genome.fa.s10.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  123  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31811414--31811477	31	2.1	31	90	0	101	25	23	15	35	1.94
31811670--31811883	24	9.0	24	90	3	317	26	21	22	28	1.99
31811941--31812017	9	7.9	9	70	16	55	33	20	9	36	1.85
31811937--31812019	20	4.2	20	95	0	148	31	19	12	37	1.88
31812056--31812103	25	1.9	25	82	0	60	25	14	25	35	1.94
31813257--31813321	27	2.4	27	79	5	69	20	21	21	36	1.95
31813279--31813330	27	1.9	27	84	7	70	19	21	23	36	1.95
31813372--31813588	27	8.0	27	76	7	145	32	9	17	40	1.83
31813381--31813602	53	4.1	54	77	9	159	31	8	19	40	1.82
31813579--31813791	27	7.9	27	84	7	236	38	7	23	29	1.82
31813581--31813784	54	3.8	54	84	3	268	39	7	22	29	1.82
31813797--31813886	27	3.3	27	85	3	119	32	10	17	40	1.83
31813780--31813886	54	2.0	54	81	7	128	30	10	20	38	1.86
31813797--31813901	27	3.9	27	79	9	90	34	9	17	39	1.82
31815097--31815171	39	1.9	39	94	0	132	37	10	13	38	1.79
31816444--31818074	652	2.5	652	92	2	2698	27	17	13	41	1.86
31828927--31828956	12	2.5	12	94	0	51	6	13	50	30	1.67
31830402--31830442	21	1.9	22	85	5	57	51	2	2	43	1.28
31830457--31830494	12	3.1	12	92	3	58	42	2	0	55	1.14
31831255--31831302	12	3.8	12	86	8	60	56	2	2	39	1.23
31835193--31835453	109	2.4	108	83	10	347	59	11	1	28	1.39
31835421--31835499	33	2.4	35	75	18	87	64	11	0	24	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31835547--31835592	22	2.1	22	88	8	67	2	34	0	63	1.07
31841964--31842058	30	3.2	29	67	20	70	48	10	1	40	1.45
31841965--31842077	60	1.9	59	81	1	136	47	12	1	38	1.52
31848449--31848479	12	2.6	12	100	0	62	35	19	9	35	1.85
31856754--31856912	43	3.7	43	80	9	182	22	20	27	30	1.98
31856748--31856925	85	2.1	86	84	9	231	22	19	25	32	1.97
31868883--31868951	28	2.5	28	95	2	122	21	10	24	43	1.83
31870697--31870721	12	2.1	12	100	0	50	52	8	0	40	1.31
31870735--31870778	19	2.4	18	85	7	54	40	9	0	50	1.34
31877710--31877760	25	2.0	25	96	0	93	35	9	31	23	1.87
31880305--31880337	5	6.6	5	92	0	57	57	3	0	39	1.14
31881085--31881150	34	1.9	35	84	9	91	25	25	19	28	1.99
31882677--31882943	44	6.0	44	82	7	299	31	28	16	23	1.97
31882677--31882935	89	2.9	89	90	3	373	30	28	16	23	1.97
31883436--31883609	38	4.6	38	94	0	303	32	26	21	20	1.97
31887369--31887425	2	28.5	2	96	0	105	0	0	47	52	1.00
31889119--31889162	23	1.9	23	86	9	63	40	0	9	50	1.34
31890313--31890370	20	3.1	19	90	5	82	55	6	0	37	1.27
31890313--31890372	19	3.1	19	88	7	86	55	6	0	38	1.27
31895814--31895871	22	2.6	22	80	0	62	32	25	15	25	1.95
31897152--31897339	18	10.1	18	66	13	76	37	13	12	36	1.83
31897513--31897661	45	3.3	45	90	2	221	40	20	19	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31897977--31898036	22	2.6	23	66	23	54	31	15	5	48	1.66
31898118--31898153	2	18.0	2	100	0	72	50	0	0	50	1.00
31899271--31899307	8	4.6	8	93	0	65	59	0	0	40	0.97
31899926--31899964	14	2.8	14	100	0	78	20	7	12	58	1.58
31906359--31906534	46	3.8	45	79	10	203	21	20	29	28	1.98
31906356--31906526	93	1.8	93	93	0	297	21	21	29	28	1.98
31910595--31910621	13	2.1	13	100	0	54	14	33	37	14	1.88
31916294--31916404	40	2.8	39	83	9	127	21	28	25	24	1.99
31916294--31916442	80	1.9	79	83	6	194	22	27	23	26	1.99
31922882--31923031	67	2.2	67	81	8	171	32	17	28	21	1.96
31922906--31923089	67	2.8	64	77	8	194	29	17	29	22	1.97
31925670--31925698	10	2.9	10	100	0	58	51	6	10	31	1.62
31933456--31933485	12	2.6	12	94	5	53	0	13	0	86	0.57
31935418--31935464	22	2.2	21	84	3	58	36	21	8	34	1.84
31935437--31935487	19	2.9	16	78	18	57	35	17	9	37	1.83
31935435--31935477	19	2.1	21	91	8	72	34	18	9	37	1.83
