genome.fa.s10.2.7.7.80.10.50.1000.414.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 129486693 
Parameters: 2 7 7 80 10 50 1000
Length:  129486693

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444   

This is table  414  of  444  ( 53255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120151285--120151322	2	19.0	2	100	0	76	50	0	0	50	1.00
120153513--120153547	18	1.9	18	88	0	52	31	8	14	45	1.75
120154530--120154633	47	2.3	46	79	11	106	56	5	10	26	1.55
120154612--120154664	26	2.1	26	85	3	72	56	0	11	32	1.35
120154685--120154744	26	2.3	26	76	0	66	61	6	3	28	1.37
120158802--120158848	22	2.0	23	92	8	78	31	8	4	55	1.49
120164024--120164311	131	2.2	131	86	2	391	35	20	18	26	1.95
120164101--120164487	132	2.9	132	83	3	458	35	17	18	28	1.94
120167644--120168995	44	30.4	43	81	5	1245	24	30	15	29	1.96
120167640--120168995	88	15.2	88	82	4	1475	24	30	15	29	1.96
120167640--120168995	132	10.2	132	85	4	1632	24	30	15	29	1.96
120168273--120168305	14	2.4	14	100	0	66	15	21	15	48	1.81
120172435--120172687	126	2.0	127	97	0	481	26	24	16	32	1.97
120174047--120174545	131	3.8	130	79	6	449	35	18	18	28	1.94
120175611--120175675	32	2.0	32	96	0	121	32	6	23	38	1.79
120180191--120180238	21	2.3	21	89	7	71	8	22	50	18	1.74
120180720--120180763	13	3.3	13	87	6	52	68	0	0	31	0.90
120180883--120180914	16	2.0	16	93	0	55	34	31	9	25	1.87
120185400--120185455	5	11.2	5	100	0	112	39	0	0	60	0.97
120186277--120186306	15	2.0	15	93	0	51	63	0	0	36	0.95
120186452--120186602	80	1.9	79	85	9	209	43	7	17	32	1.76
120186589--120186630	2	21.5	2	95	4	77	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120186797--120186838	16	2.9	14	83	13	50	54	0	2	42	1.13
120187802--120187844	21	2.0	21	91	8	70	18	13	18	48	1.80
120191307--120191810	251	2.0	251	100	0	1008	37	15	11	35	1.83
120204524--120204619	48	2.0	48	100	0	192	37	12	20	29	1.90
120214742--120214831	47	1.9	47	90	0	144	36	4	13	45	1.63
120217072--120217125	18	3.0	18	97	0	99	50	9	12	27	1.71
120218429--120218497	36	1.9	36	96	0	129	46	18	10	24	1.80
120220554--120220595	20	2.1	20	100	0	84	35	21	4	38	1.75
120226475--120226569	19	5.0	19	89	7	149	37	11	15	34	1.84
120226477--120226569	36	2.5	37	87	8	143	37	11	16	34	1.85
120233464--120233674	64	3.2	64	62	20	142	29	26	18	26	1.98
120233442--120233716	137	2.0	137	98	0	532	30	24	19	25	1.98
120235502--120235689	26	7.2	26	96	0	322	38	23	4	33	1.75
120239097--120239192	43	2.2	44	80	12	108	28	25	16	30	1.97
120255447--120255482	13	2.8	13	91	0	63	36	8	33	22	1.84
120255476--120255500	13	1.9	13	100	0	50	24	8	28	40	1.83
120255438--120255503	26	2.5	26	80	0	78	33	7	27	31	1.85
120265644--120265693	22	2.3	23	80	16	61	20	0	36	44	1.52
120265663--120265697	16	2.2	16	90	10	54	20	0	25	54	1.45
120265663--120265711	16	3.0	16	81	3	53	16	0	30	53	1.43
120266430--120266796	126	2.9	126	90	1	574	34	17	19	28	1.95
120267733--120267797	32	2.0	32	96	0	121	30	4	24	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120269171--120269223	26	2.0	26	82	7	63	39	20	13	26	1.89
120278258--120278322	32	2.0	32	100	0	130	30	6	24	38	1.80
120279800--120279849	26	1.9	26	84	8	66	38	22	16	24	1.93
120280037--120280084	21	2.3	21	85	7	62	12	2	52	33	1.51
120283737--120283778	18	2.3	18	87	0	57	45	7	26	21	1.77
120284374--120284398	7	3.6	7	100	0	50	60	12	0	28	1.32
120285380--120285512	48	2.8	45	81	10	135	51	6	9	32	1.61
120286772--120286808	15	2.4	17	82	17	53	35	8	0	56	1.29
120291945--120291991	23	2.0	23	100	0	94	29	8	17	44	1.78
120293097--120293255	76	2.1	76	85	0	219	45	7	17	28	1.76
120296813--120296947	26	5.2	26	92	1	218	34	5	24	36	1.78
120296813--120296947	51	2.6	52	94	1	236	34	5	24	36	1.78
120305297--120305377	21	4.0	20	82	4	90	20	14	9	54	1.69
120306083--120306139	18	3.2	18	89	0	87	28	21	17	33	1.96
120314336--120314437	43	2.4	43	88	0	159	28	28	19	23	1.98
