Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  402  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116931331--116931357
14
1.9
14
100
0
54
74
7
3
14
1.18
116936046--116936089
13
3.4
13
87
6
54
54
6
0
38
1.27
116939296--116939327
2
16.0
2
100
0
64
50
0
0
50
1.00
116940237--116940302
33
2.0
33
96
0
123
25
18
13
42
1.87
116940841--116940891
23
2.2
23
82
6
59
39
11
17
31
1.86
116940901--116941038
21
6.3
21
76
6
123
32
18
21
26
1.97
116940874--116941038
44
3.7
43
81
5
188
30
17
23
27
1.97
116941020--116941083
23
2.9
23
75
13
62
45
14
15
25
1.83
116946680--116946712
1
33.0
1
93
0
57
0
0
3
96
0.20
116952797--116953012
47
4.6
46
76
7
177
29
17
28
24
1.97
116954154--116954216
22
2.9
22
88
2
92
12
39
25
22
1.89
116957182--116957345
40
4.1
40
81
3
195
24
21
28
25
1.99
116961343--116961502
27
6.0
25
80
10
133
20
25
20
33
1.97
116961340--116961487
54
2.7
54
89
3
217
19
25
21
33
1.97
116961363--116961487
27
4.6
27
80
9
139
19
25
20
34
1.96
116969448--116969595
54
2.7
54
89
3
208
19
25
20
34
1.96
116969477--116969610
27
5.0
27
76
11
123
20
26
19
34
1.96
116974357--116974408
16
3.1
16
69
15
50
46
23
5
25
1.74
116974349--116974415
35
1.9
35
90
0
107
44
20
5
28
1.75
116979244--116979377
38
3.5
38
86
0
187
35
14
19
30
1.92
116979909--116979955
2
23.5
2
100
0
94
48
0
0
51
1.00
116980564--116980626
32
2.0
32
90
0
99
36
15
12
34
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116981373--116981445
32
2.5
30
80
12
80
26
10
9
53
1.66
116981541--116981583
23
1.9
22
85
4
59
30
6
2
60
1.35
116985636--116985679
19
2.3
19
100
0
88
36
9
18
36
1.82
116985650--116985707
29
1.9
30
89
6
91
37
8
17
36
1.80
116985984--116986040
28
2.0
28
100
0
114
29
10
3
56
1.50
116990794--116990854
29
2.0
31
87
12
92
19
16
31
32
1.94
116991373--116991431
5
10.8
6
76
18
58
86
0
10
3
0.68
116991374--116991431
11
5.5
10
84
15
73
86
0
10
3
0.69
116991374--116991431
27
2.2
26
90
3
89
86
0
10
3
0.69
116992372--116993532
205
5.7
205
92
1
1854
31
18
21
29
1.97
116993364--116993853
260
1.9
256
85
3
678
33
18
22
26
1.97
116994167--116994200
17
2.0
17
100
0
68
41
5
11
41
1.66
116995597--116995638
22
1.9
22
85
0
57
26
23
7
42
1.80
117002776--117002854
10
8.0
10
73
17
51
62
1
5
31
1.25
117002811--117002864
20
2.7
19
85
8
63
64
3
1
29
1.21
117002928--117002981
22
2.4
23
78
3
65
62
3
5
27
1.34
117003016--117003077
12
5.2
12
75
12
58
59
0
4
35
1.19
117002983--117003115
7
20.0
7
64
20
54
57
1
3
37
1.23
117003081--117003152
27
2.7
26
75
14
74
58
1
4
36
1.26
117004665--117004781
44
2.7
44
90
0
189
27
26
13
32
1.94
117004668--117005186
221
2.3
218
86
5
695
27
23
17
31
1.97
117010860--117010928
34
2.0
34
97
0
129
8
27
7
56
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117014919--117014997
10
8.0
10
78
17
69
63
0
3
32
1.12
117014927--117015008
15
5.2
16
70
20
59
63
1
3
31
1.19
117014945--117015008
24
2.9
22
79
15
78
65
1
1
31
1.11
117014919--117015007
20
4.4
19
75
18
74
62
1
3
32
1.19
117014946--117015018
15
5.0
15
72
21
57
64
1
4
30
1.20
117014945--117015024
24
3.6
23
76
15
69
62
2
3
31
1.26
117015071--117015124
22
2.4
23
78
3
65
62
3
5
27
1.34
117015126--117015219
7
14.3
7
68
18
51
60
1
3
35
1.20
117015141--117015219
12
6.5
12
73
17
58
62
0
3
34
1.14
117019307--117019506
100
2.0
100
95
0
355
32
19
13
35
1.90
117020306--117020362
21
2.8
20
82
15
64
24
1
3
70
1.13
117020317--117020362
20
2.4
19
82
13
58
23
0
2
73
0.94
117023320--117023602
18
15.3
18
73
10
176
36
15
12
35
1.85
117023320--117023602
36
7.6
36
71
12
205
36
15
12
35
1.85
117023307--117023602
54
5.4
54
72
10
222
37
15
11
35
1.84
117023401--117023602
72
2.8
71
81
5
228
