genome.fa.s10.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  178  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49640848--49640887	21	1.9	21	94	0	71	40	17	22	20	1.92
49640849--49640914	10	6.5	10	71	3	51	40	19	22	16	1.91
49640849--49640917	20	3.4	20	85	2	75	42	20	21	15	1.89
49640880--49640924	20	2.2	20	96	0	81	40	20	24	15	1.91
49642985--49643045	30	2.1	29	81	9	70	14	24	1	59	1.45
49643036--49643075	19	2.0	20	95	4	73	0	22	5	72	1.04
49644114--49644149	16	2.2	16	90	5	54	30	8	8	52	1.61
49652897--49652960	13	4.9	13	86	0	83	29	7	26	35	1.85
49659607--49659657	25	2.0	25	92	0	84	39	5	17	37	1.74
49659610--49659657	12	3.9	12	75	5	51	39	4	18	37	1.70
49664275--49664325	25	2.0	25	92	0	84	39	5	17	37	1.74
49664278--49664325	12	3.9	12	75	5	51	39	4	18	37	1.70
49666659--49666928	140	1.9	138	80	7	305	34	2	4	58	1.31
49671937--49671963	2	13.5	2	100	0	54	51	0	0	48	1.00
49673998--49674023	12	2.2	12	100	0	52	30	19	0	50	1.48
49677232--49677271	21	2.0	21	95	5	73	20	25	40	15	1.90
49679216--49679240	13	1.9	13	100	0	50	64	16	4	16	1.44
49680345--49680397	21	2.5	21	84	0	70	24	5	37	32	1.79
49686471--49686689	46	4.7	47	78	11	195	23	27	18	29	1.98
49686475--49686733	46	5.6	45	75	11	186	23	27	18	30	1.98
49686562--49686733	94	1.8	92	84	7	231	22	28	19	29	1.98
49689872--49689937	34	2.0	34	82	8	82	25	24	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49692931--49693028	42	2.3	42	91	0	160	17	14	33	34	1.90
49695538--49695602	33	2.0	33	90	3	105	26	3	27	43	1.70
49696060--49696097	15	2.4	17	82	13	53	42	5	13	39	1.66
49696225--49696330	43	2.5	41	80	6	104	22	20	27	29	1.99
49702213--49702400	40	4.7	40	91	1	279	26	29	21	23	1.99
49702193--49702404	80	2.7	79	88	3	318	27	28	20	23	1.99
49707737--49707806	27	2.6	27	95	2	122	30	27	14	28	1.95
49712219--49712369	40	3.8	39	82	2	142	23	27	22	25	2.00
49712219--49712369	80	1.9	79	83	6	198	23	27	22	25	2.00
49718770--49718839	27	2.6	27	95	2	122	30	27	14	28	1.95
49723170--49723362	40	4.8	40	89	1	271	26	28	20	23	1.99
49723150--49723362	80	2.7	79	87	6	313	28	28	20	23	1.99
49731297--49731388	41	2.2	42	81	12	109	21	21	28	28	1.99
49733132--49733162	2	15.5	2	100	0	62	51	0	0	48	1.00
49734706--49734925	110	2.0	110	97	0	413	46	8	20	24	1.79
49735290--49735333	22	2.0	22	95	0	79	9	15	36	38	1.80
49735312--49735418	39	2.7	39	86	1	151	20	21	28	29	1.98
49736801--49737008	40	5.2	40	82	1	184	21	26	24	27	1.99
49736827--49737008	80	2.3	80	83	0	220	21	26	23	28	1.99
49744846--49745053	40	5.2	40	82	1	184	21	26	24	27	1.99
49744872--49745053	80	2.3	80	83	0	220	21	26	23	28	1.99
49750619--49750681	31	2.1	31	87	3	92	26	22	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49750889--49750992	23	4.4	24	91	3	149	28	21	21	28	1.98
49751042--49751108	20	3.3	20	91	0	107	32	22	11	32	1.90
49758211--49758313	29	3.6	29	76	6	102	22	15	32	30	1.95
49762669--49762732	31	2.1	31	90	0	101	25	23	15	35	1.94
49762946--49763064	23	5.1	23	94	1	193	30	21	21	26	1.99
49763120--49763181	20	3.1	20	90	0	106	32	22	12	32	1.92
49767558--49767777	110	2.0	110	99	0	431	46	8	21	23	1.79
49768114--49768263	39	3.8	39	92	1	248	20	22	28	29	1.98
49773841--49773991	40	3.8	39	82	2	142	23	27	22	25	2.00
49773841--49773991	80	1.9	79	83	6	198	23	27	22	25	2.00
49781845--49781995	40	3.8	39	82	2	142	23	27	22	25	2.00
49781845--49781995	80	1.9	79	83	6	198	23	27	22	25	2.00
49785815--49786067	47	5.4	47	90	0	380	28	30	8	32	1.86
49785959--49786037	25	3.3	25	68	10	83	31	27	5	35	1.79
49794469--49794682	40	5.4	40	90	3	285	24	21	27	26	2.00
49794469--49794682	118	1.8	118	84	8	292	24	21	27	26	2.00
