genome.fa.s10.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  170  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46857713--46858381	98	6.8	97	91	3	1029	30	26	7	35	1.84
46857713--46858381	146	4.6	147	91	2	1012	30	26	7	35	1.84
46861111--46861340	39	5.9	39	95	0	406	22	29	26	22	1.99
46864169--46864375	53	3.8	53	78	3	216	37	17	24	20	1.94
46872572--46872758	28	6.4	30	90	6	219	32	14	25	27	1.94
46872572--46872758	59	3.2	59	85	8	249	32	14	25	27	1.94
46874735--46874905	40	4.3	39	77	10	159	28	21	26	23	1.99
46882765--46882862	39	2.5	38	80	8	108	29	23	23	23	1.99
46882803--46882911	40	2.8	38	86	6	146	27	22	26	23	1.99
46882763--46882931	40	4.3	39	75	12	141	27	21	26	24	1.99
46890341--46890490	40	3.8	40	83	5	171	28	22	25	23	1.99
46890337--46890507	40	4.4	38	77	11	152	29	21	25	23	1.99
46899453--46899612	29	5.5	30	88	8	213	33	14	25	26	1.94
46899453--46899612	59	2.8	57	88	4	214	33	14	25	26	1.94
46901208--46901307	28	3.5	28	84	5	121	30	27	15	28	1.96
46901208--46901277	27	2.6	27	93	2	113	30	28	14	27	1.95
46907223--46907276	27	2.0	27	96	0	99	51	16	3	27	1.61
46909159--46909216	26	2.2	26	82	11	66	58	3	8	29	1.44
46909939--46910037	20	4.9	20	70	13	69	18	32	18	31	1.95
46909939--46910037	40	2.5	40	76	0	99	18	32	18	31	1.95
46910908--46910939	5	6.4	5	92	0	55	3	0	15	81	0.82
46910899--46910939	15	2.8	15	88	3	57	7	0	14	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46914116--46914248	66	2.0	66	86	2	187	26	12	24	37	1.90
46919310--46919342	12	2.8	12	100	0	66	54	0	21	24	1.45
46920118--46920146	13	2.3	13	94	5	51	17	0	0	82	0.66
46923355--46923422	21	3.2	21	78	12	77	32	22	30	14	1.94
46924891--46924998	26	4.2	26	89	0	171	34	7	22	36	1.82
46926453--46926516	26	2.4	26	84	5	74	31	26	14	28	1.95
46926621--46926761	54	2.6	53	92	2	219	17	23	23	35	1.95
46926621--46926779	27	5.9	27	81	11	175	18	23	22	35	1.96
46927960--46927994	18	1.9	18	100	0	70	37	17	11	34	1.85
46928613--46928846	35	6.5	34	75	9	137	46	16	14	22	1.84
46928613--46928761	35	4.2	35	77	8	138	48	17	12	21	1.79
46928610--46928831	73	3.1	72	79	3	207	47	16	12	23	1.81
46928641--46928831	35	5.3	35	75	6	150	47	17	12	23	1.81
46928638--46928853	73	3.0	72	79	7	233	45	16	13	24	1.84
46928741--46928853	36	3.1	35	83	3	136	40	15	17	25	1.90
46932077--46932124	10	4.6	10	77	10	51	31	2	6	60	1.33
46933010--46933057	24	2.0	24	84	12	62	52	2	37	8	1.44
46935789--46935845	10	5.5	10	78	15	53	57	5	1	35	1.31
46939874--46939901	5	5.6	5	100	0	56	42	0	0	57	0.99
46945775--46945928	27	5.5	27	82	4	173	28	14	25	31	1.95
46945825--46945928	55	1.9	55	100	0	208	26	13	24	35	1.92
46952967--46952996	2	15.0	2	92	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46953630--46953783	27	5.5	27	82	4	173	28	14	25	31	1.95
46953680--46953783	55	1.9	55	100	0	208	26	13	24	35	1.92
46957680--46957844	40	4.2	40	88	3	219	25	21	26	26	2.00
46963507--46963657	40	3.8	39	80	6	153	27	23	27	22	1.99
46963544--46963673	40	3.3	39	80	4	161	24	23	27	24	2.00
46969179--46969309	40	3.3	40	92	3	203	23	22	27	26	1.99
46978150--46978361	46	4.5	46	76	13	166	28	16	30	24	1.97
46986284--46986387	55	1.9	55	82	4	129	30	28	24	16	1.96
46993218--46993386	40	4.2	40	80	4	173	23	26	21	28	1.99
47001230--47001398	40	4.2	40	80	4	173	23	26	21	28	1.99
47011816--47011982	40	4.2	40	82	2	185	24	26	22	26	2.00
47017738--47017883	27	5.4	27	84	0	184	34	19	21	23	1.96
47019701--47019801	28	3.5	28	86	6	114	29	26	13	29	1.94
47019789--47019919	29	4.5	29	87	1	174	25	31	16	27	1.96
47027622--47027722	28	3.5	28	86	6	114	29	26	13	29	1.94
