genome.fa.s10.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  16  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4666202--4666234	14	2.3	15	94	5	59	18	0	0	81	0.68
4667176--4667207	13	2.5	13	94	0	55	53	21	15	9	1.70
4667308--4667353	18	2.6	18	86	6	58	28	13	21	36	1.91
4667265--4667349	41	2.0	42	86	2	118	29	15	21	34	1.94
4668358--4668392	14	2.4	14	90	4	52	31	0	0	68	0.90
4675707--4675772	19	3.5	19	78	19	59	33	6	3	57	1.38
4676074--4676127	28	1.9	28	81	7	65	38	12	0	48	1.42
4676685--4676820	26	5.2	26	95	0	227	34	5	23	36	1.77
4683168--4683212	15	3.1	15	79	17	51	22	24	13	40	1.90
4691182--4691779	119	5.0	118	91	2	910	33	16	18	31	1.93
4691709--4691846	46	3.2	46	63	29	120	35	15	18	30	1.92
4691697--4691927	84	2.8	84	90	2	351	34	17	18	29	1.94
4693065--4693089	8	3.1	8	100	0	50	0	24	64	12	1.27
4693995--4694048	28	1.9	28	81	7	65	38	12	0	48	1.42
4700934--4700997	31	2.1	31	81	16	73	62	0	1	35	1.05
4700943--4700999	17	3.5	17	76	11	57	63	0	1	35	1.05
4701484--4701574	19	4.9	19	85	8	134	36	16	9	37	1.82
4701484--4701574	35	2.5	37	87	8	132	36	16	9	37	1.82
4705413--4705496	26	3.2	26	96	0	150	36	25	4	33	1.77
4711930--4711960	14	2.2	14	94	0	53	70	0	0	29	0.87
4712519--4712569	19	2.7	19	74	14	52	66	1	5	25	1.24
4712956--4713020	20	3.2	21	81	12	75	66	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4712962--4713021	21	2.9	21	83	14	72	63	0	3	33	1.11
4730499--4730560	31	2.0	31	93	0	106	38	22	8	30	1.83
4731750--4731828	22	3.6	21	74	15	70	40	0	5	54	1.22
4731803--4731828	2	13.0	2	100	0	52	50	0	0	50	1.00
4741928--4741986	20	2.9	21	80	12	70	64	0	3	32	1.10
4741923--4741987	21	3.2	21	81	16	75	63	0	4	32	1.15
4748948--4749293	132	2.6	131	79	3	338	27	19	19	32	1.96
4749122--4749428	134	2.3	133	81	1	330	27	19	17	34	1.95
4756947--4757121	30	5.8	29	86	4	215	26	47	4	21	1.68
4757623--4757741	25	4.7	25	71	14	82	36	4	1	57	1.28
4757685--4757749	16	4.1	17	75	18	68	35	3	0	61	1.12
4757767--4757831	25	2.8	24	88	6	89	35	7	4	52	1.51
4757984--4758031	16	3.1	15	90	6	69	31	2	2	64	1.16
4757984--4758035	8	6.5	8	82	8	61	30	1	1	65	1.14
4763037--4763123	44	2.0	44	95	0	156	32	13	25	28	1.94
4763106--4763140	14	2.5	14	95	0	61	51	14	20	14	1.76
4763062--4763184	58	2.1	58	89	0	183	34	13	26	24	1.93
4763120--4763526	44	9.2	44	92	0	661	28	14	30	25	1.95
4765454--4765493	2	20.0	2	89	0	62	50	0	0	50	1.00
4765765--4765797	2	16.5	2	93	0	57	48	3	0	48	1.17
4766536--4766897	132	2.7	130	79	2	359	27	20	19	32	1.96
4766690--4767017	135	2.5	134	80	2	329	26	19	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4766806--4767051	135	1.8	135	87	0	366	25	17	19	37	1.93
4771115--4771158	19	2.2	19	88	8	61	68	0	9	22	1.18
4772003--4772046	22	2.0	23	82	13	56	34	4	22	38	1.75
4782002--4782041	21	1.9	21	100	0	80	67	0	5	27	1.11
4783929--4783980	26	2.0	26	100	0	104	53	7	0	38	1.30
4786638--4786890	84	3.0	84	81	3	267	34	11	11	42	1.77
4786724--4786950	84	2.7	84	82	4	255	29	10	12	47	1.75
4787511--4787941	140	3.0	141	92	3	704	24	19	16	39	1.91
4788611--4788689	40	2.0	40	100	0	158	27	12	15	44	1.82
4789171--4789305	26	5.2	26	93	1	227	33	5	24	37	1.78
4789171--4789305	51	2.6	52	96	1	245	33	5	24	37	1.78
4792739--4792780	22	2.0	21	90	4	66	40	19	9	30	1.83
4792734--4792789	19	2.8	20	82	12	69	41	17	10	30	1.84
4795526--4795637	3	37.3	3	70	13	70	58	1	8	31	1.39
4796893--4796929	12	3.2	12	88	7	58	81	0	16	2	0.81
4796883--4796930	18	2.6	19	83	9	55	77	2	16	4	1.03