120314569--120314629	31	2.0	30	90	9	97	70	4	3	21	1.21
120314579--120314625	19	2.5	19	76	10	51	72	4	2	21	1.12
120318753--120318792	19	2.1	19	100	0	80	22	22	5	50	1.68
120319036--120319164	7	18.1	7	70	12	75	37	41	0	20	1.53
120319191--120319280	46	2.0	46	93	0	153	42	25	2	30	1.67
120319246--120319299	7	7.7	7	78	0	54	50	25	0	24	1.50
120319207--120319291	21	3.9	21	72	14	73	44	25	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120319726--120319888	43	3.8	43	95	0	272	22	17	34	24	1.96
120319961--120320043	31	2.6	31	80	3	85	61	19	3	15	1.48
120325937--120326162	9	24.6	9	74	9	134	38	1	12	47	1.50
120325937--120326162	18	12.3	18	75	9	152	38	1	12	47	1.50
120325990--120326162	27	6.2	27	76	10	150	38	1	13	46	1.53
120325913--120326134	114	1.9	114	84	3	295	38	1	12	46	1.52
120326267--120326322	15	3.8	15	78	21	73	53	0	0	46	1.00
120326499--120326566	24	2.8	24	86	8	102	44	5	20	29	1.75
120326657--120327565	373	2.4	372	97	0	1721	38	10	15	35	1.81
120328407--120328447	19	2.0	22	86	13	61	36	43	2	17	1.62
120328509--120328648	27	5.2	28	90	5	184	35	22	24	17	1.96
120329010--120329145	26	5.2	26	96	0	227	36	24	5	33	1.79
120333673--120333704	15	2.1	15	94	0	55	31	9	0	59	1.29
120334124--120334174	18	2.8	18	85	8	68	49	1	3	45	1.32
120334480--120334669	41	4.6	41	91	0	290	25	30	22	22	1.99
120334655--120334774	41	2.9	41	85	2	152	19	22	25	33	1.97
120334832--120334938	40	2.7	40	86	1	142	17	17	21	42	1.89
120334832--120334939	41	2.6	41	88	2	146	18	17	21	42	1.89
120338778--120338863	38	2.2	39	87	2	120	29	29	20	20	1.98
120347550--120347580	16	1.9	16	93	0	53	32	6	6	54	1.51
120349100--120349239	27	5.2	28	88	5	166	35	22	23	17	1.95
120349100--120349239	54	2.6	54	88	2	183	35	22	23	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120350856--120350965	26	4.2	26	97	0	184	36	24	5	33	1.79
120362171--120362277	54	2.0	55	90	5	173	47	16	19	15	1.82
120363424--120364037	176	3.5	175	86	2	822	31	17	23	27	1.97
120363696--120363789	43	2.1	45	82	3	111	31	14	25	27	1.95
120365915--120365945	16	1.9	16	93	0	53	32	6	6	54	1.51
120368744--120368780	18	2.1	18	100	0	74	37	10	16	35	1.83
120369395--120369432	13	2.9	13	84	0	58	34	26	7	31	1.85
120372929--120372964	9	3.9	9	89	7	54	13	2	0	83	0.76
120377304--120377337	12	2.8	12	86	0	50	50	17	23	8	1.74
120385279--120385398	42	2.8	43	81	5	136	32	20	18	29	1.96
120385461--120385581	45	2.7	44	79	7	127	27	19	23	29	1.98
120388779--120388857	26	3.0	26	67	10	61	27	10	2	59	1.43
120397872--120397929	20	2.9	19	79	5	62	27	10	0	62	1.28
120397889--120397948	10	6.0	10	77	11	52	30	6	1	61	1.31
120397997--120398043	21	2.2	21	85	11	60	34	2	6	57	1.36
120398069--120398125	24	2.4	24	81	0	69	40	12	3	43	1.59
120398310--120398348	2	19.5	2	100	0	78	48	0	0	51	1.00
120400876--120400921	19	2.4	19	85	7	58	19	17	13	50	1.78
120403589--120403638	17	2.9	16	82	11	55	82	6	12	0	0.85
120403612--120403636	12	2.1	12	100	0	50	92	0	8	0	0.40
120405349--120405475	64	2.0	64	93	0	218	30	16	14	38	1.88
120405592--120406272	44	15.6	44	64	13	194	34	20	24	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120405547--120406290	87	8.5	87	86	3	935	34	20	23	21	1.96
120407557--120407614	20	2.9	19	79	5	62	27	10	0	62	1.28
120407574--120407633	10	6.0	10	77	11	52	30	6	1	61	1.31
120407681--120407727	21	2.2	21	85	11	60	34	2	6	57	1.36
120407753--120407809	24	2.4	24	81	0	69	40	12	3	43	1.59
120407995--120408019	2	12.5	2	100	0	50	48	0	0	52	1.00
120412399--120412505	26	4.2	26	91	2	180	32	6	24	36	1.81
120412399--120412505	51	2.1	52	94	1	189	32	6	24	36	1.81
120419445--120419552	26	4.2	26	93	0	189	32	7	24	36	1.83
120427248--120427277	15	2.0	15	93	0	51	23	0	0	76	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   428   429   430   431   432   
          433   434   435   436   437   438   439   440   441   442   443   444