genome.fa.s10.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  227  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63912680--63912718	16	2.4	17	91	4	62	48	30	5	15	1.66
63913992--63914050	16	3.7	16	86	0	73	50	15	22	11	1.76
63914006--63914050	8	5.6	8	81	0	54	48	13	24	13	1.78
63914264--63914329	28	2.3	28	84	7	89	27	13	27	31	1.94
63917652--63917682	2	15.5	2	100	0	62	48	0	0	51	1.00
63921266--63921549	49	5.7	49	78	4	273	31	26	18	24	1.97
63921267--63921551	101	2.8	100	78	4	297	31	25	18	24	1.97
63927394--63927426	2	16.5	2	93	0	57	48	0	3	48	1.17
63929652--63929706	21	2.6	21	97	0	101	27	25	30	16	1.96
63930841--63930963	47	2.6	48	82	8	130	25	30	16	27	1.96
63930845--63931092	130	1.9	130	83	4	322	25	29	16	29	1.96
63936716--63936748	16	2.1	16	100	0	66	36	42	9	12	1.74
63937307--63937374	27	2.6	27	80	2	75	26	29	22	22	1.99
63937402--63937427	11	2.4	11	100	0	52	53	19	0	26	1.45
63937814--63937890	27	2.9	27	90	0	109	24	18	22	35	1.96
63937817--63938147	54	6.1	54	81	3	206	31	10	18	39	1.85
63937855--63938224	81	4.6	81	81	4	397	32	9	18	39	1.83
63937857--63938224	54	6.8	54	82	4	386	32	8	18	39	1.82
63937857--63938224	27	13.7	27	80	5	343	32	8	18	39	1.82
63938531--63938604	28	2.6	28	89	2	103	27	35	16	21	1.94
63942921--63943023	29	3.6	29	81	2	118	21	16	33	29	1.95
63946407--63946444	12	3.2	12	85	7	51	7	31	0	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63946407--63946442	11	3.2	11	92	4	54	8	30	0	61	1.26
63950396--63950658	47	5.7	46	71	13	193	21	17	30	30	1.97
63950389--63950651	93	2.9	92	90	1	404	21	18	30	29	1.97
63957187--63957279	42	2.2	42	100	0	186	21	32	24	21	1.98
63968693--63968760	3	22.7	3	78	0	64	29	10	0	60	1.30
63973048--63973092	22	2.0	22	91	0	72	33	2	15	48	1.57
63977625--63977664	11	3.6	11	80	12	55	30	0	15	55	1.41
63977620--63977664	22	2.0	22	100	0	90	31	0	17	51	1.46
63977866--63977916	25	2.0	25	100	0	102	23	19	11	45	1.83
63983059--63983262	40	5.2	40	93	2	333	26	27	22	24	1.99
63983059--63983262	79	2.6	80	92	3	333	26	27	22	24	1.99
63990055--63990259	40	5.2	40	92	1	333	26	27	21	24	2.00
63993815--63993924	41	2.7	41	71	10	98	31	30	18	20	1.96
63995074--63995106	15	2.2	16	89	10	52	54	21	0	24	1.45
63995492--63995560	22	3.1	22	91	0	111	46	18	20	14	1.84
64000360--64000402	22	2.0	22	85	0	59	32	27	25	13	1.94
64000660--64000716	27	2.1	27	90	0	87	26	17	21	35	1.95
64002157--64002185	13	2.2	13	100	0	58	48	6	20	24	1.74
64007004--64007178	45	3.8	46	79	13	216	29	29	20	20	1.98
64007011--64007181	93	1.8	92	96	1	315	28	29	21	21	1.98
64015897--64015966	27	2.5	28	88	2	106	31	25	14	28	1.95
64020375--64020584	40	5.2	40	87	2	305	25	24	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64027059--64027228	40	4.2	40	84	3	225	25	24	28	21	1.99
64032347--64032416	27	2.5	28	88	2	106	31	25	14	28	1.95
64034257--64034342	46	1.9	45	85	4	120	30	27	19	22	1.98
64038971--64039036	25	2.6	24	78	4	60	31	24	22	21	1.98
64038979--64039040	25	2.4	25	83	2	70	30	24	19	25	1.98
64039090--64039146	20	3.0	20	87	10	75	33	19	8	38	1.82
64039842--64039906	27	2.4	27	84	5	87	20	24	20	35	1.96
64039960--64040189	27	8.4	27	74	9	135	31	7	20	40	1.80
64039937--64040175	54	4.4	54	74	6	212	30	7	19	41	1.80
64039937--64040216	54	5.1	54	73	8	190	31	7	21	39	1.82
64040140--64040335	81	2.4	81	85	0	275	34	8	24	32	1.85
64040168--64040324	27	5.8	27	92	0	251	36	8	25	29	1.85
64040033--64040337	27	11.3	27	81	5	197	32	7	23	36	1.84
64045114--64045144	2	15.5	2	100	0	62	51	0	0	48	1.00
64047130--64047175	24	1.9	24	90	0	74	50	19	17	13	1.78
64047391--64047505	29	4.0	28	85	2	131	26	14	30	28	1.95
