genome.fa.s10.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  168  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46360894--46361001	27	3.9	27	77	13	85	32	7	17	42	1.77
46360958--46361081	27	4.6	27	79	4	133	28	7	20	43	1.78
46361254--46361288	17	2.0	18	94	5	63	17	34	28	20	1.95
46361258--46361307	17	2.9	17	85	5	57	16	36	26	22	1.94
46367468--46367582	54	2.1	54	85	0	158	36	15	20	27	1.93
46367476--46367583	27	4.0	27	85	0	135	35	17	21	25	1.95
46367784--46367871	27	3.3	26	84	4	104	19	26	19	35	1.95
46367993--46368055	25	2.5	25	86	0	81	20	17	14	47	1.82
46368037--46368068	12	2.7	12	90	0	55	21	12	9	56	1.64
46370782--46370816	14	2.5	14	90	0	52	22	42	0	34	1.54
46372001--46372076	22	3.5	22	67	7	64	42	25	15	17	1.88
46372002--46372103	44	2.3	44	89	0	159	39	22	15	22	1.92
46372024--46372106	22	3.8	22	70	0	76	36	20	18	25	1.95
46372406--46372467	27	2.3	27	85	0	79	29	12	16	41	1.85
46372447--46372846	27	14.9	27	77	6	328	31	10	20	37	1.86
46372418--46372846	81	5.3	81	79	9	446	31	10	20	37	1.87
46372419--46372867	54	8.3	53	77	8	376	30	10	21	37	1.87
46380578--46380661	43	2.0	43	82	0	105	29	32	19	19	1.96
46381973--46382082	47	2.3	47	84	3	159	35	31	12	20	1.90
46388896--46388941	11	4.5	11	78	13	53	32	19	13	34	1.90
46388978--46389026	25	2.0	25	87	0	71	26	14	22	36	1.92
46392812--46392837	13	2.0	13	100	0	52	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46394212--46394416	40	5.2	40	94	2	335	24	21	26	27	1.99
46396044--46396337	55	5.5	53	80	7	306	23	23	17	34	1.96
46396044--46396337	108	2.7	107	90	2	435	23	23	17	34	1.96
46398057--46398202	40	3.7	39	75	9	118	25	21	27	25	2.00
46398104--46398244	40	3.5	40	75	7	117	28	22	26	22	1.99
46398106--46398270	79	2.1	79	79	4	172	28	21	26	23	1.99
46406106--46406257	40	3.8	40	80	4	171	25	23	26	25	2.00
46406107--46406288	80	2.3	81	80	6	210	26	24	25	23	2.00
46406155--46406299	40	3.6	39	80	10	143	28	24	25	22	1.99
46413642--46413944	55	5.6	54	82	9	341	22	24	17	35	1.95
46413642--46413937	108	2.7	108	90	2	443	22	23	18	34	1.96
46423856--46424247	27	14.6	27	79	4	274	38	17	10	32	1.85
46424271--46424367	27	3.6	26	68	9	61	38	20	19	21	1.94
46424271--46424339	27	2.6	27	81	9	70	39	21	18	20	1.93
46424512--46424598	27	3.2	26	83	6	102	19	21	21	36	1.95
46424680--46424723	21	2.1	21	95	0	79	9	6	47	36	1.62
46424781--46424851	33	2.1	34	89	2	108	25	22	26	25	2.00
46424755--46424851	28	3.3	28	77	13	95	22	23	26	26	2.00
46429816--46429933	41	3.1	41	60	28	98	32	17	28	21	1.96
46429784--46429947	71	2.3	71	100	0	328	35	17	28	18	1.94
46437347--46437461	40	3.1	40	59	31	92	34	15	27	21	1.94
46437326--46437488	70	2.3	71	98	1	319	35	17	27	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46444533--46444700	40	4.2	40	79	6	162	23	26	23	26	2.00
46452528--46452694	40	4.2	40	82	2	185	25	27	21	25	1.99
46452528--46452694	80	2.1	79	83	7	205	25	27	21	25	1.99
46453520--46453565	17	2.5	19	74	22	53	34	23	17	23	1.96
46454423--46454668	40	6.2	40	91	5	374	28	26	20	23	1.99
46456046--46456071	13	2.0	13	100	0	52	61	7	0	30	1.24
46461324--46461348	13	1.9	13	100	0	50	16	32	24	28	1.96
46470371--46470542	93	1.8	93	94	0	308	27	30	22	19	1.98
46470363--46470538	46	3.8	46	81	10	223	28	30	21	19	1.98
46484492--46484741	47	5.4	47	89	1	362	32	8	30	28	1.86
46486596--46486900	39	7.8	40	92	4	496	21	22	30	24	1.99
46490831--46491083	47	5.4	47	90	0	371	33	8	30	28	1.86
46496524--46496602	21	3.8	20	90	6	122	26	27	8	36	1.86
46496524--46496680	48	3.4	44	86	5	192	28	28	10	33	1.89
46496614--46496655	21	2.0	21	90	0	66	26	30	11	30	1.92
