.8	26	84	7	98	32	22	17	27	1.96
43930742--43930851	33	3.3	33	88	0	166	30	26	19	23	1.98
43931246--43931307	27	2.3	26	75	2	61	29	17	20	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444