Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  426  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123150016--123150081
18
3.7
18
72
17
57
4
6
13
75
1.14
123150041--123150101
27
2.2
29
94
5
108
3
4
18
73
1.14
123151137--123151356
77
2.7
78
81
7
228
33
16
18
31
1.93
123150759--123151327
254
2.3
249
85
7
748
36
19
16
27
1.93
123151360--123151505
74
1.9
76
84
4
197
28
20
18
32
1.96
123151354--123151522
76
2.2
75
81
4
196
33
18
17
30
1.94
123151527--123151665
73
1.9
73
91
2
226
31
20
15
32
1.94
123151194--123151765
158
3.5
161
81
7
530
33
19
17
30
1.95
123151595--123151909
77
3.8
81
82
8
336
34
19
15
31
1.92
123151887--123152037
55
2.7
55
93
3
250
39
16
13
29
1.87
123151984--123152305
71
4.5
69
78
6
259
34
22
15
27
1.95
123151984--123152305
142
2.2
142
81
4
353
34
22
15
27
1.95
123161026--123161065
10
4.0
11
87
12
52
47
0
5
47
1.24
123161026--123161058
2
16.5
2
93
0
57
48
0
3
48
1.17
123162956--123163005
20
2.5
20
86
3
73
50
12
12
26
1.74
123164219--123164267
2
24.5
2
100
0
98
48
0
0
51
1.00
123176419--123176530
25
4.5
25
76
8
111
21
23
22
33
1.98
123176421--123176530
50
2.2
50
85
3
141
20
22
22
33
1.97
123177153--123177182
2
15.0
2
100
0
60
0
0
50
50
1.00
123179316--123179347
16
2.0
16
100
0
64
43
6
18
31
1.75
123186452--123186493
19
2.2
19
86
4
57
26
19
7
47
1.74
123194479--123194827
86
4.0
86
89
2
443
36
22
22
18
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123194507--123194832
44
7.6
42
70
14
209
34
22
23
18
1.96
123199558--123199595
19
2.0
19
100
0
76
26
31
5
36
1.79
123202969--123203018
25
2.0
25
96
0
91
12
18
8
62
1.53
123203275--123203321
16
3.0
16
78
3
51
44
6
8
40
1.60
123216297--123216483
40
4.7
40
83
7
238
24
21
27
26
1.99
123216297--123216481
79
2.3
79
82
8
232
24
22
27
26
2.00
123224346--123224532
40
4.7
40
85
7
240
24
21
27
26
1.99
123224346--123224530
79
2.3
80
83
8
234
24
21
27
25
1.99
123227219--123227325
53
2.0
53
100
0
214
43
11
14
29
1.81
123230444--123230510
32
2.1
32
94
0
116
28
14
29
26
1.96
123234143--123234197
27
2.0
27
100
0
110
49
21
3
25
1.66
123234587--123234645
19
3.1
19
78
9
75
32
25
23
18
1.97
123239226--123239281
13
4.3
13
74
17
53
35
1
23
39
1.65
123241562--123241609
16
3.1
17
82
14
59
47
0
4
47
1.21
123241583--123241626
14
3.1
14
80
9
54
50
0
0
50
1.00
123242384--123242435
26
2.0
26
100
0
104
15
23
7
53
1.67
123250307--123250344
14
2.6
15
84
16
53
26
0
5
68
1.11
123250479--123250544
25
2.5
25
82
7
69
27
12
7
53
1.65
123250535--123250587
27
2.0
27
85
7
72
30
5
1
62
1.29
123250654--123250678
13
1.9
13
100
0
50
24
8
0
68
1.16
123252682--123252727
19
2.4
18
79
10
56
23
19
10
45
1.82
123256784--123256912
64
2.0
65
89
1
197
30
17
14
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123256983--123257077
43
2.2
44
79
5
104
28
18
22
30
1.97
123256977--123257720
176
4.2
176
89
1
1069
28
19
22
29
1.98
123256977--123257700
353
2.1
352
89
0
1099
28
19
22
29
1.98
123257654--123257854
67
3.0
67
91
0
321
28
19
25
26
1.99
123259490--123259528
16
2.5
15
84
8
51
30
0
5
64
1.15
123259672--123259737
25
2.5
25
82
7
69
27
12
7
53
1.65
123259728--123259780
27
2.0
27
85
7
72
30
5
1
62
1.29
123259847--123259871
13
1.9
13
100
0
50
24
8
0
68
1.16
123263308--123263366
21
2.8
22
75
7
61
27
8
8
55
1.58
123265442--123265573
40
3.3
40
77
8
126
14
15
12
58
1.64
123265903--123266049
76
1.9
75
88
1
222
18
19
8
53
1.71
123265476--123266074
40
15.1
40
68
11
232
19
18
7
54
1.67
123265476--123266074
20
30.1
20
68
14
206
19
18
7
54
1.67
123266232--123266276
20
2.2
20
88
0
63
15
15
6
62
1.52
123279460--123279499
11
3.6
11
79
0
53
20
15
7
57
1.61
123279538--123279600
30
