genome.fa.s10.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  173  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47853403--47853453	21	2.4	21	77	6	59	1	47	19	31	1.61
47859097--47859322	9	24.6	9	75	9	143	38	0	12	47	1.48
47859097--47859322	18	12.3	18	76	9	161	38	0	12	47	1.48
47859150--47859322	27	6.2	27	77	10	159	38	1	13	46	1.50
47859073--47859294	114	1.9	114	86	3	313	38	0	12	47	1.48
47859427--47859482	15	3.8	15	78	21	73	53	0	0	46	1.00
47859658--47859725	24	2.8	24	84	8	93	47	7	17	27	1.74
47860617--47860916	126	2.4	128	94	1	523	48	3	10	38	1.55
47860617--47860916	64	4.7	64	95	1	523	48	3	10	38	1.55
47863880--47863915	16	2.2	16	90	5	54	72	5	0	22	1.05
47864277--47864348	7	10.0	7	76	5	63	41	34	1	22	1.62
47864185--47864374	79	2.4	79	84	2	256	36	37	2	23	1.67
47864272--47864347	29	2.6	29	78	12	84	39	35	1	23	1.63
47864277--47864345	22	3.2	21	79	6	66	42	34	1	21	1.62
47864185--47864418	79	2.9	79	82	3	202	37	35	2	24	1.68
47864577--47864614	16	2.5	15	87	8	51	44	31	0	23	1.54
47864848--47864898	14	3.6	14	71	12	50	25	3	25	45	1.71
47865373--47865481	42	2.6	43	82	7	125	32	22	15	30	1.95
47866294--47866350	16	3.6	16	78	4	62	26	12	42	19	1.86
47867051--47867534	108	4.5	108	81	3	508	36	13	20	29	1.91
47867051--47867534	54	9.0	54	78	5	431	36	13	20	29	1.91
47867070--47867525	162	2.8	162	80	3	513	37	13	19	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47868863--47868906	20	2.1	22	87	8	65	15	4	13	65	1.41
47869733--47869835	56	1.9	51	82	9	125	31	5	2	60	1.35
47870163--47870220	22	2.5	24	80	8	66	25	5	6	62	1.42
47882148--47882216	27	2.5	27	92	2	111	30	28	14	26	1.95
47885284--47885526	44	5.5	44	65	8	136	28	24	17	29	1.97
47885277--47885605	88	3.8	88	90	2	475	30	23	18	27	1.98
47885607--47885769	45	3.6	45	82	2	186	29	19	23	27	1.98
47885607--47885769	89	1.8	89	83	1	218	29	19	23	27	1.98
47887315--47887453	27	5.2	27	74	14	119	35	4	2	58	1.30
47887325--47887430	52	2.0	53	83	8	137	34	5	1	57	1.33
47887349--47887467	57	2.2	52	81	14	143	32	5	2	59	1.32
47887789--47887832	22	2.0	22	86	0	61	29	6	6	56	1.51
47890150--47890176	2	13.5	2	100	0	54	48	0	0	51	1.00
47890178--47890209	2	16.0	2	100	0	64	0	0	50	50	1.00
47892181--47892236	28	2.0	29	89	3	87	30	25	10	33	1.90
47893679--47894168	50	10.0	48	82	4	302	28	19	27	24	1.98
47893737--47894163	50	8.6	50	86	3	544	29	20	27	22	1.98
47893677--47894166	150	3.3	150	84	3	591	28	19	27	24	1.98
47905263--47905365	29	3.6	29	81	2	118	21	16	33	29	1.95
47915137--47915188	25	2.1	25	85	0	68	38	15	9	36	1.80
47921203--47921232	16	1.9	15	93	6	51	30	23	0	46	1.52
47921444--47921720	49	5.5	49	81	5	270	32	27	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47921436--47921720	150	1.9	151	87	2	421	32	27	15	24	1.96
47921488--47921724	101	2.3	101	83	1	278	32	26	15	25	1.96
47924617--47924703	37	2.3	36	90	5	138	25	33	20	20	1.97
47924772--47925269	49	10.2	49	94	2	851	29	29	9	32	1.88
47928541--47928596	15	3.7	15	82	0	67	55	14	17	12	1.69
47941910--47941981	37	1.9	37	81	15	87	45	18	9	26	1.80
47943111--47943195	42	2.0	42	100	0	170	41	7	11	40	1.69
47953513--47953542	16	1.9	16	93	6	53	33	23	0	43	1.54
47953740--47953983	50	4.9	50	78	5	242	30	25	16	27	1.97
47956044--47956123	41	2.0	41	85	5	108	25	28	28	17	1.97
47960348--47960387	20	2.0	20	90	0	62	5	27	22	45	1.73
47960884--47960915	16	2.0	16	100	0	64	25	12	25	37	1.91
47962753--47962777	13	1.9	13	100	0	50	16	4	16	64	1.44
47963446--47963571	47	2.7	44	84	11	155	28	16	30	23	1.96
47964888--47964995	37	2.9	37	100	0	216	22	32	17	27	1.96
47966390--47966572	39	4.6	39	87	0	240	22	30	22	24	1.99