4797891--4798053	43	3.8	43	79	4	184	22	20	21	35	1.96
4797858--4798097	43	5.5	43	78	8	166	22	21	22	34	1.97
4798164--4798316	44	3.5	44	73	8	150	18	22	22	35	1.95
4797805--4798325	87	6.0	85	73	11	335	20	22	21	35	1.96
4805278--4805696	137	3.1	137	97	0	786	32	25	17	24	1.97
4807484--4807614	24	5.2	25	86	9	178	36	23	6	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4807484--4807614	26	5.2	26	87	5	173	36	23	6	33	1.80
4811307--4811729	137	3.1	137	97	0	785	32	24	17	24	1.97
4813513--4813648	26	5.2	26	90	0	209	36	23	6	33	1.81
4819706--4819817	3	37.3	3	70	13	70	58	1	8	31	1.39
4820193--4820236	3	14.0	3	81	9	52	63	0	6	29	1.20
4821095--4821126	11	2.9	11	95	0	55	81	0	15	3	0.82
4823468--4823578	20	5.2	20	75	17	73	54	0	0	45	0.99
4823546--4823601	12	4.6	13	74	19	50	58	1	0	39	1.08
4823501--4823587	20	4.4	19	77	16	72	56	1	0	42	1.07
4823545--4823611	35	2.0	33	94	5	116	59	1	0	38	1.06
4823578--4823633	22	2.4	24	82	8	71	55	5	1	37	1.33
4823732--4823798	19	3.2	19	66	22	53	65	1	7	25	1.27
4841600--4841635	17	2.1	18	89	5	56	27	33	2	36	1.72
4843318--4843380	27	2.5	24	76	19	65	53	0	3	42	1.16
4844900--4844967	28	2.3	30	75	14	70	27	17	10	44	1.81
4845326--4845363	20	1.9	20	100	0	76	31	7	15	44	1.75
4846689--4846843	25	6.1	25	74	14	122	56	4	7	32	1.47
4846913--4846937	2	12.5	2	100	0	50	52	0	0	48	1.00
4846925--4847053	23	5.5	24	69	21	78	54	3	6	35	1.44
4846990--4847050	22	2.7	23	77	12	63	60	4	1	32	1.28
4847031--4847064	16	2.1	16	94	0	59	64	0	0	35	0.94
4847047--4847131	24	3.5	24	75	17	77	54	4	2	38	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4847020--4847135	14	8.8	13	71	15	69	55	6	1	37	1.35
4847169--4847231	23	2.8	23	83	7	67	58	4	3	33	1.35
4847289--4847318	14	2.1	14	93	0	51	56	0	10	33	1.32
4847381--4847441	22	2.8	20	75	20	61	59	3	1	36	1.24
4847338--4847440	23	4.4	23	72	22	81	58	3	2	34	1.31
4847486--4847542	3	19.0	3	78	7	53	57	0	5	36	1.21
4850493--4850546	26	2.1	27	82	6	67	24	14	24	37	1.93
4852032--4852089	26	2.2	26	93	0	98	36	24	5	34	1.78
4853042--4853363	156	2.1	155	82	9	390	28	19	26	25	1.99
4854731--4854755	10	2.5	10	100	0	50	12	44	0	44	1.41
4857989--4858018	14	2.2	13	94	5	51	50	0	13	36	1.42
4858088--4858639	183	3.0	183	98	0	1041	26	15	15	42	1.86
4859130--4860085	276	3.5	276	99	0	1867	35	13	13	37	1.84
4860177--4860244	24	2.8	24	86	8	95	30	20	5	42	1.76
4860566--4860668	9	11.6	9	82	2	100	49	14	0	34	1.50
4860566--4860668	18	5.8	18	82	2	118	49	14	0	34	1.50
4860562--4860668	27	4.0	27	86	2	144	49	14	0	35	1.49
4866311--4866361	21	2.4	21	80	0	66	29	19	49	1	1.60
4866616--4866682	31	2.2	31	83	0	80	17	4	17	59	1.53
4866756--4867124	43	8.7	43	91	3	568	24	33	19	23	1.97
4868349--4868559	64	3.2	64	62	22	144	30	26	17	26	1.97
4868315--4868601	137	2.1	137	96	1	522	32	25	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4868849--4868901	26	2.0	27	85	7	74	24	15	22	37	1.92
4870380--4870489	26	4.2	26	96	0	193	37	24	4	33	1.76
4871261--4871291	11	2.9	11	95	4	55	35	0	0	64	0.94
4871415--4871477	30	2.1	30	87	0	90	58	15	1	23	1.46
4879948--4880031	40	2.1	40	86	4	116	40	23	20	15	1.90
4880221--4880307	41	2.2	40	85	2	111	22	3	6	66	1.31
4880517--4880541	7	3.6	7	100	0	50	16	0	52	32	1.44
4880712--4880737	7	3.7	7	100	0	52	15	0	38	46	1.46
4880756--4880798	22	2.0	22	81	9	52	25	0	27	46	1.53
4881387--4881434	7	6.9	7	100	0	96	87	0	0	12	0.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444