47027710--47027840	29	4.5	29	87	1	174	25	31	16	27	1.96
47029582--47029632	27	1.9	26	84	4	66	17	27	19	35	1.94
47035161--47035305	27	5.4	27	86	1	157	37	18	18	24	1.93
47036039--47036068	2	15.0	2	92	0	51	46	0	0	53	1.00
47038003--47038174	29	5.9	29	77	7	152	40	11	23	24	1.87
47038041--47038173	30	4.5	29	77	9	117	42	11	23	23	1.86
47038003--47038171	59	2.9	58	80	6	180	41	11	23	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47038009--47038174	88	1.9	88	85	0	233	40	11	23	24	1.88
47048755--47049002	40	6.2	40	88	1	329	23	20	29	27	1.99
47048755--47048981	120	1.9	120	91	1	375	23	20	29	26	1.99
47052410--47052880	235	2.0	237	96	2	869	35	8	19	35	1.83
47055576--47055821	49	4.9	50	82	4	291	26	17	26	29	1.98
47058171--47058225	27	2.0	27	96	0	101	34	20	7	38	1.80
47058688--47058746	23	2.6	23	91	0	100	25	33	27	13	1.93
47060215--47060296	43	1.9	43	84	0	110	26	26	18	28	1.98
47063514--47063637	43	2.9	43	80	8	128	29	29	16	24	1.97
47065228--47065329	25	4.1	25	75	8	66	30	20	23	25	1.99
47065244--47065305	25	2.5	25	86	0	88	30	24	22	22	1.99
47069751--47069791	2	20.5	2	100	0	82	51	0	0	48	1.00
47070890--47070955	26	2.5	26	80	9	73	25	3	9	62	1.40
47074021--47074051	15	2.1	15	100	0	62	48	6	19	25	1.72
47074879--47074914	18	1.9	18	88	5	54	27	2	0	69	1.02
47077974--47078013	21	2.0	21	85	5	55	35	10	5	50	1.58
47080683--47080874	40	4.8	39	74	10	147	23	28	23	25	2.00
47088687--47088826	40	3.5	40	84	4	142	22	27	25	25	2.00
47088695--47088879	79	2.3	82	82	7	220	23	27	23	24	2.00
47088766--47088879	40	2.9	38	75	8	111	24	28	21	26	1.99
47092367--47092439	24	3.0	24	95	0	128	32	20	24	21	1.97
47092504--47092635	47	2.8	48	77	11	135	27	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47094432--47094647	40	5.4	40	89	2	285	25	27	23	23	2.00
47102081--47102298	40	5.5	40	88	2	289	24	27	24	22	2.00
47111088--47111211	47	2.6	47	82	9	139	28	18	27	25	1.98
47115479--47115518	21	2.0	21	85	5	55	12	37	27	22	1.90
47119698--47119726	14	2.1	14	93	6	51	24	13	10	51	1.72
47119749--47119778	6	5.0	6	91	0	51	33	13	16	36	1.88
47128337--47128384	21	2.3	21	92	3	80	22	10	4	62	1.44
47128344--47128385	21	2.0	21	100	0	84	23	9	4	61	1.45
47132145--47132214	19	3.5	19	70	21	52	58	1	34	5	1.31
47132852--47132911	20	3.0	20	70	0	57	20	23	18	38	1.93
47132749--47132956	40	5.2	40	84	2	265	21	27	16	34	1.95
47134720--47134748	15	1.9	15	100	0	58	41	20	6	31	1.79
47135488--47135529	19	2.2	19	91	8	68	66	2	0	30	1.04
47135542--47135603	27	2.3	26	84	13	81	41	6	4	46	1.51
47135556--47135609	27	2.0	27	100	0	108	44	7	0	48	1.31
47157379--47157411	9	3.7	9	100	0	66	66	0	24	9	1.20
47161290--47161484	55	3.6	54	77	7	207	21	24	18	35	1.96
47161668--47161754	44	2.0	44	84	4	113	25	27	11	35	1.90
47178069--47178095	4	6.8	4	100	0	54	22	0	0	77	0.76
47185618--47185930	47	6.7	46	76	14	220	23	27	18	30	1.97
47185664--47185931	93	2.8	92	81	11	312	23	28	17	30	1.97
47188564--47188860	148	2.0	149	91	0	479	32	12	20	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47190348--47190376	13	2.3	13	94	5	51	37	0	17	44	1.49
47191759--47191889	23	5.7	23	71	7	86	22	12	22	41	1.88
47194339--47194406	33	2.1	33	100	0	136	51	2	2	42	1.32
47194978--47195040	21	2.9	21	76	19	65	49	0	1	49	1.10
47194979--47195038	24	2.7	23	77	17	63	50	0	1	48	1.11
47196810--47196851	18	2.3	18	87	4	57	50	0	2	47	1.14
47202647--47202700	27	2.0	27	92	0	90	25	22	22	29	1.99
47203115--47203151	13	2.8	13	91	0	56	32	0	16	51	1.45
47222362--47222513	80	1.9	80	82	2	189	23	29	24	22	1.99
47222403--47222513	40	2.8	39	85	9	136	22	28	25	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444