genome.fa.s10.2.7.7.80.10.50.1000.381.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  381  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110587879--110587917	17	2.3	17	90	0	60	66	0	7	25	1.18
110588015--110588088	33	2.2	33	81	13	82	67	2	8	21	1.29
110588081--110588132	14	3.6	14	82	5	59	57	1	3	36	1.28
110587941--110588058	3	40.3	3	70	8	55	59	1	10	28	1.40
110590318--110590358	17	2.3	18	84	16	50	53	4	7	34	1.50
110591118--110591155	19	2.0	20	89	5	60	18	0	10	71	1.14
110593454--110593496	22	2.0	22	90	4	70	20	13	11	53	1.71
110595564--110595616	25	2.1	26	86	10	74	49	0	0	50	1.00
110597041--110597100	15	4.2	15	71	28	51	28	8	0	63	1.23
110597041--110597100	21	2.9	21	80	5	68	28	8	0	63	1.23
110597142--110597445	3	99.0	3	65	21	55	27	8	2	61	1.39
110597302--110597373	24	3.1	23	75	15	76	27	12	0	59	1.33
110598515--110598569	24	2.3	24	87	0	74	38	0	1	60	1.08
110598816--110598868	22	2.3	24	81	12	67	45	0	1	52	1.11
110600638--110601065	143	3.1	135	90	8	698	31	24	18	25	1.97
110601313--110601364	25	2.0	26	85	3	70	25	13	23	38	1.91
110602843--110602947	26	4.2	25	85	9	144	36	22	5	35	1.78
110602855--110602947	25	3.9	22	84	11	96	35	23	5	35	1.78
110602855--110602947	47	1.9	49	91	4	154	35	23	5	35	1.78
110604700--110604737	20	2.1	19	85	14	53	47	5	0	47	1.24
110608131--110608158	1	28.0	1	100	0	56	0	0	0	100	0.00
110611349--110611515	68	2.5	64	78	10	160	29	16	27	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110611491--110611636	49	2.9	50	82	2	186	26	20	25	27	1.99
110614689--110614862	46	3.8	46	79	13	214	28	29	21	20	1.98
110614697--110614866	92	1.8	93	94	1	306	28	29	21	20	1.98
110617238--110617326	30	3.0	30	80	8	101	57	15	16	10	1.65
110617238--110617317	15	5.4	15	80	7	92	58	13	17	10	1.62
110617249--110617326	15	5.2	15	78	9	79	56	15	16	11	1.67
110620264--110620436	46	3.8	46	79	14	214	28	29	21	20	1.98
110620272--110620441	91	1.8	92	94	2	306	27	30	21	20	1.98
110624035--110624095	16	3.7	16	71	16	52	47	1	22	27	1.61
110624030--110624095	34	1.9	34	96	0	123	48	3	21	27	1.64
110624027--110624080	18	3.2	17	72	17	58	55	3	16	24	1.57
110627416--110627485	36	2.0	34	81	10	79	30	15	4	50	1.64
110627870--110627908	20	2.0	20	85	5	53	46	2	0	51	1.14
110627885--110627928	22	2.0	23	81	4	54	56	2	0	40	1.11
110628757--110628784	8	3.5	8	100	0	56	0	14	0	85	0.59
110630530--110630570	2	21.5	2	87	9	59	46	0	0	53	1.00
110630546--110630625	40	2.0	40	85	4	108	38	6	2	52	1.40
110631240--110631422	92	2.0	92	98	0	357	33	10	16	39	1.83
110631972--110632007	11	3.3	11	92	0	54	61	36	2	0	1.11
110631972--110632013	22	1.9	22	90	0	66	57	35	7	0	1.26
110632786--110632893	11	9.9	11	83	1	119	61	34	3	0	1.20
110632784--110632893	22	5.0	22	83	5	134	61	33	3	0	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110632786--110632893	33	3.3	33	90	1	164	61	34	3	0	1.20
110632886--110632927	22	1.9	22	85	0	57	61	21	7	9	1.50
110648730--110648786	30	1.9	30	85	0	78	35	7	26	31	1.83
110651943--110652016	15	4.7	15	78	6	76	71	2	1	24	1.07
110657707--110657742	18	1.9	18	88	5	54	72	8	2	16	1.21
110658816--110658873	30	1.9	30	89	0	89	18	25	29	25	1.98
110662107--110662165	9	6.6	9	78	7	57	45	18	6	28	1.75
110662107--110662165	18	3.3	18	73	7	66	45	18	6	28	1.75
110662183--110662229	6	7.5	6	90	9	76	17	0	2	80	0.80
110662180--110662229	26	2.0	25	92	4	82	18	0	2	80	0.82
110662183--110662252	32	2.2	31	85	7	88	22	0	2	74	0.95
110662254--110662278	13	1.9	13	100	0	50	12	0	48	40	1.40
110662255--110662292	18	2.1	18	95	0	67	7	0	47	44	1.32
110665935--110665959	12	2.1	12	100	0	50	84	0	0	16	0.63
110678347--110678392	24	1.9	24	95	0	83	32	15	10	41	1.82
110680727--110680779	26	2.0	27	85	7	74	24	15	22	37	1.92