47968233--47968413	50	3.6	51	82	8	223	27	18	30	23	1.98
47976056--47976208	24	6.4	24	95	2	254	26	22	22	29	1.99
47976259--47976318	20	3.0	20	90	0	102	33	20	11	35	1.88
47976361--47976408	25	1.9	25	86	0	69	25	16	25	33	1.96
47977645--47977936	27	10.8	27	85	5	331	41	8	22	28	1.83
47977926--47978164	27	8.9	27	84	5	202	30	8	21	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47977849--47978009	54	3.0	54	81	3	153	36	11	21	31	1.89
47977932--47978143	81	2.6	81	83	5	241	30	8	20	40	1.82
47977986--47978164	27	6.7	27	90	0	234	30	7	20	41	1.79
47983176--47983221	22	2.1	22	91	0	74	32	19	15	32	1.93
47986576--47986670	48	2.0	48	85	0	127	24	18	14	42	1.88
47997377--47997409	17	1.9	17	100	0	66	57	12	12	18	1.64
48000665--48000787	62	2.0	63	88	1	185	32	17	8	41	1.79
48027045--48027088	22	2.0	22	100	0	88	27	4	22	45	1.72
48035281--48035362	39	2.1	39	93	0	137	32	13	25	28	1.93
48036950--48036975	13	2.0	13	100	0	52	38	0	30	30	1.58
48041992--48042217	40	5.7	40	89	4	273	26	21	26	25	2.00
48062264--48062539	46	6.0	46	94	0	426	21	23	14	40	1.89
48066586--48066943	47	7.6	47	75	11	265	27	19	29	23	1.98
48066678--48066890	45	4.5	46	77	11	168	26	18	30	24	1.98
48074313--48074668	47	7.6	49	74	14	245	28	18	29	23	1.98
48075714--48075777	31	2.1	31	90	0	101	34	17	18	29	1.94
48075848--48075886	21	1.9	21	89	5	62	10	38	28	23	1.87
48082760--48082903	66	2.2	66	93	0	243	19	37	20	22	1.94
48089102--48089172	28	2.5	28	86	4	88	30	23	5	39	1.78
48089275--48089377	41	2.5	42	82	3	118	53	21	0	24	1.52
48089308--48089377	22	3.3	22	76	11	83	48	25	1	24	1.59
48089810--48089855	19	2.4	19	92	7	76	47	2	2	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48090148--48090226	42	1.9	42	84	2	106	53	6	5	35	1.48
48092029--48092066	20	1.9	20	94	0	67	10	2	10	76	1.12
48096970--48097336	191	1.9	192	96	2	675	31	18	22	28	1.97
48107197--48107241	23	1.9	24	86	13	67	51	11	11	26	1.71
48113150--48113234	42	2.0	42	100	0	170	25	16	21	36	1.94
48113906--48113944	21	1.9	21	94	5	71	17	25	41	15	1.89
48114187--48114219	13	2.5	13	100	0	66	30	39	24	6	1.79
48115173--48115600	48	8.9	48	83	1	482	26	26	17	29	1.97
48115178--48115600	96	4.4	96	86	1	544	26	26	17	29	1.97
48115178--48115600	191	2.2	192	87	1	598	26	26	17	29	1.97
48127646--48127791	50	2.9	50	82	9	190	28	27	15	29	1.96
48130152--48130240	29	3.1	30	80	6	112	25	28	14	31	1.95
48137631--48137662	15	2.0	17	88	11	50	25	21	18	34	1.96
48140885--48140916	16	2.0	16	93	0	55	50	34	6	9	1.60
48144070--48144237	40	4.2	40	80	3	187	25	27	22	25	2.00
48144061--48144237	80	2.2	80	82	5	207	24	27	22	25	2.00
48152138--48152305	40	4.2	40	82	2	196	25	27	22	25	2.00
48158078--48158139	30	2.1	30	90	0	97	25	4	12	56	1.56
48160201--48160233	7	4.7	7	92	0	57	18	0	39	42	1.50
48163481--48163733	68	3.9	64	77	10	219	30	16	28	24	1.97
48164805--48164837	2	16.5	2	100	0	66	48	0	0	51	1.00
48181523--48181707	40	4.6	40	92	1	300	27	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48188737--48188885	40	3.7	40	91	3	246	25	27	22	24	2.00
48199350--48199573	40	5.6	40	84	6	283	25	26	23	24	2.00
48199350--48199573	83	2.8	80	86	5	283	25	26	23	24	2.00
48203290--48203523	47	5.0	47	90	0	351	26	28	8	35	1.87
48203496--48203553	30	1.9	30	96	0	107	20	29	13	36	1.91
48203448--48203600	77	2.0	77	100	0	306	24	28	10	35	1.89
48203405--48203647	124	2.0	124	93	0	414	25	27	10	35	1.89
48203526--48203661	47	2.9	47	95	0	245	26	27	9	36	1.88
48207871--48207905	13	2.7	13	90	0	52	22	22	42	11	1.85
48211064--48211259	14	13.9	14	71	8	67	24	1	34	40	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444