31936066--31936635	44	13.0	43	74	8	486	26	23	17	31	1.97
31936066--31936635	132	4.3	132	94	0	960	26	23	17	31	1.97
31940151--31940203	14	3.7	14	79	20	65	43	11	22	22	1.85
31943180--31943226	22	2.2	21	84	3	58	36	21	8	34	1.84
31943197--31943239	19	2.1	21	87	8	63	37	18	6	37	1.78
31944104--31944173	31	2.3	30	82	4	79	55	10	4	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31946053--31946119	32	2.1	32	97	0	125	14	23	14	46	1.83
31947617--31947756	37	3.8	36	75	17	110	53	4	2	39	1.35
31949362--31949391	15	2.0	15	93	0	51	73	10	6	10	1.25
31962332--31962461	40	3.2	40	81	2	163	24	28	23	23	2.00
31970328--31970457	40	3.2	40	81	2	163	24	28	23	23	2.00
31973267--31973433	40	4.2	40	80	2	167	23	27	23	25	2.00
31981204--31981332	40	3.2	40	80	3	154	24	27	24	23	2.00
31984785--31984809	10	2.5	10	100	0	50	92	0	8	0	0.40
31986136--31986264	40	3.2	40	81	6	145	23	22	28	25	1.99
31991835--31992013	40	4.5	40	75	8	134	22	27	22	26	1.99
31994668--31994705	18	2.1	18	85	9	51	55	0	0	44	0.99
31997298--31998682	694	2.0	694	94	0	2405	33	12	21	32	1.90
32007600--32007624	2	12.5	2	100	0	50	48	0	0	52	1.00
32007675--32007793	45	2.6	46	85	2	161	42	21	17	18	1.89
32022048--32022091	13	3.4	13	80	0	52	38	25	0	36	1.56
32022187--32022543	46	7.8	46	93	1	529	21	24	14	39	1.90
32022187--32022543	90	3.9	91	92	1	509	21	24	14	39	1.90
32022187--32022543	136	2.6	137	90	1	527	21	24	14	39	1.90
32025055--32025081	2	13.5	2	100	0	54	48	0	0	51	1.00
32026740--32026860	26	4.7	26	71	13	88	31	4	1	61	1.27
32026743--32026800	24	2.5	23	80	8	64	32	5	0	62	1.18
32026952--32027011	10	6.0	10	73	13	52	30	1	3	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32026972--32027037	10	6.7	10	73	20	59	31	4	0	63	1.14
32026966--32027092	7	17.4	7	65	24	50	29	7	0	62	1.29
32039091--32039522	220	2.0	218	91	0	702	31	16	22	28	1.96
32039500--32039622	44	2.9	44	89	4	182	29	13	27	30	1.94
32039496--32039679	84	2.1	85	84	7	230	31	13	28	26	1.94
32039499--32039637	44	3.3	41	84	7	147	32	13	27	26	1.94
32041234--32041335	47	2.2	46	80	16	113	34	4	0	59	1.25
32041473--32041540	10	6.7	10	70	20	52	33	4	0	61	1.16
32043029--32043204	46	3.8	46	78	12	207	20	20	30	28	1.98
32043026--32043197	93	1.8	93	94	0	308	20	20	30	27	1.98
32046881--32047193	46	6.8	46	91	0	437	22	23	13	41	1.89
32048794--32048843	2	25.0	2	100	0	100	50	0	0	50	1.00
32048988--32049027	21	1.9	21	89	0	62	55	2	0	42	1.13
32051707--32051793	43	2.0	43	93	0	147	34	13	2	49	1.55
32053528--32053682	42	3.7	42	74	5	116	27	27	16	29	1.97
32058910--32058952	21	2.0	21	100	0	86	18	18	13	48	1.80
32062975--32063023	16	3.3	16	72	21	61	55	0	2	42	1.11
32062966--32063023	28	2.1	28	100	0	116	53	0	3	43	1.17
32066045--32066162	41	3.1	41	60	28	98	32	17	28	21	1.96
32066013--32066176	71	2.3	71	100	0	328	35	17	28	18	1.94
32070993--32071033	18	2.3	18	84	12	50	39	0	17	43	1.49
32073717--32073756	13	3.1	13	77	0	53	32	5	27	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32075471--32075538	34	2.0	34	85	5	93	20	26	23	29	1.99
32093574--32093612	18	2.2	19	90	9	64	15	25	46	12	1.81
32095763--32095916	23	6.7	23	81	0	128	20	22	20	36	1.95
32095770--32095915	46	3.2	46	88	3	188	21	22	20	35	1.96
32095770--32095903	69	1.9	69	87	0	196	20	23	20	35	1.96
32097256--32097295	20	2.1	19	85	4	53	47	0	15	37	1.45
32098041--32098088	24	2.0	24	87	0	69	33	14	18	33	1.91
32099685--32099727	18	2.4	18	100	0	86	27	23	27	20	1.99
32099705--32099844	39	3.6	38	83	5	172	38	22	24	14	1.91
32105870--32105901	3	11.0	3	93	6	57	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444