110682256--110682363	26	4.2	26	91	2	182	36	24	6	33	1.81
110682256--110682363	51	2.1	52	94	1	191	36	24	6	33	1.81
110687660--110687710	24	2.0	26	85	7	70	25	11	23	39	1.89
110689193--110689300	26	4.2	26	91	0	180	37	24	6	32	1.81
110690571--110690678	26	4.2	26	97	0	207	30	6	26	36	1.82
110696433--110696490	31	1.9	30	86	10	82	48	3	1	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110713457--110713660	80	2.7	73	80	7	210	54	4	10	30	1.55
110718967--110719064	35	2.7	37	87	12	150	37	10	16	35	1.82
110718967--110719057	19	4.9	19	92	8	161	37	10	15	36	1.83
110718967--110719080	19	5.8	22	87	10	96	36	9	15	37	1.81
110720127--110720156	13	2.3	13	94	0	51	20	10	16	53	1.71
110728628--110728839	46	4.9	39	81	14	183	36	16	24	22	1.94
110728667--110728883	46	4.7	46	90	1	301	38	15	24	21	1.92
110729144--110729190	25	2.0	25	83	8	62	53	4	14	27	1.60
110731313--110731492	78	2.3	78	92	3	317	32	19	23	23	1.97
110731418--110731627	89	2.4	90	80	7	241	30	16	25	28	1.97
110731549--110731834	131	2.2	131	94	0	500	34	17	23	24	1.96
110731811--110732312	78	6.3	78	88	5	720	32	18	24	24	1.97
110731843--110732403	244	2.3	244	91	1	910	32	18	24	25	1.97
110732090--110732403	78	3.8	80	87	8	381	32	17	24	24	1.97
110732266--110732475	45	4.6	45	73	8	183	30	16	26	26	1.97
110732337--110732492	45	3.5	45	86	0	213	32	14	27	25	1.95
110732683--110732722	21	2.0	20	90	5	62	75	15	0	10	1.05
110732841--110732932	19	4.9	19	89	5	143	39	9	13	38	1.77
110732833--110732939	36	3.0	38	82	10	136	39	10	13	37	1.78
110735781--110735850	34	2.1	34	100	0	140	50	2	14	32	1.58
110736297--110736360	25	2.6	25	76	11	69	62	1	1	34	1.14
110746519--110746567	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110746856--110746888	2	16.5	2	100	0	66	48	0	0	51	1.00
110759610--110759652	5	7.8	5	85	14	50	76	2	2	18	1.00
110759610--110759654	18	2.6	17	89	6	65	75	2	4	17	1.07
110760402--110760438	17	2.2	17	90	0	56	21	2	2	72	1.09
110760433--110760475	19	2.3	19	96	4	79	39	9	9	41	1.69
110778674--110778716	17	2.5	17	100	0	86	30	30	30	9	1.88
110782537--110782570	17	2.0	17	88	0	50	23	29	14	32	1.94
110795266--110795295	6	5.0	6	95	0	51	30	0	0	70	0.88
110799725--110799760	12	2.9	12	91	4	54	16	27	0	55	1.42
110799725--110799760	18	1.9	19	88	5	56	16	27	0	55	1.42
110805776--110805875	17	5.9	17	69	6	60	41	17	8	34	1.78
110810289--110810484	97	2.0	97	100	0	392	35	23	8	33	1.84
110812179--110812397	48	4.5	48	83	0	222	27	29	16	25	1.97
110814246--110814436	96	2.0	96	90	0	301	33	13	18	34	1.90
110817826--110817870	23	2.0	23	86	0	63	28	0	4	66	1.11
110819212--110819317	52	2.0	52	85	1	133	35	7	16	40	1.76
110822746--110822874	67	1.9	70	85	6	183	59	4	6	28	1.44
110822746--110822878	68	1.9	70	81	9	162	60	4	6	27	1.41
110834570--110834601	17	2.0	17	88	11	50	59	6	3	31	1.38
110837701--110837739	19	2.1	19	90	0	60	23	5	10	61	1.48
110840620--110840644	9	2.8	9	100	0	50	24	8	20	48	1.76
110842185--110842223	19	2.1	18	85	4	51	61	15	0	23	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110843125--110843150	13	2.0	13	100	0	52	38	23	23	15	1.92
110843544--110843616	38	1.9	38	82	0	92	36	17	10	34	1.85
110852134--110852185	26	2.0	27	84	3	70	23	25	17	34	1.96
110855478--110855562	10	8.7	10	67	8	50	61	2	5	30	1.32
110855813--110855846	16	2.1	17	88	5	52	32	2	0	64	1.08
110855826--110855905	30	2.8	28	79	9	88	40	2	0	57	1.12
110859485--110859610	57	2.2	57	92	0	207	37	13	9	39	1.77
110861579--110861626	24	2.0	24	84	8	62	52	27	4	16	1.62
110863824--110863865	20	2.1	20	90	0	66	42	2	9	45	1.49
110871255--110871527	137	2.0	137	81	2	316	20	23	26	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444