64047404--64047514	58	1.9	57	85	1	150	25	15	31	27	1.95
64050336--64050432	30	3.2	30	69	5	79	28	27	14	28	1.95
64052092--64052255	29	5.7	29	94	0	274	29	22	15	32	1.95
64052093--64052282	87	2.2	87	87	1	265	28	25	15	30	1.96
64060141--64060238	29	3.4	29	88	0	133	28	24	15	31	1.95
64060202--64060279	41	1.9	41	100	0	156	28	24	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64060239--64060317	29	2.7	29	100	0	158	29	22	15	32	1.95
64060171--64060308	70	2.0	70	97	0	258	29	22	13	34	1.93
64060142--64060337	99	2.0	99	86	2	277	28	26	14	31	1.95
64062145--64062169	13	1.9	13	100	0	50	16	32	16	36	1.90
64064713--64064827	27	4.3	26	79	6	88	22	19	18	40	1.92
64064822--64065135	27	11.7	27	88	2	443	37	15	13	33	1.87
64075636--64075849	40	5.4	40	78	8	197	24	22	27	25	2.00
64075636--64075849	80	2.7	81	83	6	251	24	22	27	25	2.00
64075636--64075813	40	4.4	40	83	3	223	24	23	27	24	2.00
64082610--64082652	17	2.5	17	100	0	86	20	25	39	13	1.90
64084124--64084174	18	2.8	18	75	0	57	33	19	23	23	1.97
64084528--64084643	27	4.3	27	80	4	126	24	19	16	39	1.91
64084632--64085032	27	14.9	27	82	9	382	37	15	14	32	1.88
64084632--64085032	81	5.0	81	85	4	506	37	15	14	32	1.88
64084638--64085032	54	7.3	54	85	1	542	37	15	14	32	1.88
64094693--64095179	47	10.4	47	93	0	814	28	30	8	33	1.86
64102950--64103159	40	5.2	40	88	2	305	21	28	24	25	1.99
64110990--64111172	40	4.6	40	80	4	176	23	26	22	27	1.99
64113632--64113797	80	2.1	81	87	1	235	25	25	22	26	2.00
64113632--64113798	40	4.2	40	84	2	201	25	25	22	26	2.00
64121033--64121188	40	3.9	39	85	2	177	26	24	21	27	1.99
64121024--64121198	80	2.2	80	84	3	217	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64121052--64121188	40	3.4	40	87	1	193	27	25	21	25	2.00
64126211--64126421	46	4.6	45	79	8	205	26	19	31	21	1.98
64126211--64126421	92	2.3	89	82	5	235	26	19	31	21	1.98
64126261--64126464	46	4.5	43	82	11	171	25	20	30	23	1.98
64126261--64126427	90	1.8	91	84	5	221	25	20	31	22	1.98
64134603--64134786	40	4.6	40	84	2	244	25	22	26	25	2.00
64134603--64134822	80	2.8	80	84	5	270	24	22	26	25	2.00
64136603--64136636	16	2.1	16	100	0	68	50	17	8	23	1.74
64141854--64141878	11	2.3	11	100	0	50	20	8	36	36	1.82
64160691--64160804	58	2.0	58	100	0	228	30	1	28	38	1.67
64161757--64161973	39	5.6	39	92	1	330	20	23	28	27	1.99
64163652--64163702	21	2.4	21	96	0	93	41	15	15	27	1.88
64165905--64166030	40	3.2	40	91	1	191	26	27	21	23	1.99
64171345--64171501	24	6.6	23	86	7	206	34	23	17	24	1.96
64171345--64171501	48	3.3	47	93	3	260	34	23	17	24	1.96
64171367--64171501	72	1.9	72	95	0	243	35	24	17	22	1.95
64177017--64177141	40	3.2	40	91	3	200	26	28	22	23	1.99
64182245--64182472	114	2.0	113	93	0	384	34	23	12	29	1.92
64182243--64182477	56	4.2	56	91	2	364	33	23	13	29	1.93
64186073--64186136	33	2.0	33	84	9	87	28	26	20	25	1.99
64188802--64188830	15	1.9	15	100	0	58	58	0	0	41	0.98
64188925--64188968	19	2.4	18	85	7	54	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64192131--64192305	56	3.2	55	87	3	253	33	22	14	29	1.94
64196815--64196964	39	3.8	39	79	7	169	24	26	22	26	2.00
64196800--64196962	79	2.1	79	82	6	197	23	26	23	26	2.00
64197664--64197689	2	13.0	2	100	0	52	50	0	0	50	1.00
64204829--64205007	80	2.2	81	84	4	229	22	26	24	26	2.00
64204829--64205009	40	4.5	40	81	6	197	23	25	24	26	2.00
64205707--64205733	2	13.5	2	100	0	54	51	0	0	48	1.00
64209563--64209619	28	2.0	28	100	0	114	24	10	24	40	1.87
64211891--64211968	29	2.7	29	83	0	102	21	33	17	26	1.96
64219702--64219779	29	2.7	29	83	0	102	21	33	17	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444