46496554--46496680	27	5.2	26	69	21	94	29	29	10	31	1.90
46500894--46501039	39	3.7	39	88	6	188	23	23	28	24	2.00
46508946--46509094	39	3.8	38	90	5	201	24	22	28	24	1.99
46508946--46509128	39	4.7	39	86	7	189	23	22	27	25	2.00
46511505--46511536	13	2.5	13	100	0	64	43	9	6	40	1.62
46522053--46522120	29	2.4	28	76	18	68	52	4	5	36	1.46
46522125--46522221	31	3.1	31	80	12	101	56	8	2	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46522148--46522381	23	10.2	23	72	18	152	56	6	3	32	1.42
46522188--46522388	94	2.2	90	79	12	205	56	6	3	32	1.43
46522505--46522578	22	3.2	23	78	18	73	59	6	2	31	1.37
46522542--46522627	41	2.3	35	78	18	93	60	4	2	32	1.30
46522503--46522627	12	10.5	11	68	24	58	60	6	3	30	1.38
46522765--46522841	3	25.7	3	97	0	145	64	1	0	33	1.01
46524148--46524210	28	2.2	29	97	2	119	22	1	39	36	1.64
46524914--46525333	73	5.5	75	76	12	363	33	18	15	32	1.93
46526874--46526941	34	2.0	34	97	0	127	29	19	17	33	1.95
46533122--46533156	18	1.9	18	88	0	52	45	5	22	25	1.74
46536999--46537086	31	2.8	31	80	13	101	55	7	2	34	1.41
46537062--46537254	25	8.5	22	74	17	146	56	5	4	32	1.43
46537127--46537254	45	2.8	47	80	14	151	58	5	3	32	1.36
46537380--46537703	24	14.1	24	68	20	96	56	6	3	33	1.41
46537421--46537505	13	6.5	13	70	24	54	60	4	2	32	1.30
46537585--46537640	23	2.5	22	79	2	58	51	7	5	35	1.52
46537641--46537702	3	20.7	3	100	0	124	66	0	0	33	0.92
46539012--46539075	29	2.2	29	97	0	119	23	0	40	35	1.55
46539724--46539759	14	2.7	13	91	8	63	47	5	13	33	1.67
46539606--46539815	88	2.4	86	86	2	276	36	20	14	28	1.92
46539781--46540149	74	4.8	74	72	15	243	33	18	16	31	1.93
46540018--46540169	73	2.1	74	82	6	184	32	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46542154--46542218	29	2.3	28	77	15	71	50	4	6	38	1.48
46542223--46542310	31	2.8	31	80	13	101	55	7	2	34	1.41
46542286--46542479	25	8.5	22	73	15	137	56	5	5	33	1.44
46542578--46542651	22	3.2	23	78	18	73	59	6	2	31	1.37
46542615--46542701	40	2.3	36	78	16	95	59	4	2	33	1.30
46542664--46542727	22	2.8	23	79	6	67	53	4	4	37	1.43
46542615--46542701	13	6.9	13	72	20	60	59	4	2	33	1.30
46544484--46544635	40	3.8	40	89	4	200	25	20	27	26	1.99
46552491--46552634	40	3.6	40	90	2	220	24	22	27	26	2.00
46554039--46554264	3	73.7	3	69	17	78	61	4	3	30	1.32
46556111--46556495	27	14.3	27	83	1	448	40	19	8	31	1.82
46556104--46556478	54	6.9	54	90	1	574	40	20	8	31	1.81
46556111--46556561	81	5.6	80	79	3	420	39	20	8	31	1.83
46556111--46556616	27	18.7	27	78	3	360	39	19	8	32	1.83
46556598--46556871	27	10.3	27	89	1	374	33	20	20	24	1.97
46556850--46556909	30	2.0	30	100	0	120	23	20	20	36	1.95
46557328--46557381	22	2.5	22	73	11	56	22	22	20	35	1.96
46557328--46557392	22	3.0	21	71	13	51	21	21	21	35	1.96
46557548--46557648	27	3.8	26	84	5	103	19	22	19	37	1.94
46557785--46557895	6	17.8	6	66	17	57	19	17	14	48	1.81
46557785--46557895	31	3.5	31	86	1	141	19	17	14	48	1.81
46558625--46558688	29	2.2	29	94	0	110	25	0	39	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46559337--46559372	14	2.7	13	91	8	63	47	5	13	33	1.67
46559392--46559740	75	4.5	76	76	12	334	32	18	16	32	1.94
46559628--46559786	73	2.2	72	83	7	187	28	19	18	32	1.96
46562036--46562100	29	2.3	28	77	15	71	50	4	6	38	1.48
46562105--46562192	31	2.8	31	80	13	101	55	7	2	34	1.41
46562168--46562288	23	5.5	22	72	18	83	57	4	3	33	1.36
46562450--46562527	14	6.0	13	69	20	56	60	3	2	33	1.28
46564014--46564077	29	2.2	29	85	0	92	21	1	37	39	1.63
46567036--46567163	43	3.0	43	81	4	168	25	16	26	31	1.96
46569257--46569418	77	2.1	77	94	0	279	32	24	14	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444