genome.fa.s10.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  182  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50940510--50940671	54	2.9	56	86	5	240	30	16	28	25	1.96
50940532--50940699	56	3.0	56	83	6	157	31	17	27	23	1.97
50943322--50943514	47	4.0	48	79	6	185	24	16	29	30	1.96
50946254--50946408	56	2.8	56	74	7	152	35	14	23	26	1.94
50948777--50948816	13	2.8	15	85	11	57	50	0	0	50	1.00
50948836--50948880	22	2.1	21	83	4	54	57	0	2	40	1.11
50948837--50948867	15	2.0	16	93	6	55	61	0	0	38	0.96
50949670--50949715	19	2.5	19	86	6	60	47	13	0	39	1.42
50950699--50950760	20	3.0	20	71	2	61	61	4	1	32	1.27
50953325--50953351	12	2.2	12	100	0	54	33	0	14	51	1.43
50958788--50958835	25	1.9	25	86	0	69	33	25	16	25	1.96
50958879--50958937	20	3.0	20	94	0	100	35	11	22	30	1.90
50958988--50959106	24	5.0	24	89	5	161	27	22	22	26	1.99
50958989--50959081	47	2.0	47	93	0	159	25	23	22	27	2.00
50959298--50959392	31	3.1	31	98	0	181	38	15	22	23	1.92
50966256--50966303	25	1.9	25	86	0	69	33	25	16	25	1.96
50966347--50966405	20	3.0	20	94	0	100	35	11	22	30	1.90
50966456--50966574	24	5.0	24	89	5	161	27	22	22	26	1.99
50966457--50966549	47	2.0	47	93	0	159	25	23	22	27	2.00
50966766--50966860	31	3.1	31	98	0	181	38	15	22	23	1.92
50967997--50968082	46	1.9	45	83	4	111	30	26	19	23	1.98
50974560--50974595	7	5.0	7	86	6	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50974554--50974595	22	1.9	22	90	0	66	64	2	0	33	1.07
50974581--50974703	17	7.6	17	69	21	77	63	1	5	29	1.27
50974604--50974679	24	3.2	24	75	17	77	64	1	5	28	1.23
50974640--50974697	29	2.0	28	83	3	71	68	3	1	25	1.14
50976236--50977032	44	18.3	44	83	2	944	25	25	17	31	1.97
50989129--50989269	7	19.7	7	64	22	53	63	0	5	29	1.22
50989150--50989273	17	7.6	17	75	17	95	63	0	5	29	1.23
50989173--50989250	24	3.3	24	76	18	83	65	0	5	29	1.14
50991310--50991337	2	14.0	2	100	0	56	50	0	0	50	1.00
50993324--50993407	42	2.0	42	97	0	159	33	4	22	39	1.75
50993717--50993894	41	4.3	41	85	5	225	21	20	23	34	1.96
50993717--50993895	84	2.2	82	82	6	227	21	20	23	34	1.96
51000382--51000507	41	3.1	41	90	4	184	17	19	27	35	1.94
51002104--51002221	19	6.2	19	67	23	70	63	2	3	30	1.24
51002175--51002235	31	2.0	30	87	3	86	68	0	3	27	1.05
51002204--51002271	25	2.6	25	75	13	66	58	0	7	33	1.26
51002360--51002569	3	69.3	3	67	23	70	61	1	2	33	1.21
51002438--51002496	23	2.6	23	100	0	118	57	0	0	42	0.98
51003523--51003549	13	2.1	13	100	0	54	22	29	33	14	1.94
51004262--51004757	194	2.5	199	88	4	720	27	22	19	30	1.98
51004729--51004836	44	2.4	44	84	6	137	26	26	15	30	1.96
51016930--51017046	20	6.2	19	67	25	70	63	2	3	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51016956--51017060	31	3.2	31	74	16	86	62	2	3	30	1.27
51017029--51017096	25	2.6	25	75	13	66	58	0	5	35	1.22
51017238--51017304	14	4.7	15	77	15	54	64	1	0	34	1.03
51017218--51017293	26	2.7	27	76	10	73	61	1	2	34	1.18
51021949--51021979	13	2.3	14	94	5	55	80	0	16	3	0.83
51025372--51025406	15	2.3	15	90	9	54	74	0	5	20	1.02
51027320--51027487	46	3.6	46	75	12	164	22	19	29	29	1.98
51027372--51027535	47	3.5	47	75	11	192	21	18	30	29	1.97
51027316--51027534	93	2.4	93	91	1	359	21	19	30	28	1.98
51029100--51029137	19	2.0	19	100	0	76	47	5	10	36	1.61
51030546--51030610	15	4.4	15	77	9	71	9	13	13	63	1.53
51030541--51030600	30	2.0	30	90	6	95	10	11	16	61	1.55
51033027--51033281	92	2.8	93	84	1	359	23	20	27	29	1.98
51034846--51034883	19	2.0	19	100	0	76	47	5	10	36	1.61
51036291--51036355	15	4.4	15	77	9	71	7	15	13	63	1.51
51036287--51036355	30	2.3	30	82	7	88	7	14	17	60	1.55
