Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  360  of  444  ( 53255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104667883--104668011
44
3.0
43
78
11
156
22
17
29
31
1.96
104681147--104681171
9
2.8
9
100
0
50
68
12
0
20
1.21
104689366--104689507
40
3.5
40
83
1
124
27
23
26
22
1.99
104689405--104689533
40
3.2
39
84
6
152
24
22
27
25
2.00
104697377--104697543
40
4.2
40
79
6
169
26
22
26
24
2.00
104701568--104701593
13
2.0
13
100
0
52
38
0
15
46
1.46
104705098--104705158
29
2.1
29
96
0
113
29
18
21
31
1.96
104710372--104710578
40
5.2
40
88
2
285
23
21
28
26
1.99
104710368--104710578
80
2.7
80
90
2
329
24
21
27
26
1.99
104717128--104717339
39
5.4
40
87
6
285
24
20
29
25
1.99
104723871--104724069
39
5.1
40
84
4
244
23
20
28
28
1.99
104723868--104724069
79
2.6
78
87
4
282
23
19
27
28
1.99
104729087--104729150
29
2.3
27
81
13
76
35
23
21
18
1.95
104729096--104729235
67
2.1
68
82
2
165
34
22
25
18
1.96
104729473--104729511
8
4.9
8
83
0
51
10
38
25
25
1.87
104729473--104729508
16
2.2
16
95
0
63
8
41
27
22
1.82
104731819--104731929
56
2.0
56
92
3
188
27
26
18
27
1.98
104739073--104739172
51
2.0
51
100
0
200
38
21
15
26
1.92
104742986--104743057
28
2.6
28
84
0
90
26
37
12
23
1.90
104743891--104743937
20
2.3
20
100
0
94
51
0
31
17
1.46
104758329--104758376
16
3.0
16
76
8
53
41
14
2
41
1.57
104770903--104770977
32
2.3
32
90
0
114
30
22
9
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104770903--104770995
32
2.9
32
85
0
96
29
23
10
36
1.89
104771065--104771186
28
4.4
28
76
5
122
22
28
18
29
1.98
104771038--104771186
56
2.7
56
83
5
187
24
28
18
29
1.98
104777186--104777260
32
2.3
32
93
0
123
32
22
10
34
1.89
104777186--104777274
32
2.8
32
87
1
108
31
23
10
34
1.88
104778776--104778928
39
3.9
39
92
0
252
23
32
20
23
1.98
104780675--104780772
28
3.5
28
79
10
110
24
30
17
27
1.97
104780646--104780772
56
2.3
56
90
0
191
23
28
18
29
1.97
104782417--104782519
28
3.7
28
85
5
145
27
33
14
25
1.94
104783025--104783064
21
1.9
21
84
0
53
37
22
10
30
1.87
104786037--104786117
34
2.4
34
83
4
92
24
25
23
25
2.00
104795795--104795936
37
3.8
37
95
0
248
23
33
18
23
1.96
104795984--104796463
48
10.0
48
92
0
771
30
26
6
35
1.83
104799307--104799336
16
1.9
16
93
6
53
50
20
0
30
1.49
104800415--104800496
25
3.3
25
72
16
80
30
20
23
25
1.99
104805932--104806019
41
2.1
41
89
0
131
48
1
15
34
1.53
104805935--104806013
28
3.0
26
73
14
79
49
1
12
36
1.49
104805935--104806004
13
5.2
13
78
13
79
52
1
11
34
1.46
104805936--104806055
13
9.0
13
72
18
77
45
0
15
38
1.51
104807476--104807527
27
2.0
26
88
3
77
71
1
23
3
1.13
104812121--104812159
1
39.0
1
84
0
51
0
7
0
92
0.39
104812114--104812159
21
2.1
21
88
4
65
0
10
0
89
0.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104812118--104812159
9
4.8
9
94
5
61
0
9
0
90
0.45
104812121--104812159
14
3.0
13
92
7
62
0
7
0
92
0.39
104825758--104825801
21
2.0
22
86
8
63
18
31
27
22
1.97
104829101--104829158
30
1.9
30
89
6
91
13
29
36
20
1.91
104831112--104831164
26
2.0
26
96
0
97
33
26
3
35
1.75
104833218--104833436
41
5.2
40
84
8
233
33
22
22
21
1.97
104833218--104833436
82
2.6
82
85
8
273
33
22
22
21
1.97
104834668--104834725
7
8.0
7
83
7
53
56
0
0
43
0.99
104834667--104834706
8
5.2
8
82
11
57
67
0
0
32
0.91
104834667--104834713
15
3.1
15
84
0
67
63
0
0
36
0.94
104837127--104837174
17
2.6
18
75
15
53
79
2
14
4
0.98
104838335--104838399
29
2.2
29
91
2
103
32
16
27
23
1.96
104845022--104845074
20
2.8
20
81
13
67
77
1
15
5
1.04
104846236--104846300
29
2.2
29
91
2
103
32
16
27
23
1.96
104850234--104850272
19
2.1
18
85
4
51
28
2
0
69
1.02
104850247--104850291
19
2.4
19
84
0