49802295--49802465	92	1.8	93	92	3	292	29	29	20	21	1.98
49802288--49802462	46	3.8	46	77	15	191	30	29	20	20	1.97
49802339--49802481	46	3.1	44	75	16	132	29	27	20	22	1.98
49805206--49805421	40	5.4	40	92	2	296	24	21	27	26	1.99
49816055--49816159	42	2.5	41	78	6	113	30	25	17	26	1.97
49816167--49816259	48	1.9	48	86	4	134	25	25	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49818061--49818505	50	8.8	50	74	4	356	26	16	25	31	1.97
49818061--49818502	151	2.9	151	86	0	578	26	16	25	31	1.97
49818263--49818444	101	1.8	101	85	0	256	28	17	24	30	1.97
49819061--49819426	180	2.0	180	85	4	488	39	8	17	34	1.80
49822182--49822256	28	2.7	28	85	0	105	30	33	9	26	1.88
49822267--49822342	40	1.9	40	88	0	116	35	30	14	19	1.92
49827402--49827919	48	10.8	48	94	0	901	33	5	26	33	1.81
49827964--49828072	37	2.9	37	95	0	191	22	19	30	27	1.98
49829319--49829359	21	2.0	21	85	4	57	48	19	0	31	1.49
49830480--49830522	21	2.0	22	86	4	61	60	0	4	34	1.17
49833205--49833336	29	4.6	29	85	0	147	29	15	31	24	1.95
49840591--49840776	67	2.8	66	80	8	171	30	15	30	23	1.95
49840615--49840798	67	2.8	64	79	8	203	28	15	30	24	1.96
49844263--49844305	21	2.0	22	86	4	61	60	0	4	34	1.17
49846137--49846359	40	5.5	40	85	1	248	34	24	16	24	1.95
49848422--49848459	15	2.6	14	88	8	58	7	10	13	68	1.39
49850501--49850573	27	2.7	26	79	8	74	38	20	17	23	1.93
49851268--49851327	27	2.3	27	85	2	77	21	23	20	35	1.96
49857943--49858024	26	3.1	27	82	10	98	31	17	24	26	1.97
49858682--49858733	27	2.0	26	84	3	68	17	26	21	34	1.95
49858684--49859042	98	3.7	98	96	1	632	21	25	20	33	1.97
49860780--49860962	39	4.6	39	87	0	240	24	22	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49865566--49865733	40	4.2	40	79	3	160	23	26	23	27	2.00
49865582--49865731	80	1.9	80	83	8	198	22	26	24	27	1.99
49873574--49873741	40	4.2	40	79	3	160	23	26	23	27	2.00
49873590--49873739	80	1.9	80	83	8	198	22	26	24	27	1.99
49877162--49877190	15	1.9	15	100	0	58	37	27	6	27	1.82
49878786--49878812	2	13.5	2	100	0	54	51	0	0	48	1.00
49889322--49889499	52	3.5	51	85	6	238	26	29	15	28	1.96
49889322--49889499	51	3.5	51	87	6	247	26	29	15	28	1.96
49896567--49896734	40	4.2	40	79	3	160	23	26	23	27	2.00
49896583--49896732	80	1.9	80	83	8	198	22	26	24	27	1.99
49904570--49904737	40	4.2	40	79	3	160	23	26	23	27	2.00
49904586--49904735	80	1.9	80	83	8	198	22	26	24	27	1.99
49906584--49906671	19	4.8	18	68	17	65	45	14	9	30	1.76
49906563--49906697	54	2.5	54	88	0	162	43	15	8	32	1.76
49907866--49907953	43	2.0	43	100	0	176	34	15	14	35	1.89
49913666--49913799	42	3.2	42	95	0	241	25	19	22	32	1.97
49918026--49918177	40	3.8	39	79	5	144	26	21	28	23	1.99
49918079--49918217	40	3.5	40	83	2	147	25	24	27	22	2.00
49918026--49918177	79	1.9	80	84	6	202	26	21	28	23	1.99
49926223--49926366	39	3.7	40	84	0	175	23	22	29	23	1.99
49934052--49934233	39	4.6	39	86	1	238	24	21	30	23	1.99
49935687--49936018	40	8.1	40	87	4	475	23	19	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49935684--49936018	82	4.1	81	87	4	476	23	19	23	33	1.97
49935685--49936018	122	2.7	122	92	1	535	23	19	23	33	1.97
49937589--49937640	27	1.9	27	92	0	86	21	25	17	36	1.94
49937589--49937682	27	3.6	26	80	5	82	20	24	21	34	1.97
49937636--49937689	25	2.1	26	89	3	83	24	22	22	31	1.98
49937651--49937865	107	2.0	107	91	1	351	12	16	35	35	1.87
49944181--49944233	27	2.0	27	92	0	88	22	24	18	33	1.97
49944184--49944243	27	2.2	27	84	0	75	21	25	20	33	1.97
49945017--49945045	14	2.1	14	100	0	58	41	13	6	37	1.72
49947584--49947609	13	2.0	13	100	0	52	30	7	7	53	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444