2.1
30
93
0
108
25
3
14
57
1.52
123283168--123283245
37
2.1
37
85
0
102
14
14
33
38
1.86
123284232--123284264
12
2.8
12
95
0
57
24
39
24
12
1.89
123288655--123288848
104
1.9
103
78
9
216
43
5
7
43
1.55
123291271--123291303
16
2.1
16
100
0
66
39
30
12
18
1.87
123298296--123298457
3
54.3
3
78
12
149
62
1
4
31
1.24
123298595--123298640
15
2.9
15
93
6
74
65
0
8
26
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123298573--123298660
15
5.6
16
72
22
55
62
0
7
29
1.23
123301948--123302058
47
2.4
47
84
6
154
35
23
16
25
1.95
123305349--123305374
12
2.2
12
100
0
52
26
0
0
73
0.84
123307974--123308006
15
2.2
15
94
0
57
54
0
0
45
0.99
123309536--123309575
21
1.9
21
89
0
62
12
55
17
15
1.70
123313164--123313220
25
2.3
26
79
14
66
64
3
0
31
1.10
123313168--123313218
24
2.1
23
82
7
57
64
3
0
31
1.11
123326629--123327099
43
10.7
43
68
14
237
29
21
23
25
1.99
123326620--123327194
133
4.3
133
95
1
1021
29
21
22
25
1.99
123326620--123327194
265
2.2
266
95
0
1028
29
21
22
25
1.99
123331885--123331924
17
2.4
17
86
0
53
32
2
5
60
1.32
123332024--123332080
27
2.1
28
77
9
64
38
3
0
57
1.16
123332034--123332089
27
2.1
27
86
3
78
39
1
0
58
1.08
123332097--123332190
26
3.6
26
79
2
89
28
5
7
58
1.47
123334434--123334760
50
6.5
50
92
0
528
35
16
22
26
1.95
123334753--123334844
46
2.0
46
89
0
139
27
21
22
28
1.99
123340087--123340137
26
2.0
26
92
7
86
41
5
9
43
1.62
123349039--123349087
19
2.6
19
83
0
62
73
0
26
0
0.83
123367922--123367967
23
2.0
23
95
0
83
39
15
17
28
1.90
123367980--123368035
23
2.3
25
85
11
73
5
17
0
76
0.96
123369426--123369492
20
3.2
20
68
15
64
41
5
8
43
1.60
123369394--123369502
42
2.6
42
91
2
168
43
9
6
41
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123369439--123369506
20
3.3
20
69
15
66
42
8
4
44
1.55
123369597--123369716
20
5.9
21
69
11
70
42
11
0
45
1.46
123382266--123382361
47
2.0
47
97
0
183
34
16
15
33
1.91
123403965--123404009
21
2.2
21
88
4
65
62
6
6
24
1.44
123404560--123404633
20
3.9
19
76
15
66
31
4
2
62
1.28
123404546--123404633
9
9.4
9
73
15
72
28
4
3
63
1.30
123407626--123407689
22
2.9
22
76
0
74
59
7
3
29
1.41
123408247--123408280
16
2.2
16
89
5
52
5
8
8
76
1.15
123409926--123409977
26
2.0
26
100
0
104
23
7
19
50
1.73
123410618--123410673
24
2.3
24
96
0
103
35
14
14
35
1.86
123411568--123411813
118
2.1
118
93
1
422
32
19
18
29
1.96
123430321--123430366
13
3.5
13
84
3
56
82
0
17
0
0.67
123431533--123431600
15
4.5
15
70
14
50
50
10
2
36
1.52
123436234--123436317
44
1.9
44
85
9
118
47
8
11
32
1.70
123456389--123456446
25
2.3
25
88
5
82
70
1
0
27
0.97
123456415--123456478
21
3.1
22
82
8
73
70
6
0
23
1.10
123456525--123456557
15
2.1
16
88
11
50
69
0
0
30
0.88
123462857--123462891
17
2.1
17
100
0
70
28
5
17
48
1.69
123462888--123462926
20
2.0
20
85
10
53
48
2
0
48
1.15
123465117--123465155
18
2.4
17
84
16
55
46
0
0
53
1.00
123476090--123476120
16
1.9
16
93
0
53
29
3
3
64
1.25
123482165--123482213
21
2.3
22
82
10
57
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123483235--123483293
31
1.9
31
93
6
102
25
5
5
64
1.35
123484102--123484164
21
3.1
21
80
8
60
68
7
0
23
1.16
123484211--123484243
15
2.1
16
88
11
50
69
0
0
30
0.88
123487329--123487408
39
2.1
39
100
0
160
30
17
12
40
1.86
123488547--123488645
48
2.1
48
100
0
198
44
10
22
23
1.83
123507200--123507232
13
2.6
13
90
4
50
54
3
0
42
1.15
123508441--123508471
12
2.6
12
94
0
53
35
16
12
35
1.87
123508654--123508712
30
2.0
30
86
0
82
27
3
13
55
1.54
123510263--123510301
21
1.9
20
84
5
51
46
33
10
10
1.72
123513549--123513609
31
2.0
31
90
0
95
36
8
6
49
1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444