54
24
2
2
71
1.09
104850249--104850302
6
8.7
6
80
8
54
24
1
1
72
1.05
104851137--104851199
28
2.2
28
78
10
76
69
6
7
15
1.33
104851174--104851203
15
2.0
15
93
0
51
70
10
0
20
1.16
104851212--104851288
6
13.3
6
76
10
54
75
9
0
15
1.04
104851217--104851276
18
3.6
17
81
14
72
76
8
0
15
1.00
104851242--104851289
22
2.2
22
85
7
62
72
8
0
18
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104851455--104851692
97
2.5
97
83
8
306
40
7
2
49
1.44
104852589--104852637
13
3.5
13
79
15
53
14
10
2
73
1.18
104853372--104853404
16
2.1
16
88
5
50
66
3
24
6
1.28
104858373--104858425
22
2.5
22
87
9
74
1
35
0
62
1.06
104858525--104858691
85
2.0
83
83
6
212
40
17
5
36
1.74
104858732--104858787
19
3.0
18
82
7
67
55
0
3
41
1.17
104858732--104858799
20
3.4
21
76
13
56
54
0
2
42
1.15
104858967--104859020
10
5.4
10
78
6
56
72
1
3
22
1.10
104859571--104859617
17
2.7
18
75
18
53
55
2
0
42
1.12
104865789--104865822
13
2.6
13
100
0
68
50
5
0
44
1.26
104877578--104878201
210
3.0
209
90
1
962
31
9
16
42
1.81
104882712--104882788
2
38.5
2
100
0
154
49
0
50
0
1.00
104884970--104885041
36
2.0
36
97
0
135
26
11
18
44
1.83
104886254--104886284
6
5.2
6
92
0
53
19
3
0
77
0.90
104888722--104888755
11
3.2
11
91
4
52
50
8
0
41
1.34
104888972--104889012
14
3.1
14
79
10
50
58
0
0
41
0.98
104888971--104889112
58
2.4
58
83
4
171
53
3
0
42
1.18
104906135--104906160
7
3.7
7
100
0
52
46
30
11
11
1.76
104907065--104907655
294
2.0
293
99
0
1173
39
16
10
33
1.83
104909346--104909418
36
2.0
36
94
0
128
31
6
2
58
1.38
104911452--104911493
18
2.3
18
83
0
57
45
7
7
40
1.59
104917681--104917905
40
5.6
40
83
2
272
23
26
24
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104917654--104917905
80
3.2
80
81
3
285
24
26
23
25
2.00
104924203--104924331
48
2.7
48
78
8
129
26
17
31
24
1.97
104930206--104930714
47
10.7
47
91
2
768
33
8
29
29
1.86
104930206--104930714
96
5.3
96
92
1
810
33
8
29
29
1.86
104937160--104937476
48
6.6
48
75
5
291
29
20
27
23
1.99
104937148--104937476
144
2.3
144
83
2
408
28
20
27
23
1.99
104937858--104938033
59
3.0
59
91
5
293
26
22
27
23
1.99
104943526--104943666
55
2.6
55
79
6
151
25
26
29
19
1.98
104950827--104950875
17
2.8
18
74
22
50
24
18
22
34
1.96
104951698--104951864
40
4.2
40
79
6
169
25
21
27
25
1.99
104955807--104955838
14
2.4
13
90
10
55
62
12
6
18
1.50
104958399--104958436
2
19.0
2
100
0
76
50
0
0
50
1.00
104959471--104959634
43
3.9
43
83
1
206
26
18
29
25
1.98
104960191--104960224
16
2.0
18
88
11
54
17
11
17
52
1.73
104964874--104965046
27
6.4
27
85
0
202
38
19
18
24
1.93
104968309--104968457
80
1.9
80
82
2
192
23
30
24
22
1.99
104968350--104968457
40
2.7
39
86
2
135
22
29
25
23
1.99
104976431--104976579
80
1.9
80
81
2
183
22
30
24
22
1.99
104976472--104976579
40
2.7
38
85
8
128
21
29
25
23
1.99
104983034--104983134
21
4.9
21
78
4
107
42
14
24
17
1.88
104983043--104983136
42
2.2
43
88
1
145
42
14
24
18
1.88
104984702--104984727
13
2.0
13
100
0
52
30
15
15
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104986475--104986508
17
1.9
18
88
5
52
26
38
8
26
1.85
104989835--104989873
19
2.1
19
100
0
78
30
20
5
43
1.73
104990629--104990760
47
2.8
47
79
8
151
35
25
12
26
1.92
104995241--104995462
122
1.8
121
85
3
313
40
9
18
31
1.82
104998934--104998977
3
14.3
3
95
4
79
65
0
0
34
0.93
105007703--105007780
28
2.8
28
84
0
102
26
25
8
38
1.86
105007812--105007895
40
2.1
40
90
0
132
33
25
16
25
1.96
105011336--105011553
79
2.7
79
80
8
221
26
25
21
26
2.00
105011350--105011553
40
5.1
39
81
7
207
25
25
22
25
2.00
105020641--105020694
16
3.2
16
81
5
63
1
25
5
66
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444