37
15
11
35
1.84
117023772--117023796
12
2.1
12
100
0
50
52
8
16
24
1.70
117023776--117023970
45
4.3
45
88
0
264
41
19
20
19
1.91
117024379--117024413
10
3.5
10
88
0
52
31
28
0
40
1.57
117025313--117025437
40
3.2
40
66
11
121
36
20
4
40
1.71
117025299--117025469
79
2.2
79
95
0
315
33
18
4
43
1.69
117025333--117025456
40
3.1
40
66
11
119
33
19
4
43
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117025716--117025772
9
6.2
9
81
8
62
12
12
0
75
1.05
117025726--117025772
17
2.7
18
90
3
69
14
10
0
74
1.07
117028853--117028909
5
11.4
5
80
12
55
17
3
0
78
0.88
117028876--117028915
8
5.0
8
90
0
62
20
0
0
80
0.72
117028884--117028945
24
2.5
24
80
10
63
22
3
1
72
1.08
117028853--117028950
29
3.3
27
77
13
88
20
4
1
74
1.04
117029510--117029559
25
2.0
25
100
0
100
20
24
8
48
1.76
117035734--117035770
18
1.9
19
89
10
58
13
5
16
64
1.45
117044510--117044662
43
3.6
43
72
11
136
27
17
26
28
1.98
117051163--117051263
42
2.4
42
80
12
109
26
17
22
32
1.97
117055126--117055160
18
1.9
18
88
0
52
34
25
8
31
1.86
117055695--117055722
5
5.6
5
100
0
56
21
0
0
78
0.75
117062445--117062527
24
3.4
24
90
6
123
28
20
22
27
1.99
117062444--117062539
49
1.9
50
85
10
135
27
22
22
27
1.99
117063126--117063160
18
1.9
18
88
0
52
34
25
8
31
1.86
117068300--117068329
15
2.0
15
100
0
60
40
6
26
26
1.81
117071537--117071578
20
2.0
21
86
13
61
14
9
42
33
1.78
117072711--117072818
26
4.2
26
89
0
171
33
7
22
37
1.82
117076563--117076646
34
2.5
32
75
11
87
30
23
21
23
1.99
117076668--117076710
22
1.9
23
90
4
70
25
53
0
20
1.46
117080085--117080340
40
6.4
40
87
2
313
25
28
23
23
1.99
117082888--117082935
18
2.9
16
82
14
62
47
22
0
29
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117082891--117082929
18
2.2
18
95
0
69
48
25
0
25
1.51
117084898--117084941
22
2.0
22
83
12
56
56
6
6
29
1.51
117085056--117085130
14
4.9
15
70
23
59
57
2
8
32
1.42
117085147--117085348
8
26.1
8
66
22
78
59
0
4
35
1.24
117085227--117085316
25
3.7
24
78
16
87
61
1
4
33
1.23
117086931--117087013
43
1.9
43
82
2
103
26
28
15
28
1.96
117086976--117087531
206
2.7
206
89
1
846
28
22
17
30
1.97
117088398--117088440
15
2.8
16
86
6
54
0
20
0
79
0.74
117088418--117088448
15
2.1
15
93
0
53
3
9
0
87
0.66
117088430--117088470
22
1.9
22
85
14
59
4
4
7
82
0.93
117088422--117088485
31
2.1
29
82
5
74
6
7
6
79
1.05
117099415--117099458
22
2.0
22
83
12
56
56
6
6
29
1.51
117099573--117099650
31
2.6
31
74
21
78
57
2
6
33
1.38
117099664--117099830
8
20.9
8
66
20
66
59
0
5
34
1.22
117099781--117099844
10
6.2
10
74
17
51
60
1
1
35
1.15
117099781--117099842
15
3.8
16
77
18
65
61
1
1
35
1.16
117099628--117099816
89
2.1
89
79
7
204
58
0
6
34
1.25
117099720--117099866
26
5.8
25
72
22
89
58
1
5
34
1.30
117099838--117099879
20
2.0
21
86
4
59
59
4
0
35
1.19
117103052--117103100
24
2.0
24
100
0
98
28
16
20
34
1.94
117103693--117103729
18
2.1
18
100
0
74
35
16
27
21
1.94
117107403--117107571
43
3.9
43
73
11
132
25
17
26
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117117231--117117281
16
3.2
16
72
5
50
54
11
0
33
1.37
117118538--117118572
18
1.9
18
88
0
52
80
2
8
8
1.01
117119773--117119819
19
2.6
19
86
6
62
51
4
0
44
1.21
117124445--117124478
15
2.3
15
100
0
68
44
11
5
38
1.65
117129583--117129651
26
2.7
26
79
2
68
34
20
8
36
1.83
117131523--117131746
40
5.6
40
83
5
274
22
27
24
25
2.00
117131487--117131746
80
3.3
79
81
5
292
23
26
24
25
2.00
117131487--117131746
120
2.2
120
83
6
325
23
26
24
25
2.00
117139619--117139839
40
5.6
40
80
6
245
23
27
24
24
2.00
117144812--117145145
49
7.0
47
94
2
560
33
9
27
28
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444