51038778--51038950	46	3.8	45	72	13	136	23	16	27	32	1.95
51051445--51052792	685	2.0	686	85	2	1832	31	16	23	28	1.96
51055010--51055094	28	3.0	28	100	0	170	32	31	3	31	1.75
51059866--51059966	28	3.5	28	86	6	114	29	26	13	29	1.94
51067796--51067896	28	3.5	28	86	6	114	29	26	13	29	1.94
51076967--51077080	27	4.2	27	73	6	95	14	15	36	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51079445--51079669	40	5.6	39	81	8	256	27	28	21	22	1.99
51079463--51079669	83	2.5	80	85	4	288	28	28	20	22	1.99
51081946--51081973	2	14.0	2	100	0	56	50	0	0	50	1.00
51082684--51082860	40	4.5	39	76	7	144	25	24	25	23	2.00
51082803--51082886	40	2.1	40	80	8	91	26	28	26	19	1.98
51089951--51089975	13	1.9	13	100	0	50	24	8	20	48	1.76
51091525--51091674	40	3.8	39	80	3	140	23	28	22	26	1.99
51092499--51092544	17	2.5	19	74	22	53	34	23	17	23	1.96
51099515--51099665	40	3.8	39	82	2	142	23	27	22	25	2.00
51099515--51099665	80	1.9	79	83	6	198	23	27	22	25	2.00
51100490--51100535	17	2.5	19	74	22	53	34	23	17	23	1.96
51113854--51113916	30	2.1	30	100	0	126	19	19	3	58	1.52
51122831--51122856	8	3.2	8	100	0	52	11	34	23	30	1.90
51125436--51125524	27	3.2	27	64	17	74	41	12	7	38	1.72
51127854--51127889	18	1.9	19	88	5	56	44	8	8	38	1.65
51132521--51132545	12	2.1	12	100	0	50	24	28	24	24	2.00
51133307--51133345	20	2.0	20	85	9	55	56	15	12	15	1.68
51136372--51136538	40	4.2	39	78	10	162	25	23	26	23	2.00
51148929--51149058	29	4.5	29	78	7	122	25	31	17	25	1.97
51152819--51152944	47	2.7	45	81	11	139	20	30	19	29	1.97
51156134--51156263	40	3.2	40	81	2	163	23	23	28	24	2.00
51164182--51164309	40	3.2	40	78	2	150	24	24	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51169590--51169667	39	2.0	39	94	0	138	28	25	17	28	1.98
51170814--51170939	47	2.7	46	81	7	146	22	29	20	27	1.98
51184193--51184324	29	4.6	29	88	0	165	29	15	31	24	1.95
51186414--51186586	46	3.7	46	72	13	156	23	19	27	29	1.98
51186407--51186578	93	1.8	93	90	2	274	23	20	27	28	1.99
51187516--51187549	17	2.0	17	100	0	68	41	11	23	23	1.87
51189501--51189550	15	3.4	15	86	2	66	10	18	12	60	1.59
51191939--51192114	46	3.8	46	78	4	192	22	20	28	28	1.98
51191935--51192106	93	1.8	93	91	0	281	22	20	29	27	1.98
51197862--51198115	53	4.8	53	80	8	245	36	17	25	21	1.94
51197872--51198068	108	1.8	109	87	5	301	35	16	25	22	1.95
51198312--51198342	16	1.9	16	93	0	53	41	0	22	35	1.54
51200997--51201042	23	2.0	24	86	4	67	52	28	2	17	1.56
51201592--51201740	43	3.5	42	75	12	119	31	26	16	24	1.97
51203317--51203456	75	1.9	75	85	5	194	24	22	18	35	1.96
51204827--51205046	40	5.6	40	84	4	268	25	26	23	24	2.00
51211880--51212022	39	3.7	39	90	2	234	22	30	20	26	1.99
51211840--51212021	77	2.3	79	89	2	269	23	29	22	24	1.99
51220814--51220852	18	2.1	19	85	4	53	51	7	0	41	1.31
51221210--51221352	39	3.7	39	89	1	216	23	30	20	25	1.99
51221201--51221351	77	1.9	79	90	2	243	24	29	21	24	1.99
51225711--51225930	40	5.6	40	83	4	259	25	26	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51231845--51231886	11	3.9	11	78	6	50	35	2	21	40	1.66
51233050--51233366	50	6.3	50	79	5	334	25	18	25	30	1.98
51233050--51233366	151	2.1	151	89	0	481	25	18	25	30	1.98
51233050--51233366	101	3.2	98	83	4	323	25	18	25	30	1.98
51248066--51248236	46	3.7	46	77	13	197	21	19	28	29	1.98
51248461--51248498	19	2.0	20	85	15	53	39	0	21	39	1.53
51252528--51252735	79	2.6	80	78	6	190	24	30	23	22	1.99
51252628--51252735	40	2.7	40	86	0	135	21	30	25	23	1.99
51256429--51256463	17	2.1	17	100	0	70	5	25	11	57	1.56
51260664--51260871	79	2.6	80	78	6	190	24	30	23	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444